Wall clock time and date at job start Mon Mar 30 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.08022 * 2 1 4 4 C 1.53187 * 110.27111 * 238.58335 * 2 1 3 5 5 N 1.46448 * 113.71152 * 213.49507 * 4 2 1 6 6 C 1.46501 * 126.07870 * 181.59231 * 5 4 2 7 7 C 1.53000 * 109.47034 * 274.70989 * 6 5 4 8 8 O 1.42898 * 109.47053 * 65.00127 * 7 6 5 9 9 C 1.42902 * 113.99850 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46730 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00803 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99889 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 S 1.67286 * 107.83435 * 1.32422 * 5 4 2 19 19 O 1.42104 * 105.40328 * 135.00677 * 18 5 4 20 20 O 1.42097 * 105.40752 * 265.10695 * 18 5 4 21 21 C 1.55567 * 110.09681 * 121.56006 * 2 1 3 22 22 H 1.08996 * 109.47762 * 299.89374 * 1 2 3 23 23 H 1.08998 * 109.47173 * 59.89683 * 1 2 3 24 24 H 1.09008 * 109.46853 * 179.89259 * 1 2 3 25 25 H 1.08999 * 108.76659 * 92.28857 * 4 2 1 26 26 H 1.08999 * 108.51185 * 334.51598 * 4 2 1 27 27 H 1.09006 * 109.47002 * 154.71494 * 6 5 4 28 28 H 1.08992 * 109.47662 * 34.71278 * 6 5 4 29 29 H 1.09000 * 109.47216 * 305.00225 * 7 6 5 30 30 H 1.09006 * 109.47062 * 185.00415 * 7 6 5 31 31 H 1.09004 * 109.46962 * 60.00545 * 9 8 7 32 32 H 1.08997 * 109.47823 * 300.00163 * 9 8 7 33 33 H 0.96998 * 120.00124 * 180.02562 * 13 12 10 34 34 H 1.08993 * 111.37115 * 38.64696 * 21 2 1 35 35 H 1.09005 * 111.36828 * 273.84460 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9042 1.0237 0.0000 4 6 2.0607 -0.7490 -1.2263 5 7 3.3137 -1.4666 -0.9814 6 6 4.0719 -2.2400 -1.9679 7 6 3.5113 -3.6616 -2.0416 8 8 2.1731 -3.6207 -2.5410 9 6 1.5539 -4.9039 -2.6500 10 6 0.1540 -4.7424 -3.1842 11 1 -0.2248 -3.7583 -3.4176 12 6 -0.6432 -5.8510 -3.3751 13 7 -1.8647 -5.7101 -3.8418 14 14 0.0116 -7.5531 -2.9709 15 1 -0.3001 -7.8804 -1.5563 16 1 1.4827 -7.5783 -3.1722 17 1 -0.6272 -8.5540 -3.8628 18 16 3.7287 -1.2398 0.6231 19 8 4.1146 -2.5223 1.0981 20 8 4.6244 -0.1367 0.6291 21 6 2.0645 -0.7646 1.2449 22 1 -0.3634 0.5121 0.8909 23 1 -0.3633 0.5154 -0.8890 24 1 -0.3633 -1.0278 -0.0019 25 1 2.2208 -0.0330 -2.0324 26 1 1.3054 -1.4663 -1.5474 27 1 5.1204 -2.2777 -1.6720 28 1 3.9872 -1.7649 -2.9452 29 1 3.5142 -4.1054 -1.0460 30 1 4.1300 -4.2620 -2.7087 31 1 1.5161 -5.3738 -1.6672 32 1 2.1318 -5.5298 -3.3300 33 1 -2.4257 -6.4900 -3.9757 34 1 1.4565 -1.6426 1.4630 35 1 2.1370 -0.1091 2.1127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395460189.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:47 Heat of formation + Delta-G solvation = -112.065869 kcal Electronic energy + Delta-G solvation = -18782.838243 eV Core-core repulsion = 15715.508836 eV Total energy + Delta-G solvation = -3067.329407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.02938 -37.15198 -36.65745 -35.84507 -34.08973 -32.59484 -29.59290 -27.95083 -27.55007 -25.19675 -22.22467 -21.84978 -20.96508 -18.88009 -17.27591 -16.80369 -16.70109 -16.02821 -15.59935 -15.15992 -15.08476 -14.53794 -14.20181 -13.71601 -13.22257 -13.09932 -12.86165 -12.69597 -12.46148 -12.20899 -12.08351 -11.96606 -11.78696 -11.46340 -11.23671 -10.97323 -10.94121 -10.78851 -10.67252 -10.42043 -9.88518 -9.21877 -8.89547 -8.70950 -8.47348 -6.15476 -4.14409 0.23107 2.50329 3.23188 3.30441 3.32675 3.57225 3.78941 4.15896 4.33132 4.48023 4.59778 4.77851 4.93170 5.15981 5.16723 5.29180 5.41391 5.48960 5.62059 5.68043 5.75667 5.84031 5.91225 6.06766 6.16002 6.21608 6.32943 6.61900 6.74171 6.99262 7.57047 7.98717 8.63066 8.94413 9.44478 10.97270 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.005819 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.226017 B = 4810.311336 C = 5314.652580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.097 0.903 4 C 0.079 3.921 5 N -0.976 5.976 6 C 0.167 3.833 7 C 0.031 3.969 8 O -0.376 6.376 9 C 0.167 3.833 10 C -0.518 4.518 11 H 0.082 0.918 12 C 0.073 3.927 13 N -0.895 5.895 14 Si 0.874 3.126 15 H -0.274 1.274 16 H -0.266 1.266 17 H -0.282 1.282 18 S 2.561 3.439 19 O -0.960 6.960 20 O -0.961 6.961 21 C -0.587 4.587 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.048 0.952 31 H -0.002 1.002 32 H 0.002 0.998 33 H 0.266 0.734 34 H 0.145 0.855 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.308 10.971 8.645 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.115 0.885 4 C -0.047 4.047 5 N -0.818 5.818 6 C 0.043 3.957 7 C -0.048 4.048 8 O -0.295 6.295 9 C 0.092 3.908 10 C -0.555 4.555 11 H 0.100 0.900 12 C -0.129 4.129 13 N -0.534 5.534 14 Si 0.701 3.299 15 H -0.199 1.199 16 H -0.191 1.191 17 H -0.208 1.208 18 S 2.658 3.342 19 O -0.950 6.950 20 O -0.950 6.950 21 C -0.718 4.718 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.016 0.984 32 H 0.020 0.980 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.043 10.867 8.904 16.708 hybrid contribution -0.379 -1.187 0.124 1.252 sum 8.664 9.680 9.028 15.820 Atomic orbital electron populations 1.21729 0.91469 1.03792 1.02493 1.21951 0.99770 0.99372 0.90093 0.88460 1.21755 0.87870 0.97369 0.97711 1.56739 1.33307 1.64422 1.27295 1.21035 0.92521 0.89911 0.92234 1.22970 0.86841 0.96393 0.98624 1.87869 1.24654 1.31593 1.85398 1.20607 0.93996 0.81523 0.94685 1.20863 0.95167 0.96182 1.43337 0.90006 1.24759 0.94659 0.98825 0.94680 1.69870 1.07771 1.30471 1.45281 0.86871 0.79736 0.84439 0.78837 1.19941 1.19077 1.20797 1.06658 0.77198 0.75036 0.75301 1.93593 1.81779 1.39668 1.79944 1.93622 1.60409 1.55291 1.85686 1.30868 1.22816 1.11356 1.06716 0.91851 0.91348 0.90958 0.90637 0.88396 0.89798 0.89511 0.93105 0.93346 0.98408 0.98007 0.92372 0.83697 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.06 37.16 0.34 -0.96 16 2 C -0.09 -0.91 3.28 -89.16 -0.29 -1.20 16 3 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.08 1.00 6.29 -3.97 -0.02 0.98 16 5 N -0.98 -13.68 3.29 -114.31 -0.38 -14.06 16 6 C 0.17 2.36 6.63 -4.04 -0.03 2.33 16 7 C 0.03 0.54 6.28 37.16 0.23 0.77 16 8 O -0.38 -8.28 9.34 -35.23 -0.33 -8.61 16 9 C 0.17 4.17 4.76 36.00 0.17 4.34 16 10 C -0.52 -14.92 9.99 -34.44 -0.34 -15.26 16 11 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 12 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 14 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 S 2.56 33.97 6.19 -107.50 -0.66 33.31 16 19 O -0.96 -15.94 18.04 -57.40 -1.04 -16.98 16 20 O -0.96 -14.70 18.14 -57.40 -1.04 -15.74 16 21 C -0.59 -5.65 7.05 38.52 0.27 -5.38 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.80 8.10 -51.92 -0.42 0.38 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.10 1.50 6.95 -51.93 -0.36 1.14 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.00 -0.04 7.57 -51.93 -0.39 -0.44 16 32 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 34 H 0.14 1.37 8.08 -51.93 -0.42 0.95 16 35 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -35.35 303.52 -7.90 -43.25 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -5.36 Total: -3.70 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 0.23 Total: -12.38 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.40 Total: -40.34 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -2.41 Total: -41.33 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 33.97 SS G_CDS: -0.66 Total: 33.31 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.35 -7.90 -43.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395460189.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.815 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds