Wall clock time and date at job start Mon Mar 30 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47434 * 2 1 4 4 N 1.46505 * 109.47404 * 240.00091 * 2 1 3 5 5 S 1.65601 * 119.99942 * 94.99707 * 4 2 1 6 6 O 1.42100 * 104.27822 * 308.93012 * 5 4 2 7 7 O 1.42103 * 104.27772 * 181.07676 * 5 4 2 8 8 C 1.81399 * 104.44938 * 65.00328 * 5 4 2 9 9 C 1.50699 * 109.47054 * 179.97438 * 8 5 4 10 10 H 1.08003 * 119.99963 * 359.97438 * 9 8 5 11 11 C 1.37874 * 120.00270 * 179.97438 * 9 8 5 12 12 N 1.31522 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47141 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47162 * 120.00342 * 13 11 9 16 16 H 1.48501 * 109.47494 * 240.00320 * 13 11 9 17 17 C 1.53002 * 109.47247 * 120.00288 * 2 1 3 18 18 H 1.08998 * 109.82200 * 300.56519 * 17 2 1 19 19 C 1.54387 * 109.82992 * 179.58930 * 17 2 1 20 20 C 1.55302 * 102.25160 * 219.12840 * 19 17 2 21 21 C 1.54949 * 100.94244 * 34.13238 * 20 19 17 22 22 O 1.43229 * 109.83295 * 61.45261 * 17 2 1 23 23 H 1.08999 * 109.46981 * 300.00170 * 1 2 3 24 24 H 1.09001 * 109.47320 * 60.00140 * 1 2 3 25 25 H 1.09001 * 109.46709 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99809 * 275.00458 * 4 2 1 27 27 H 1.09000 * 109.47070 * 299.99993 * 8 5 4 28 28 H 1.09001 * 109.46593 * 59.99990 * 8 5 4 29 29 H 0.96992 * 120.00038 * 180.02562 * 12 11 9 30 30 H 1.09006 * 110.84451 * 337.31432 * 19 17 2 31 31 H 1.08996 * 110.85034 * 100.93748 * 19 17 2 32 32 H 1.09004 * 111.12497 * 276.21788 * 20 19 17 33 33 H 1.08994 * 111.16360 * 152.06891 * 20 19 17 34 34 H 1.09003 * 110.30998 * 204.64287 * 21 20 19 35 35 H 1.08997 * 110.39417 * 82.51639 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4122 0.1772 -2.5505 6 8 1.2751 0.9966 -2.7846 7 8 2.8122 -0.8075 -3.4937 8 6 3.8313 1.1873 -2.0441 9 6 4.2871 2.0316 -3.2061 10 1 3.7747 1.9667 -4.1546 11 6 5.3584 2.8869 -3.0586 12 7 5.9828 2.9656 -1.9037 13 14 5.9240 3.9329 -4.4991 14 1 5.0620 3.6603 -5.6773 15 1 5.8258 5.3695 -4.1364 16 1 7.3333 3.6008 -4.8289 17 6 2.0400 -0.7213 1.2492 18 1 1.6716 -0.2179 2.1430 19 6 3.5838 -0.7352 1.2524 20 6 3.8995 -2.1548 1.7971 21 6 2.7253 -2.9681 1.1966 22 8 1.5949 -2.0827 1.2400 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.1110 -1.6562 -1.1949 27 1 3.5399 1.8343 -1.2167 28 1 4.6458 0.5362 -1.7268 29 1 6.7362 3.5676 -1.7997 30 1 3.9749 -0.6113 0.2424 31 1 3.9773 0.0324 1.9187 32 1 3.8729 -2.1725 2.8866 33 1 4.8582 -2.5152 1.4241 34 1 2.5334 -3.8563 1.7986 35 1 2.9458 -3.2501 0.1671 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408194700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:36 Heat of formation + Delta-G solvation = -135.589577 kcal Electronic energy + Delta-G solvation = -19124.322611 eV Core-core repulsion = 16055.973140 eV Total energy + Delta-G solvation = -3068.349471 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71930 -36.17641 -35.34542 -34.91748 -33.37911 -32.04672 -30.13510 -29.06043 -28.05193 -23.55929 -23.38383 -21.54989 -20.57113 -18.93078 -17.29657 -16.75273 -16.55577 -15.90267 -15.45780 -15.36350 -14.47134 -14.28854 -13.87911 -13.61090 -13.27712 -12.92047 -12.54083 -12.28701 -12.15998 -11.77776 -11.45317 -11.39251 -11.19481 -11.12878 -11.05512 -11.03653 -10.95794 -10.84214 -10.63336 -10.59102 -9.82057 -9.69354 -9.27911 -8.76866 -8.73486 -6.36661 -4.46636 1.34671 3.17912 3.25300 3.32457 3.61647 3.83303 4.21973 4.51932 4.73066 4.78880 4.88819 4.97664 5.08582 5.19782 5.28634 5.35863 5.46014 5.67327 5.69642 5.73358 5.79608 5.85649 5.98040 6.15085 6.19455 6.47685 6.58710 6.63582 6.74999 7.04779 7.42658 7.50212 7.72255 8.55468 9.21270 10.75058 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.006675 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.999308 B = 4194.039228 C = 4707.582191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 H 0.093 0.907 4 N -1.122 6.122 5 S 2.581 3.419 6 O -0.979 6.979 7 O -0.983 6.983 8 C -0.421 4.421 9 C -0.533 4.533 10 H 0.069 0.931 11 C 0.076 3.924 12 N -0.878 5.878 13 Si 0.904 3.096 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.278 1.278 17 C 0.077 3.923 18 H 0.089 0.911 19 C -0.157 4.157 20 C -0.155 4.155 21 C 0.048 3.952 22 O -0.373 6.373 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.408 0.592 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.267 0.733 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 -7.620 9.526 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.111 0.889 4 N -0.878 5.878 5 S 2.681 3.319 6 O -0.969 6.969 7 O -0.974 6.974 8 C -0.556 4.556 9 C -0.572 4.572 10 H 0.087 0.913 11 C -0.130 4.130 12 N -0.515 5.515 13 Si 0.730 3.270 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.204 1.204 17 C 0.018 3.982 18 H 0.106 0.894 19 C -0.194 4.194 20 C -0.193 4.193 21 C -0.029 4.029 22 O -0.292 6.292 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.241 0.759 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.851 -7.484 8.795 12.525 hybrid contribution 1.160 0.391 -0.090 1.228 sum -3.691 -7.093 8.705 11.820 Atomic orbital electron populations 1.22211 0.94920 1.02737 1.02509 1.21055 0.95089 0.95723 0.84592 0.88895 1.55876 1.82883 1.19087 1.29921 1.05921 0.77820 0.75058 0.73139 1.93474 1.49355 1.70274 1.83805 1.93482 1.84977 1.59362 1.59557 1.27758 1.11848 1.08943 1.07088 1.20363 1.17032 1.24370 0.95447 0.91251 1.24917 0.95378 0.96201 0.96487 1.69952 1.20970 1.36863 1.23671 0.86324 0.78859 0.79793 0.82032 1.18985 1.20336 1.20358 1.23067 0.94007 0.83754 0.97364 0.89350 1.23254 0.94877 0.97494 1.03816 1.23238 0.99463 0.95505 1.01104 1.23405 0.85671 0.93448 1.00372 1.88410 1.30428 1.15155 1.95224 0.92309 0.90999 0.91839 0.75939 0.89920 0.89761 0.92313 0.89186 0.89657 0.90662 0.89879 0.90051 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.39 37.16 0.35 -1.98 16 2 C 0.14 2.09 2.50 -67.93 -0.17 1.92 16 3 H 0.09 1.35 7.15 -51.93 -0.37 0.98 16 4 N -1.12 -18.40 4.40 -4.89 -0.02 -18.42 16 5 S 2.58 54.57 5.30 -107.50 -0.57 54.00 16 6 O -0.98 -22.99 17.11 -57.54 -0.98 -23.98 16 7 O -0.98 -23.41 18.08 -57.54 -1.04 -24.45 16 8 C -0.42 -9.82 5.72 36.01 0.21 -9.61 16 9 C -0.53 -14.50 9.13 -34.44 -0.31 -14.81 16 10 H 0.07 1.88 7.71 -52.48 -0.40 1.47 16 11 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 12 N -0.88 -24.16 13.29 55.43 0.74 -23.42 16 13 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.08 0.96 3.32 -26.00 -0.09 0.87 16 18 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.16 -1.91 6.43 -24.78 -0.16 -2.07 16 20 C -0.16 -1.58 7.16 -24.48 -0.18 -1.76 16 21 C 0.05 0.51 7.50 38.19 0.29 0.80 16 22 O -0.37 -4.82 9.92 -35.23 -0.35 -5.17 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 1.15 7.42 -51.93 -0.39 0.76 16 25 H 0.06 0.89 7.74 -51.93 -0.40 0.48 16 26 H 0.41 6.13 7.59 -34.47 -0.26 5.87 16 27 H 0.08 1.88 7.44 -51.92 -0.39 1.49 16 28 H 0.08 1.94 8.05 -51.92 -0.42 1.52 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.09 1.25 7.07 -51.93 -0.37 0.88 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 LS Contribution 300.56 15.07 4.53 4.53 Total: -1.00 -32.67 300.56 -7.95 -40.62 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.07 Total: 5.22 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -0.16 Total: -24.66 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.71 Total: -41.84 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -2.37 Total: -53.59 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 54.57 SS G_CDS: -0.57 Total: 54.00 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.67 -7.95 -40.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408194700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.974 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds