Wall clock time and date at job start Mon Mar 30 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47434 * 2 1 4 4 N 1.46505 * 109.47404 * 240.00091 * 2 1 3 5 5 S 1.65601 * 119.99942 * 94.99707 * 4 2 1 6 6 O 1.42100 * 104.27822 * 308.93012 * 5 4 2 7 7 O 1.42103 * 104.27772 * 181.07676 * 5 4 2 8 8 C 1.81399 * 104.44938 * 65.00328 * 5 4 2 9 9 C 1.50699 * 109.47054 * 179.97438 * 8 5 4 10 10 H 1.08003 * 119.99963 * 359.97438 * 9 8 5 11 11 C 1.37874 * 120.00270 * 179.97438 * 9 8 5 12 12 N 1.31522 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47141 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47162 * 120.00342 * 13 11 9 16 16 H 1.48501 * 109.47494 * 240.00320 * 13 11 9 17 17 C 1.53002 * 109.47247 * 120.00288 * 2 1 3 18 18 H 1.08998 * 109.82200 * 300.56519 * 17 2 1 19 19 C 1.54387 * 109.82992 * 179.58930 * 17 2 1 20 20 C 1.55302 * 102.25160 * 219.12840 * 19 17 2 21 21 C 1.54949 * 100.94244 * 34.13238 * 20 19 17 22 22 O 1.43229 * 109.83295 * 61.45261 * 17 2 1 23 23 H 1.08999 * 109.46981 * 300.00170 * 1 2 3 24 24 H 1.09001 * 109.47320 * 60.00140 * 1 2 3 25 25 H 1.09001 * 109.46709 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99809 * 275.00458 * 4 2 1 27 27 H 1.09000 * 109.47070 * 299.99993 * 8 5 4 28 28 H 1.09001 * 109.46593 * 59.99990 * 8 5 4 29 29 H 0.96992 * 120.00038 * 180.02562 * 12 11 9 30 30 H 1.09006 * 110.84451 * 337.31432 * 19 17 2 31 31 H 1.08996 * 110.85034 * 100.93748 * 19 17 2 32 32 H 1.09004 * 111.12497 * 276.21788 * 20 19 17 33 33 H 1.08994 * 111.16360 * 152.06891 * 20 19 17 34 34 H 1.09003 * 110.30998 * 204.64287 * 21 20 19 35 35 H 1.08997 * 110.39417 * 82.51639 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4122 0.1772 -2.5505 6 8 1.2751 0.9966 -2.7846 7 8 2.8122 -0.8075 -3.4937 8 6 3.8313 1.1873 -2.0441 9 6 4.2871 2.0316 -3.2061 10 1 3.7747 1.9667 -4.1546 11 6 5.3584 2.8869 -3.0586 12 7 5.9828 2.9656 -1.9037 13 14 5.9240 3.9329 -4.4991 14 1 5.0620 3.6603 -5.6773 15 1 5.8258 5.3695 -4.1364 16 1 7.3333 3.6008 -4.8289 17 6 2.0400 -0.7213 1.2492 18 1 1.6716 -0.2179 2.1430 19 6 3.5838 -0.7352 1.2524 20 6 3.8995 -2.1548 1.7971 21 6 2.7253 -2.9681 1.1966 22 8 1.5949 -2.0827 1.2400 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.1110 -1.6562 -1.1949 27 1 3.5399 1.8343 -1.2167 28 1 4.6458 0.5362 -1.7268 29 1 6.7362 3.5676 -1.7997 30 1 3.9749 -0.6113 0.2424 31 1 3.9773 0.0324 1.9187 32 1 3.8729 -2.1725 2.8866 33 1 4.8582 -2.5152 1.4241 34 1 2.5334 -3.8563 1.7986 35 1 2.9458 -3.2501 0.1671 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408194700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:36 Heat of formation + Delta-G solvation = -160.311222 kcal Electronic energy + Delta-G solvation = -19125.394622 eV Core-core repulsion = 16055.973140 eV Total energy + Delta-G solvation = -3069.421482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69701 -37.98087 -36.86089 -36.50662 -35.40055 -32.95447 -31.37431 -31.02488 -29.05546 -25.55955 -24.40770 -22.43565 -21.69317 -20.51337 -19.12209 -18.34912 -17.71492 -17.32015 -17.15449 -16.59925 -16.16141 -15.90987 -15.01689 -14.69953 -14.52162 -14.31922 -14.08893 -13.79856 -13.53863 -13.41295 -13.03393 -12.94054 -12.76920 -12.70705 -12.63249 -12.52328 -12.36785 -12.01921 -11.83272 -11.76846 -11.59236 -11.23900 -10.77303 -10.50691 -10.15789 -8.40864 -6.57869 -0.40262 1.37327 1.38771 1.52219 2.04358 2.32475 2.90640 2.93045 3.03530 3.51049 3.60080 3.72746 4.03241 4.11275 4.26560 4.36768 4.41100 4.48647 4.68366 4.76536 4.81435 4.86900 4.95715 4.99704 5.03666 5.07435 5.23848 5.33311 5.39775 5.46329 5.73805 6.11651 6.19181 6.51526 7.13412 8.71319 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.006675 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.999308 B = 4194.039228 C = 4707.582191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 H 0.091 0.909 4 N -1.106 6.106 5 S 2.614 3.386 6 O -1.002 7.002 7 O -1.010 7.010 8 C -0.426 4.426 9 C -0.567 4.567 10 H 0.060 0.940 11 C 0.030 3.970 12 N -0.902 5.902 13 Si 0.959 3.041 14 H -0.267 1.267 15 H -0.266 1.266 16 H -0.267 1.267 17 C 0.083 3.917 18 H 0.112 0.888 19 C -0.164 4.164 20 C -0.148 4.148 21 C 0.040 3.960 22 O -0.385 6.385 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.417 0.583 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.273 0.727 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -7.897 10.601 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 H 0.109 0.891 4 N -0.865 5.865 5 S 2.713 3.287 6 O -0.991 6.991 7 O -1.001 7.001 8 C -0.560 4.560 9 C -0.606 4.606 10 H 0.078 0.922 11 C -0.174 4.174 12 N -0.539 5.539 13 Si 0.782 3.218 14 H -0.191 1.191 15 H -0.191 1.191 16 H -0.192 1.192 17 C 0.024 3.976 18 H 0.130 0.870 19 C -0.202 4.202 20 C -0.186 4.186 21 C -0.036 4.036 22 O -0.304 6.304 23 H 0.104 0.896 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.252 0.748 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.835 -7.765 9.875 13.461 hybrid contribution 1.127 0.428 -0.355 1.256 sum -3.708 -7.337 9.520 12.579 Atomic orbital electron populations 1.22180 0.94303 1.02891 1.02696 1.21384 0.95648 0.95932 0.84640 0.89119 1.55403 1.82376 1.19241 1.29518 1.04681 0.76536 0.74239 0.73286 1.93442 1.49774 1.71286 1.84638 1.93434 1.85261 1.59906 1.61480 1.27750 1.13118 1.09118 1.06043 1.20751 1.17804 1.25706 0.96353 0.92189 1.25733 0.95379 0.97230 0.99049 1.70008 1.21346 1.37455 1.25063 0.85475 0.78720 0.78639 0.78933 1.19068 1.19127 1.19217 1.23057 0.94043 0.83780 0.96692 0.87008 1.23286 0.94793 0.99245 1.02898 1.23237 0.99462 0.93811 1.02070 1.23586 0.85391 0.93917 1.00697 1.88398 1.31476 1.15361 1.95211 0.89638 0.93308 0.91654 0.74809 0.89755 0.89937 0.91755 0.91456 0.88823 0.88932 0.89365 0.87957 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 9.39 71.98 0.68 -3.66 16 2 C 0.13 3.69 2.50 44.99 0.11 3.80 16 3 H 0.09 2.59 7.15 -2.39 -0.02 2.57 16 4 N -1.11 -35.82 4.40 -169.38 -0.75 -36.56 16 5 S 2.61 111.65 5.30 -56.49 -0.30 111.35 16 6 O -1.00 -47.46 17.11 -127.65 -2.18 -49.64 16 7 O -1.01 -48.54 18.08 -127.65 -2.31 -50.85 16 8 C -0.43 -20.23 5.72 71.24 0.41 -19.82 16 9 C -0.57 -31.32 9.13 25.60 0.23 -31.09 16 10 H 0.06 3.32 7.71 -2.91 -0.02 3.30 16 11 C 0.03 1.61 5.46 84.65 0.46 2.08 16 12 N -0.90 -49.61 13.29 21.45 0.28 -49.32 16 13 Si 0.96 42.22 29.54 68.60 2.03 44.25 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 17 C 0.08 1.90 3.32 31.07 0.10 2.01 16 18 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 19 C -0.16 -3.76 6.43 31.86 0.20 -3.55 16 20 C -0.15 -2.68 7.16 32.05 0.23 -2.45 16 21 C 0.04 0.78 7.50 72.65 0.54 1.32 16 22 O -0.38 -9.06 9.92 -148.98 -1.48 -10.54 16 23 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.53 7.42 -2.39 -0.02 1.51 16 25 H 0.06 1.72 7.74 -2.39 -0.02 1.70 16 26 H 0.42 12.25 7.59 -96.74 -0.73 11.51 16 27 H 0.08 3.91 7.44 -2.39 -0.02 3.89 16 28 H 0.08 3.89 8.05 -2.39 -0.02 3.87 16 29 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 30 H 0.07 1.84 7.07 -2.38 -0.02 1.83 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 32 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.12 7.67 -2.39 -0.02 1.10 16 Total: -1.00 -68.61 300.56 -1.38 -69.99 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.35 Total: 22.70 kcal Atomic # 6 Polarization: -54.34 SS G_CDS: 2.97 Total: -51.37 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -0.46 Total: -85.89 kcal Atomic # 8 Polarization: -105.06 SS G_CDS: -5.97 Total: -111.03 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 111.65 SS G_CDS: -0.30 Total: 111.35 kcal Total: -68.61 -1.38 -69.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408194700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.320 kcal (2) G-P(sol) polarization free energy of solvation -68.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds