Wall clock time and date at job start Mon Mar 30 2020 04:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47137 * 2 1 4 4 H 1.09002 * 109.67935 * 62.50551 * 3 2 1 5 5 C 1.53295 * 109.68219 * 301.94729 * 3 2 1 6 6 O 1.42962 * 109.22245 * 187.97395 * 5 3 2 7 7 C 1.42959 * 114.16440 * 62.58469 * 6 5 3 8 8 C 1.53301 * 109.22447 * 297.41345 * 7 6 5 9 9 N 1.47151 * 109.68190 * 183.02118 * 3 2 1 10 10 S 1.65608 * 120.98369 * 350.28323 * 9 3 2 11 11 O 1.42096 * 104.27895 * 195.94678 * 10 9 3 12 12 O 1.42104 * 104.27067 * 323.80117 * 10 9 3 13 13 C 1.81400 * 104.45036 * 79.87106 * 10 9 3 14 14 C 1.50696 * 109.47058 * 180.02562 * 13 10 9 15 15 H 1.08004 * 120.00055 * 359.97438 * 14 13 10 16 16 C 1.37879 * 119.99812 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99683 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00040 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47176 * 89.99956 * 18 16 14 20 20 H 1.48503 * 109.47201 * 209.99726 * 18 16 14 21 21 H 1.48496 * 109.47503 * 329.99839 * 18 16 14 22 22 H 1.09001 * 109.47363 * 305.79912 * 1 2 3 23 23 H 1.09002 * 109.46993 * 65.79484 * 1 2 3 24 24 H 1.08994 * 109.47141 * 185.79515 * 1 2 3 25 25 H 1.09008 * 109.47054 * 119.99695 * 2 1 3 26 26 H 1.08997 * 109.47725 * 239.99973 * 2 1 3 27 27 H 1.08994 * 109.51325 * 307.89848 * 5 3 2 28 28 H 1.09007 * 109.50780 * 68.05463 * 5 3 2 29 29 H 1.09002 * 109.51119 * 177.49617 * 7 6 5 30 30 H 1.08992 * 109.51790 * 57.34104 * 7 6 5 31 31 H 1.08996 * 109.68581 * 292.58491 * 8 7 6 32 32 H 1.08995 * 109.71230 * 172.04557 * 8 7 6 33 33 H 1.09004 * 109.47017 * 300.00003 * 13 10 9 34 34 H 1.09002 * 109.47183 * 60.00169 * 13 10 9 35 35 H 0.97003 * 120.00178 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7156 1.9466 0.9104 5 6 1.4920 2.1839 -1.2248 6 8 2.1178 3.4659 -1.3179 7 6 3.5329 3.4135 -1.5141 8 6 4.1855 2.7352 -0.3041 9 7 3.5097 1.4486 -0.0730 10 16 4.3776 0.0487 0.0991 11 8 5.7054 0.4882 0.3498 12 8 3.6556 -0.6937 1.0722 13 6 4.2684 -0.7541 -1.5239 14 6 5.0286 -2.0549 -1.4930 15 1 5.5279 -2.3672 -0.5877 16 6 5.0876 -2.8458 -2.6209 17 7 5.7514 -3.9807 -2.5941 18 14 4.2246 -2.3052 -4.1869 19 1 5.1561 -1.4930 -5.0103 20 1 3.7992 -3.5021 -4.9561 21 1 3.0325 -1.4908 -3.8394 22 1 -0.3634 0.6011 0.8335 23 1 -0.3633 0.4214 -0.9373 24 1 -0.3633 -1.0224 0.1038 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.7063 1.6080 -2.1249 28 1 0.4144 2.3114 -1.1210 29 1 3.9236 4.4257 -1.6185 30 1 3.7546 2.8421 -2.4153 31 1 4.0771 3.3699 0.5754 32 1 5.2430 2.5636 -0.5048 33 1 3.2230 -0.9501 -1.7627 34 1 4.6979 -0.0998 -2.2825 35 1 5.7927 -4.5374 -3.3874 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408456990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:52 Heat of formation + Delta-G solvation = -135.005739 kcal Electronic energy + Delta-G solvation = -19638.359150 eV Core-core repulsion = 16570.034996 eV Total energy + Delta-G solvation = -3068.324154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48295 -38.38681 -37.01770 -36.36881 -35.38870 -34.50955 -31.83715 -30.64325 -27.69023 -25.93608 -25.15275 -22.93542 -22.11693 -19.95124 -19.34151 -18.29942 -17.67157 -17.45489 -17.16465 -16.25343 -16.13238 -15.87655 -15.76629 -15.73456 -14.79312 -14.58403 -14.16272 -13.95178 -13.68281 -13.57451 -13.15075 -13.04587 -12.99374 -12.70374 -12.44509 -12.38962 -12.27218 -12.14389 -11.89745 -11.55179 -11.48412 -11.21952 -10.95444 -10.80492 -9.75316 -8.47481 -6.64182 -0.60742 1.30364 1.32922 1.44145 1.77925 2.24413 2.82801 2.89690 2.90727 3.28453 3.52563 3.75274 3.96989 4.04558 4.19969 4.26806 4.37303 4.42282 4.44671 4.53945 4.67242 4.70213 4.80776 4.87048 4.96903 5.10105 5.14414 5.27625 5.32859 5.51415 5.64148 5.78706 6.16187 6.39801 7.04293 8.67838 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.020047 B = 0.008568 C = 0.008215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.389353 B = 3267.293235 C = 3407.641300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.205 4.205 3 C 0.127 3.873 4 H 0.093 0.907 5 C 0.050 3.950 6 O -0.387 6.387 7 C 0.046 3.954 8 C 0.077 3.923 9 N -1.006 6.006 10 S 2.620 3.380 11 O -1.002 7.002 12 O -0.987 6.987 13 C -0.482 4.482 14 C -0.554 4.554 15 H 0.037 0.963 16 C 0.027 3.973 17 N -0.931 5.931 18 Si 0.949 3.051 19 H -0.257 1.257 20 H -0.276 1.276 21 H -0.232 1.232 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.542 15.419 -0.955 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.243 4.243 3 C 0.022 3.978 4 H 0.111 0.889 5 C -0.028 4.028 6 O -0.305 6.305 7 C -0.032 4.032 8 C -0.048 4.048 9 N -0.845 5.845 10 S 2.720 3.280 11 O -0.993 6.993 12 O -0.977 6.977 13 C -0.615 4.615 14 C -0.592 4.592 15 H 0.056 0.944 16 C -0.175 4.175 17 N -0.568 5.568 18 Si 0.769 3.231 19 H -0.182 1.182 20 H -0.201 1.201 21 H -0.154 1.154 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.117 15.184 -0.193 18.820 hybrid contribution 0.360 -0.875 -0.988 1.368 sum -10.757 14.309 -1.181 17.940 Atomic orbital electron populations 1.21667 0.91559 1.02954 1.03345 1.22949 1.00753 0.95226 1.05395 1.21827 0.77652 0.97422 1.00926 0.88869 1.23236 0.99183 0.84347 0.96001 1.87912 1.20665 1.28425 1.93471 1.23144 0.81033 1.03286 0.95731 1.22341 0.97796 0.83931 1.00714 1.57942 1.15802 1.21522 1.89283 1.04522 0.72192 0.73107 0.78168 1.93418 1.39144 1.80913 1.85779 1.93385 1.71893 1.73065 1.59341 1.28476 1.06713 1.06993 1.19312 1.20298 1.35128 1.03792 1.00026 0.94436 1.26006 0.94697 0.93911 1.02896 1.70017 1.41729 1.13434 1.31659 0.85674 0.80575 0.79193 0.77623 1.18163 1.20103 1.15422 0.90833 0.90706 0.92092 0.87512 0.92041 0.92402 0.85034 0.84825 0.92288 0.89371 0.88412 0.87392 0.88180 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.35 71.98 0.67 -2.05 16 2 C -0.20 -5.79 4.22 30.59 0.13 -5.66 16 3 C 0.13 3.27 3.18 44.97 0.14 3.41 16 4 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 5 C 0.05 1.05 5.63 72.08 0.41 1.45 16 6 O -0.39 -8.56 10.74 -148.98 -1.60 -10.16 16 7 C 0.05 0.93 6.98 72.08 0.50 1.43 16 8 C 0.08 1.93 6.56 86.36 0.57 2.50 16 9 N -1.01 -31.01 3.26 -489.36 -1.60 -32.60 16 10 S 2.62 109.46 4.77 -56.49 -0.27 109.19 16 11 O -1.00 -47.34 16.50 -127.65 -2.11 -49.45 16 12 O -0.99 -45.21 14.19 -127.65 -1.81 -47.02 16 13 C -0.48 -21.16 4.78 71.23 0.34 -20.82 16 14 C -0.55 -31.53 9.68 25.60 0.25 -31.28 16 15 H 0.04 2.40 7.96 -2.91 -0.02 2.38 16 16 C 0.03 1.50 5.47 84.66 0.46 1.96 16 17 N -0.93 -56.62 13.96 21.45 0.30 -56.32 16 18 Si 0.95 40.44 27.47 68.60 1.88 42.33 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.23 -8.58 6.54 99.48 0.65 -7.93 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.07 1.15 6.93 -2.39 -0.02 1.13 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.11 3.72 5.19 -5.58 -0.03 3.69 16 26 H 0.06 1.87 5.14 -2.39 -0.01 1.86 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.13 1.99 7.03 -2.38 -0.02 1.97 16 29 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 2.57 6.93 -2.39 -0.02 2.55 16 33 H 0.11 4.27 4.70 -2.39 -0.01 4.26 16 34 H 0.10 3.93 7.57 -2.39 -0.02 3.91 16 35 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -73.68 284.23 -0.71 -74.40 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 1.01 Total: 18.70 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 3.47 Total: -49.05 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -1.30 Total: -88.92 kcal Atomic # 8 Polarization: -101.11 SS G_CDS: -5.52 Total: -106.63 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.88 Total: 42.33 kcal Atomic # 16 Polarization: 109.46 SS G_CDS: -0.27 Total: 109.19 kcal Total: -73.68 -0.71 -74.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408456990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.611 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds