Wall clock time and date at job start Mon Mar 30 2020 04:30:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.46784 * 2 1
4 4 H 1.09004 * 109.71050 * 307.10370 * 3 2 1
5 5 C 1.53290 * 109.68307 * 67.63959 * 3 2 1
6 6 O 1.42966 * 109.22302 * 172.02344 * 5 3 2
7 7 C 1.42965 * 114.16624 * 297.41909 * 6 5 3
8 8 C 1.53302 * 109.21966 * 62.58107 * 7 6 5
9 9 N 1.47150 * 109.67710 * 186.56790 * 3 2 1
10 10 S 1.65599 * 120.98566 * 9.47035 * 9 3 2
11 11 O 1.42101 * 104.27745 * 194.15972 * 10 9 3
12 12 O 1.42103 * 104.27652 * 322.01234 * 10 9 3
13 13 C 1.81397 * 104.45061 * 78.08642 * 10 9 3
14 14 C 1.50704 * 109.47221 * 177.74106 * 13 10 9
15 15 H 1.08004 * 119.99508 * 359.97438 * 14 13 10
16 16 C 1.37868 * 120.00268 * 179.97438 * 14 13 10
17 17 N 1.31512 * 120.00284 * 179.97438 * 16 14 13
18 18 Si 1.86808 * 119.99956 * 0.02562 * 16 14 13
19 19 H 1.48500 * 109.47097 * 89.99803 * 18 16 14
20 20 H 1.48494 * 109.46897 * 209.99930 * 18 16 14
21 21 H 1.48496 * 109.46926 * 329.99713 * 18 16 14
22 22 H 1.09000 * 109.47590 * 54.35269 * 1 2 3
23 23 H 1.08998 * 109.47295 * 174.35626 * 1 2 3
24 24 H 1.09001 * 109.47315 * 294.35556 * 1 2 3
25 25 H 1.08993 * 109.46875 * 240.00257 * 2 1 3
26 26 H 1.08998 * 109.46973 * 119.99641 * 2 1 3
27 27 H 1.08993 * 109.51778 * 291.95033 * 5 3 2
28 28 H 1.09002 * 109.51031 * 52.09822 * 5 3 2
29 29 H 1.08993 * 109.51497 * 182.50106 * 7 6 5
30 30 H 1.09003 * 109.51144 * 302.61011 * 7 6 5
31 31 H 1.09002 * 109.67735 * 187.97173 * 8 7 6
32 32 H 1.08996 * 109.67732 * 67.41979 * 8 7 6
33 33 H 1.09004 * 109.46910 * 297.73650 * 13 10 9
34 34 H 1.08994 * 109.47204 * 57.73836 * 13 10 9
35 35 H 0.97000 * 120.00266 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.5788 1.9955 -0.8184
5 6 1.6943 2.1124 1.3348
6 8 2.3326 3.3900 1.3995
7 6 3.7607 3.3331 1.3679
8 6 4.2121 2.7258 0.0346
9 7 3.5029 1.4510 -0.1585
10 16 4.3274 0.0655 -0.5363
11 8 5.6870 0.3840 -0.2731
12 8 3.6582 -0.9515 0.1966
13 6 4.0575 -0.1507 -2.3170
14 6 4.8131 -1.3634 -2.7961
15 1 5.3977 -1.9455 -2.0991
16 6 4.7582 -1.7296 -4.1241
17 7 5.4181 -2.7876 -4.5423
18 14 3.7477 -0.7222 -5.3299
19 1 4.5969 0.3456 -5.9163
20 1 3.2445 -1.6051 -6.4126
21 1 2.5986 -0.1063 -4.6190
22 1 -0.3634 0.5989 -0.8351
23 1 -0.3634 -1.0227 -0.1011
24 1 -0.3634 0.4238 0.9362
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5138 0.8900
27 1 0.6145 2.2406 1.4090
28 1 2.0448 1.4882 2.1568
29 1 4.1675 4.3395 1.4657
30 1 4.1187 2.7141 2.1905
31 1 5.2873 2.5479 0.0576
32 1 3.9697 3.4079 -0.7802
33 1 2.9932 -0.2864 -2.5093
34 1 4.4129 0.7322 -2.8482
35 1 5.3797 -3.0450 -5.4768
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000408456991.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:30:55
Heat of formation + Delta-G solvation = -111.081140 kcal
Electronic energy + Delta-G solvation = -19484.818384 eV
Core-core repulsion = 16417.531678 eV
Total energy + Delta-G solvation = -3067.286706 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.42410 -36.75725 -35.46292 -34.99752 -33.41629 -33.21830 -29.84428 -29.70216
-26.67173 -24.83789 -23.04985 -21.85866 -21.10263 -18.38197 -17.52436 -16.62835
-16.57648 -15.83515 -15.75856 -15.06764 -14.92224 -14.59820 -14.25715 -14.11794
-13.34829 -13.10973 -12.74898 -12.60459 -12.45171 -12.11478 -11.68513 -11.51887
-11.44088 -11.33120 -11.08087 -10.97359 -10.88904 -10.47131 -10.39844 -10.28757
-9.93072 -9.79031 -9.48923 -8.87420 -8.55389 -6.35587 -4.44928 1.05055
3.11261 3.19132 3.19613 3.24064 3.80466 4.18151 4.56668 4.68052
4.69633 4.82815 4.96470 5.09507 5.14046 5.19499 5.37719 5.42255
5.47074 5.54513 5.60326 5.76363 5.79416 5.94268 6.08179 6.15847
6.20001 6.27822 6.36757 6.65785 6.82885 7.08751 7.15995 7.96199
8.55636 9.19662 10.75413
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.024794 B = 0.007638 C = 0.007052
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1129.027132 B = 3664.810975 C = 3969.307102
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.156 4.156
3 C 0.123 3.877
4 H 0.079 0.921
5 C 0.056 3.944
6 O -0.383 6.383
7 C 0.051 3.949
8 C 0.082 3.918
9 N -1.012 6.012
10 S 2.602 3.398
11 O -0.972 6.972
12 O -0.965 6.965
13 C -0.471 4.471
14 C -0.534 4.534
15 H 0.085 0.915
16 C 0.089 3.911
17 N -0.879 5.879
18 Si 0.883 3.117
19 H -0.271 1.271
20 H -0.280 1.280
21 H -0.263 1.263
22 H 0.053 0.947
23 H 0.062 0.938
24 H 0.054 0.946
25 H 0.077 0.923
26 H 0.109 0.891
27 H 0.102 0.898
28 H 0.057 0.943
29 H 0.102 0.898
30 H 0.055 0.945
31 H 0.107 0.893
32 H 0.072 0.928
33 H 0.084 0.916
34 H 0.079 0.921
35 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.554 11.367 8.308 16.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.194 4.194
3 C 0.017 3.983
4 H 0.097 0.903
5 C -0.022 4.022
6 O -0.301 6.301
7 C -0.027 4.027
8 C -0.044 4.044
9 N -0.849 5.849
10 S 2.703 3.297
11 O -0.963 6.963
12 O -0.955 6.955
13 C -0.606 4.606
14 C -0.573 4.573
15 H 0.103 0.897
16 C -0.118 4.118
17 N -0.515 5.515
18 Si 0.709 3.291
19 H -0.196 1.196
20 H -0.206 1.206
21 H -0.187 1.187
22 H 0.072 0.928
23 H 0.081 0.919
24 H 0.073 0.927
25 H 0.095 0.905
26 H 0.127 0.873
27 H 0.120 0.880
28 H 0.076 0.924
29 H 0.120 0.880
30 H 0.073 0.927
31 H 0.125 0.875
32 H 0.090 0.910
33 H 0.102 0.898
34 H 0.097 0.903
35 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -8.094 10.905 8.806 16.185
hybrid contribution -0.539 0.415 -1.487 1.636
sum -8.633 11.320 7.318 16.007
Atomic orbital electron populations
1.21787 0.95156 1.02326 1.01409 1.22463 0.96471 0.93852 1.06610
1.21701 0.80021 0.98019 0.98592 0.90346 1.23016 0.98026 0.84936
0.96231 1.87900 1.18949 1.28701 1.94567 1.22921 0.81511 1.01755
0.96550 1.22080 0.98615 0.85484 0.98184 1.58257 1.15190 1.24757
1.86649 1.05364 0.72956 0.72238 0.79176 1.93455 1.34220 1.83035
1.85550 1.93542 1.74295 1.57240 1.70441 1.28294 1.06475 1.06451
1.19353 1.20073 1.31735 1.08822 0.96647 0.89682 1.24889 0.94453
0.94560 0.97849 1.69866 1.40324 1.24495 1.16802 0.86720 0.81072
0.80477 0.80875 1.19613 1.20569 1.18745 0.92773 0.91914 0.92737
0.90479 0.87284 0.88008 0.92435 0.87966 0.92680 0.87460 0.90984
0.89796 0.90286 0.91815
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.69 9.60 37.16 0.36 -1.34 16
2 C -0.16 -2.31 3.77 -26.73 -0.10 -2.41 16
3 C 0.12 1.73 3.14 -67.42 -0.21 1.52 16
4 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
5 C 0.06 0.69 5.90 37.31 0.22 0.91 16
6 O -0.38 -5.02 10.74 -35.23 -0.38 -5.40 16
7 C 0.05 0.61 6.99 37.31 0.26 0.87 16
8 C 0.08 1.12 6.70 -3.53 -0.02 1.10 16
9 N -1.01 -16.33 3.26 -106.03 -0.35 -16.68 16
10 S 2.60 53.57 4.79 -107.50 -0.51 53.06 16
11 O -0.97 -22.35 16.35 -57.54 -0.94 -23.30 16
12 O -0.96 -21.11 13.49 -57.54 -0.78 -21.89 16
13 C -0.47 -10.60 4.79 36.01 0.17 -10.43 16
14 C -0.53 -14.88 9.68 -34.44 -0.33 -15.21 16
15 H 0.09 2.56 7.96 -52.48 -0.42 2.14 16
16 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16
17 N -0.88 -26.03 13.96 55.43 0.77 -25.26 16
18 Si 0.88 20.45 27.47 -169.99 -4.67 15.78 16
19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
21 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16
22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
24 H 0.05 0.51 7.14 -51.93 -0.37 0.14 16
25 H 0.08 1.31 5.10 -51.93 -0.26 1.04 16
26 H 0.11 1.77 6.41 -51.93 -0.33 1.44 16
27 H 0.10 1.00 7.21 -51.93 -0.37 0.63 16
28 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16
29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.11 1.51 6.65 -51.93 -0.35 1.17 16
32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.08 1.76 5.88 -51.92 -0.31 1.45 16
34 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16
35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
LS Contribution 286.03 15.07 4.31 4.31
Total: -1.00 -32.92 286.03 -7.23 -40.15
By element:
Atomic # 1 Polarization: 6.74 SS G_CDS: -4.93 Total: 1.82 kcal
Atomic # 6 Polarization: -22.84 SS G_CDS: 0.24 Total: -22.59 kcal
Atomic # 7 Polarization: -42.37 SS G_CDS: 0.43 Total: -41.94 kcal
Atomic # 8 Polarization: -48.49 SS G_CDS: -2.10 Total: -50.58 kcal
Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal
Atomic # 16 Polarization: 53.57 SS G_CDS: -0.51 Total: 53.06 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -32.92 -7.23 -40.15 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408456991.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.934 kcal
(2) G-P(sol) polarization free energy of solvation -32.921 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.855 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.081 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds