Wall clock time and date at job start Mon Mar 30 2020 04:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46784 * 2 1 4 4 H 1.09004 * 109.71050 * 307.10370 * 3 2 1 5 5 C 1.53290 * 109.68307 * 67.63959 * 3 2 1 6 6 O 1.42966 * 109.22302 * 172.02344 * 5 3 2 7 7 C 1.42965 * 114.16624 * 297.41909 * 6 5 3 8 8 C 1.53302 * 109.21966 * 62.58107 * 7 6 5 9 9 N 1.47150 * 109.67710 * 186.56790 * 3 2 1 10 10 S 1.65599 * 120.98566 * 9.47035 * 9 3 2 11 11 O 1.42101 * 104.27745 * 194.15972 * 10 9 3 12 12 O 1.42103 * 104.27652 * 322.01234 * 10 9 3 13 13 C 1.81397 * 104.45061 * 78.08642 * 10 9 3 14 14 C 1.50704 * 109.47221 * 177.74106 * 13 10 9 15 15 H 1.08004 * 119.99508 * 359.97438 * 14 13 10 16 16 C 1.37868 * 120.00268 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00284 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 119.99956 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47097 * 89.99803 * 18 16 14 20 20 H 1.48494 * 109.46897 * 209.99930 * 18 16 14 21 21 H 1.48496 * 109.46926 * 329.99713 * 18 16 14 22 22 H 1.09000 * 109.47590 * 54.35269 * 1 2 3 23 23 H 1.08998 * 109.47295 * 174.35626 * 1 2 3 24 24 H 1.09001 * 109.47315 * 294.35556 * 1 2 3 25 25 H 1.08993 * 109.46875 * 240.00257 * 2 1 3 26 26 H 1.08998 * 109.46973 * 119.99641 * 2 1 3 27 27 H 1.08993 * 109.51778 * 291.95033 * 5 3 2 28 28 H 1.09002 * 109.51031 * 52.09822 * 5 3 2 29 29 H 1.08993 * 109.51497 * 182.50106 * 7 6 5 30 30 H 1.09003 * 109.51144 * 302.61011 * 7 6 5 31 31 H 1.09002 * 109.67735 * 187.97173 * 8 7 6 32 32 H 1.08996 * 109.67732 * 67.41979 * 8 7 6 33 33 H 1.09004 * 109.46910 * 297.73650 * 13 10 9 34 34 H 1.08994 * 109.47204 * 57.73836 * 13 10 9 35 35 H 0.97000 * 120.00266 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5788 1.9955 -0.8184 5 6 1.6943 2.1124 1.3348 6 8 2.3326 3.3900 1.3995 7 6 3.7607 3.3331 1.3679 8 6 4.2121 2.7258 0.0346 9 7 3.5029 1.4510 -0.1585 10 16 4.3274 0.0655 -0.5363 11 8 5.6870 0.3840 -0.2731 12 8 3.6582 -0.9515 0.1966 13 6 4.0575 -0.1507 -2.3170 14 6 4.8131 -1.3634 -2.7961 15 1 5.3977 -1.9455 -2.0991 16 6 4.7582 -1.7296 -4.1241 17 7 5.4181 -2.7876 -4.5423 18 14 3.7477 -0.7222 -5.3299 19 1 4.5969 0.3456 -5.9163 20 1 3.2445 -1.6051 -6.4126 21 1 2.5986 -0.1063 -4.6190 22 1 -0.3634 0.5989 -0.8351 23 1 -0.3634 -1.0227 -0.1011 24 1 -0.3634 0.4238 0.9362 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.6145 2.2406 1.4090 28 1 2.0448 1.4882 2.1568 29 1 4.1675 4.3395 1.4657 30 1 4.1187 2.7141 2.1905 31 1 5.2873 2.5479 0.0576 32 1 3.9697 3.4079 -0.7802 33 1 2.9932 -0.2864 -2.5093 34 1 4.4129 0.7322 -2.8482 35 1 5.3797 -3.0450 -5.4768 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408456991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:55 Heat of formation + Delta-G solvation = -111.081140 kcal Electronic energy + Delta-G solvation = -19484.818384 eV Core-core repulsion = 16417.531678 eV Total energy + Delta-G solvation = -3067.286706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.42410 -36.75725 -35.46292 -34.99752 -33.41629 -33.21830 -29.84428 -29.70216 -26.67173 -24.83789 -23.04985 -21.85866 -21.10263 -18.38197 -17.52436 -16.62835 -16.57648 -15.83515 -15.75856 -15.06764 -14.92224 -14.59820 -14.25715 -14.11794 -13.34829 -13.10973 -12.74898 -12.60459 -12.45171 -12.11478 -11.68513 -11.51887 -11.44088 -11.33120 -11.08087 -10.97359 -10.88904 -10.47131 -10.39844 -10.28757 -9.93072 -9.79031 -9.48923 -8.87420 -8.55389 -6.35587 -4.44928 1.05055 3.11261 3.19132 3.19613 3.24064 3.80466 4.18151 4.56668 4.68052 4.69633 4.82815 4.96470 5.09507 5.14046 5.19499 5.37719 5.42255 5.47074 5.54513 5.60326 5.76363 5.79416 5.94268 6.08179 6.15847 6.20001 6.27822 6.36757 6.65785 6.82885 7.08751 7.15995 7.96199 8.55636 9.19662 10.75413 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.024794 B = 0.007638 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.027132 B = 3664.810975 C = 3969.307102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.123 3.877 4 H 0.079 0.921 5 C 0.056 3.944 6 O -0.383 6.383 7 C 0.051 3.949 8 C 0.082 3.918 9 N -1.012 6.012 10 S 2.602 3.398 11 O -0.972 6.972 12 O -0.965 6.965 13 C -0.471 4.471 14 C -0.534 4.534 15 H 0.085 0.915 16 C 0.089 3.911 17 N -0.879 5.879 18 Si 0.883 3.117 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.263 1.263 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 11.367 8.308 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C 0.017 3.983 4 H 0.097 0.903 5 C -0.022 4.022 6 O -0.301 6.301 7 C -0.027 4.027 8 C -0.044 4.044 9 N -0.849 5.849 10 S 2.703 3.297 11 O -0.963 6.963 12 O -0.955 6.955 13 C -0.606 4.606 14 C -0.573 4.573 15 H 0.103 0.897 16 C -0.118 4.118 17 N -0.515 5.515 18 Si 0.709 3.291 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.187 1.187 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.094 10.905 8.806 16.185 hybrid contribution -0.539 0.415 -1.487 1.636 sum -8.633 11.320 7.318 16.007 Atomic orbital electron populations 1.21787 0.95156 1.02326 1.01409 1.22463 0.96471 0.93852 1.06610 1.21701 0.80021 0.98019 0.98592 0.90346 1.23016 0.98026 0.84936 0.96231 1.87900 1.18949 1.28701 1.94567 1.22921 0.81511 1.01755 0.96550 1.22080 0.98615 0.85484 0.98184 1.58257 1.15190 1.24757 1.86649 1.05364 0.72956 0.72238 0.79176 1.93455 1.34220 1.83035 1.85550 1.93542 1.74295 1.57240 1.70441 1.28294 1.06475 1.06451 1.19353 1.20073 1.31735 1.08822 0.96647 0.89682 1.24889 0.94453 0.94560 0.97849 1.69866 1.40324 1.24495 1.16802 0.86720 0.81072 0.80477 0.80875 1.19613 1.20569 1.18745 0.92773 0.91914 0.92737 0.90479 0.87284 0.88008 0.92435 0.87966 0.92680 0.87460 0.90984 0.89796 0.90286 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.60 37.16 0.36 -1.34 16 2 C -0.16 -2.31 3.77 -26.73 -0.10 -2.41 16 3 C 0.12 1.73 3.14 -67.42 -0.21 1.52 16 4 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.06 0.69 5.90 37.31 0.22 0.91 16 6 O -0.38 -5.02 10.74 -35.23 -0.38 -5.40 16 7 C 0.05 0.61 6.99 37.31 0.26 0.87 16 8 C 0.08 1.12 6.70 -3.53 -0.02 1.10 16 9 N -1.01 -16.33 3.26 -106.03 -0.35 -16.68 16 10 S 2.60 53.57 4.79 -107.50 -0.51 53.06 16 11 O -0.97 -22.35 16.35 -57.54 -0.94 -23.30 16 12 O -0.96 -21.11 13.49 -57.54 -0.78 -21.89 16 13 C -0.47 -10.60 4.79 36.01 0.17 -10.43 16 14 C -0.53 -14.88 9.68 -34.44 -0.33 -15.21 16 15 H 0.09 2.56 7.96 -52.48 -0.42 2.14 16 16 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 17 N -0.88 -26.03 13.96 55.43 0.77 -25.26 16 18 Si 0.88 20.45 27.47 -169.99 -4.67 15.78 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.51 7.14 -51.93 -0.37 0.14 16 25 H 0.08 1.31 5.10 -51.93 -0.26 1.04 16 26 H 0.11 1.77 6.41 -51.93 -0.33 1.44 16 27 H 0.10 1.00 7.21 -51.93 -0.37 0.63 16 28 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 1.51 6.65 -51.93 -0.35 1.17 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.76 5.88 -51.92 -0.31 1.45 16 34 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 286.03 15.07 4.31 4.31 Total: -1.00 -32.92 286.03 -7.23 -40.15 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.93 Total: 1.82 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 0.24 Total: -22.59 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.43 Total: -41.94 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -2.10 Total: -50.58 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Atomic # 16 Polarization: 53.57 SS G_CDS: -0.51 Total: 53.06 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.92 -7.23 -40.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408456991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.934 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds