Wall clock time and date at job start Mon Mar 30 2020 04:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.68279 * 2 1 4 4 C 1.53300 * 109.68235 * 239.43880 * 2 1 3 5 5 H 1.08999 * 109.51558 * 172.60603 * 4 2 1 6 6 C 1.53000 * 109.50802 * 52.50503 * 4 2 1 7 7 O 1.42959 * 109.22303 * 292.58221 * 4 2 1 8 8 C 1.42958 * 114.16935 * 297.42059 * 7 4 2 9 9 C 1.52881 * 109.30041 * 62.44448 * 8 7 4 10 10 N 1.47148 * 108.60903 * 307.94033 * 9 8 7 11 11 S 1.65598 * 120.98089 * 230.50161 * 10 9 8 12 12 O 1.42099 * 104.27702 * 153.64642 * 11 10 9 13 13 O 1.42095 * 104.28003 * 25.78705 * 11 10 9 14 14 C 1.81400 * 104.44743 * 269.71329 * 11 10 9 15 15 C 1.50706 * 109.47256 * 179.97438 * 14 11 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 11 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47293 * 89.99746 * 19 17 15 21 21 H 1.48504 * 109.47104 * 209.99992 * 19 17 15 22 22 H 1.48495 * 109.47249 * 329.99739 * 19 17 15 23 23 H 1.09005 * 109.46987 * 299.48792 * 1 2 3 24 24 H 1.09003 * 109.47018 * 59.48349 * 1 2 3 25 25 H 1.08996 * 109.47378 * 179.48741 * 1 2 3 26 26 H 1.08997 * 109.47221 * 60.00029 * 6 4 2 27 27 H 1.09006 * 109.46899 * 179.97438 * 6 4 2 28 28 H 1.09001 * 109.47349 * 299.99789 * 6 4 2 29 29 H 1.08998 * 109.51758 * 182.50570 * 8 7 4 30 30 H 1.09006 * 109.50934 * 302.60058 * 8 7 4 31 31 H 1.09006 * 109.61657 * 188.11772 * 9 8 7 32 32 H 1.09000 * 109.52183 * 67.70536 * 9 8 7 33 33 H 1.09001 * 109.46713 * 60.00253 * 14 11 10 34 34 H 1.09000 * 109.47712 * 300.00561 * 14 11 10 35 35 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0463 -0.7339 -1.2429 5 1 3.1282 -0.6199 -1.3099 6 6 1.3918 -0.1436 -2.4935 7 8 1.7167 -2.1213 -1.1411 8 6 2.3258 -2.7878 -0.0328 9 6 1.8289 -2.1599 1.2696 10 7 2.0255 -0.7036 1.1937 11 16 2.7882 0.1183 2.4124 12 8 3.3383 1.2619 1.7731 13 8 3.6260 -0.8550 3.0207 14 6 1.4508 0.6006 3.5390 15 6 2.0261 1.3644 4.7038 16 1 3.0898 1.5423 4.7604 17 6 1.1945 1.8361 5.6972 18 7 -0.1009 1.6190 5.6285 19 14 1.9075 2.7836 7.1406 20 1 1.9331 4.2327 6.8173 21 1 1.0664 2.5595 8.3438 22 1 3.2898 2.3116 7.4081 23 1 -0.3633 0.5059 0.8946 24 1 -0.3633 0.5219 -0.8853 25 1 -0.3634 -1.0276 -0.0092 26 1 1.6398 0.9152 -2.5680 27 1 1.7597 -0.6656 -3.3769 28 1 0.3101 -0.2596 -2.4268 29 1 2.0608 -3.8449 -0.0531 30 1 3.4090 -2.6828 -0.0953 31 1 2.3945 -2.5635 2.1095 32 1 0.7695 -2.3810 1.3996 33 1 0.9445 -0.2926 3.9052 34 1 0.7374 1.2305 3.0077 35 1 -0.6860 1.9513 6.3273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408460046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:19 Heat of formation + Delta-G solvation = -123.337003 kcal Electronic energy + Delta-G solvation = -19290.752342 eV Core-core repulsion = 16222.934183 eV Total energy + Delta-G solvation = -3067.818160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.55263 -36.29413 -35.11603 -34.78867 -33.41719 -33.35415 -29.07363 -28.71995 -28.06710 -24.40232 -23.47052 -22.95490 -19.87483 -18.24833 -17.42647 -16.54099 -16.50638 -15.90405 -15.47985 -15.12293 -14.80673 -14.32361 -14.26054 -13.52782 -13.05618 -12.78650 -12.52890 -12.33587 -12.15232 -11.81053 -11.76041 -11.54402 -11.46257 -11.33834 -11.22028 -10.93479 -10.92534 -10.79623 -10.65329 -10.30056 -9.89455 -9.83824 -9.33733 -8.74082 -8.37873 -6.35988 -4.47159 1.22455 3.19185 3.24336 3.30141 3.35954 3.78922 4.21420 4.70120 4.75255 4.88426 4.96864 5.03689 5.11397 5.25056 5.26850 5.42913 5.49880 5.57415 5.60471 5.68360 5.82197 5.89495 5.97720 6.05116 6.09840 6.40490 6.47736 6.59261 6.77416 6.96310 7.24158 7.40852 7.72156 8.54993 9.20843 10.75592 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.034612 B = 0.006136 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.777852 B = 4562.060906 C = 4741.939298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 H 0.108 0.892 4 C 0.082 3.918 5 H 0.061 0.939 6 C -0.146 4.146 7 O -0.377 6.377 8 C 0.053 3.947 9 C 0.085 3.915 10 N -1.008 6.008 11 S 2.580 3.420 12 O -0.978 6.978 13 O -0.978 6.978 14 C -0.415 4.415 15 C -0.536 4.536 16 H 0.068 0.932 17 C 0.077 3.923 18 N -0.878 5.878 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.266 1.266 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 -5.712 -12.170 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 H 0.126 0.874 4 C 0.023 3.977 5 H 0.079 0.921 6 C -0.203 4.203 7 O -0.296 6.296 8 C -0.025 4.025 9 C -0.041 4.041 10 N -0.843 5.843 11 S 2.682 3.318 12 O -0.969 6.969 13 O -0.969 6.969 14 C -0.551 4.551 15 C -0.575 4.575 16 H 0.087 0.913 17 C -0.130 4.130 18 N -0.514 5.514 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.191 1.191 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.511 -5.650 -12.190 13.445 hybrid contribution -0.284 0.555 1.201 1.353 sum 0.227 -5.095 -10.989 12.115 Atomic orbital electron populations 1.22164 0.94648 1.02894 1.02454 1.21588 0.95217 0.97198 0.84936 0.87412 1.22386 0.98672 0.81951 0.94675 0.92107 1.21840 1.01946 1.00634 0.95902 1.87880 1.72252 1.21798 1.47682 1.22798 0.97231 0.96555 0.85897 1.21919 1.02204 0.80486 0.99524 1.58225 1.76976 1.15452 1.33650 1.06059 0.77910 0.73394 0.74425 1.93454 1.77505 1.51410 1.74497 1.93454 1.65544 1.60674 1.77210 1.27744 1.11465 1.06913 1.08994 1.20333 0.94205 1.37456 1.05538 0.91342 1.24927 0.94717 0.95171 0.98142 1.69957 1.03088 1.44160 1.34203 0.86373 0.79536 0.80201 0.80871 1.19865 1.20578 1.19083 0.91730 0.91471 0.91727 0.90769 0.91913 0.91124 0.88078 0.92887 0.87998 0.90969 0.89801 0.89782 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.64 37.16 0.32 -1.86 16 2 C 0.12 1.77 2.88 -67.42 -0.19 1.57 16 3 H 0.11 1.70 6.88 -51.93 -0.36 1.34 16 4 C 0.08 1.10 3.10 -26.58 -0.08 1.01 16 5 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.15 -1.50 9.01 37.16 0.33 -1.17 16 7 O -0.38 -5.15 10.01 -35.23 -0.35 -5.50 16 8 C 0.05 0.68 6.97 37.10 0.26 0.93 16 9 C 0.08 1.23 6.25 -3.75 -0.02 1.20 16 10 N -1.01 -17.18 2.97 -106.26 -0.32 -17.50 16 11 S 2.58 55.43 5.39 -107.50 -0.58 54.85 16 12 O -0.98 -22.97 16.62 -57.54 -0.96 -23.93 16 13 O -0.98 -22.95 16.61 -57.54 -0.96 -23.91 16 14 C -0.42 -10.03 5.93 36.01 0.21 -9.82 16 15 C -0.54 -14.82 9.13 -34.44 -0.31 -15.13 16 16 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16 17 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16 18 N -0.88 -24.73 13.29 55.43 0.74 -23.99 16 19 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.07 0.74 6.42 -51.93 -0.33 0.41 16 25 H 0.06 0.85 7.24 -51.93 -0.38 0.48 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.69 6.38 -51.93 -0.33 0.36 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.51 6.87 -51.93 -0.36 1.15 16 32 H 0.07 0.95 7.69 -51.93 -0.40 0.55 16 33 H 0.08 2.02 8.14 -51.92 -0.42 1.59 16 34 H 0.08 2.02 8.14 -51.92 -0.42 1.60 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 295.76 15.07 4.46 4.46 Total: -1.00 -32.73 295.76 -7.65 -40.37 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.08 Total: 0.49 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 0.42 Total: -21.24 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.42 Total: -41.49 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -2.26 Total: -53.34 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 55.43 SS G_CDS: -0.58 Total: 54.85 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.73 -7.65 -40.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.963 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds