Wall clock time and date at job start Mon Mar 30 2020 04:54:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.68279 * 2 1
4 4 C 1.53300 * 109.68235 * 239.43880 * 2 1 3
5 5 H 1.08999 * 109.51558 * 172.60603 * 4 2 1
6 6 C 1.53000 * 109.50802 * 52.50503 * 4 2 1
7 7 O 1.42959 * 109.22303 * 292.58221 * 4 2 1
8 8 C 1.42958 * 114.16935 * 297.42059 * 7 4 2
9 9 C 1.52881 * 109.30041 * 62.44448 * 8 7 4
10 10 N 1.47148 * 108.60903 * 307.94033 * 9 8 7
11 11 S 1.65598 * 120.98089 * 230.50161 * 10 9 8
12 12 O 1.42099 * 104.27702 * 153.64642 * 11 10 9
13 13 O 1.42095 * 104.28003 * 25.78705 * 11 10 9
14 14 C 1.81400 * 104.44743 * 269.71329 * 11 10 9
15 15 C 1.50706 * 109.47256 * 179.97438 * 14 11 10
16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 11
17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 11
18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14
19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14
20 20 H 1.48499 * 109.47293 * 89.99746 * 19 17 15
21 21 H 1.48504 * 109.47104 * 209.99992 * 19 17 15
22 22 H 1.48495 * 109.47249 * 329.99739 * 19 17 15
23 23 H 1.09005 * 109.46987 * 299.48792 * 1 2 3
24 24 H 1.09003 * 109.47018 * 59.48349 * 1 2 3
25 25 H 1.08996 * 109.47378 * 179.48741 * 1 2 3
26 26 H 1.08997 * 109.47221 * 60.00029 * 6 4 2
27 27 H 1.09006 * 109.46899 * 179.97438 * 6 4 2
28 28 H 1.09001 * 109.47349 * 299.99789 * 6 4 2
29 29 H 1.08998 * 109.51758 * 182.50570 * 8 7 4
30 30 H 1.09006 * 109.50934 * 302.60058 * 8 7 4
31 31 H 1.09006 * 109.61657 * 188.11772 * 9 8 7
32 32 H 1.09000 * 109.52183 * 67.70536 * 9 8 7
33 33 H 1.09001 * 109.46713 * 60.00253 * 14 11 10
34 34 H 1.09000 * 109.47712 * 300.00561 * 14 11 10
35 35 H 0.97004 * 119.99507 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8971 1.0263 0.0000
4 6 2.0463 -0.7339 -1.2429
5 1 3.1282 -0.6199 -1.3099
6 6 1.3918 -0.1436 -2.4935
7 8 1.7167 -2.1213 -1.1411
8 6 2.3258 -2.7878 -0.0328
9 6 1.8289 -2.1599 1.2696
10 7 2.0255 -0.7036 1.1937
11 16 2.7882 0.1183 2.4124
12 8 3.3383 1.2619 1.7731
13 8 3.6260 -0.8550 3.0207
14 6 1.4508 0.6006 3.5390
15 6 2.0261 1.3644 4.7038
16 1 3.0898 1.5423 4.7604
17 6 1.1945 1.8361 5.6972
18 7 -0.1009 1.6190 5.6285
19 14 1.9075 2.7836 7.1406
20 1 1.9331 4.2327 6.8173
21 1 1.0664 2.5595 8.3438
22 1 3.2898 2.3116 7.4081
23 1 -0.3633 0.5059 0.8946
24 1 -0.3633 0.5219 -0.8853
25 1 -0.3634 -1.0276 -0.0092
26 1 1.6398 0.9152 -2.5680
27 1 1.7597 -0.6656 -3.3769
28 1 0.3101 -0.2596 -2.4268
29 1 2.0608 -3.8449 -0.0531
30 1 3.4090 -2.6828 -0.0953
31 1 2.3945 -2.5635 2.1095
32 1 0.7695 -2.3810 1.3996
33 1 0.9445 -0.2926 3.9052
34 1 0.7374 1.2305 3.0077
35 1 -0.6860 1.9513 6.3273
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000408460046.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:54:19
Heat of formation + Delta-G solvation = -123.337003 kcal
Electronic energy + Delta-G solvation = -19290.752342 eV
Core-core repulsion = 16222.934183 eV
Total energy + Delta-G solvation = -3067.818160 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.55263 -36.29413 -35.11603 -34.78867 -33.41719 -33.35415 -29.07363 -28.71995
-28.06710 -24.40232 -23.47052 -22.95490 -19.87483 -18.24833 -17.42647 -16.54099
-16.50638 -15.90405 -15.47985 -15.12293 -14.80673 -14.32361 -14.26054 -13.52782
-13.05618 -12.78650 -12.52890 -12.33587 -12.15232 -11.81053 -11.76041 -11.54402
-11.46257 -11.33834 -11.22028 -10.93479 -10.92534 -10.79623 -10.65329 -10.30056
-9.89455 -9.83824 -9.33733 -8.74082 -8.37873 -6.35988 -4.47159 1.22455
3.19185 3.24336 3.30141 3.35954 3.78922 4.21420 4.70120 4.75255
4.88426 4.96864 5.03689 5.11397 5.25056 5.26850 5.42913 5.49880
5.57415 5.60471 5.68360 5.82197 5.89495 5.97720 6.05116 6.09840
6.40490 6.47736 6.59261 6.77416 6.96310 7.24158 7.40852 7.72156
8.54993 9.20843 10.75592
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.034612 B = 0.006136 C = 0.005903
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 808.777852 B = 4562.060906 C = 4741.939298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.117 3.883
3 H 0.108 0.892
4 C 0.082 3.918
5 H 0.061 0.939
6 C -0.146 4.146
7 O -0.377 6.377
8 C 0.053 3.947
9 C 0.085 3.915
10 N -1.008 6.008
11 S 2.580 3.420
12 O -0.978 6.978
13 O -0.978 6.978
14 C -0.415 4.415
15 C -0.536 4.536
16 H 0.068 0.932
17 C 0.077 3.923
18 N -0.878 5.878
19 Si 0.904 3.096
20 H -0.273 1.273
21 H -0.280 1.280
22 H -0.266 1.266
23 H 0.064 0.936
24 H 0.066 0.934
25 H 0.064 0.936
26 H 0.073 0.927
27 H 0.062 0.938
28 H 0.070 0.930
29 H 0.101 0.899
30 H 0.053 0.947
31 H 0.102 0.898
32 H 0.072 0.928
33 H 0.084 0.916
34 H 0.084 0.916
35 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.167 -5.712 -12.170 13.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.011 3.989
3 H 0.126 0.874
4 C 0.023 3.977
5 H 0.079 0.921
6 C -0.203 4.203
7 O -0.296 6.296
8 C -0.025 4.025
9 C -0.041 4.041
10 N -0.843 5.843
11 S 2.682 3.318
12 O -0.969 6.969
13 O -0.969 6.969
14 C -0.551 4.551
15 C -0.575 4.575
16 H 0.087 0.913
17 C -0.130 4.130
18 N -0.514 5.514
19 Si 0.730 3.270
20 H -0.199 1.199
21 H -0.206 1.206
22 H -0.191 1.191
23 H 0.083 0.917
24 H 0.085 0.915
25 H 0.083 0.917
26 H 0.092 0.908
27 H 0.081 0.919
28 H 0.089 0.911
29 H 0.119 0.881
30 H 0.071 0.929
31 H 0.120 0.880
32 H 0.090 0.910
33 H 0.102 0.898
34 H 0.102 0.898
35 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 0.511 -5.650 -12.190 13.445
hybrid contribution -0.284 0.555 1.201 1.353
sum 0.227 -5.095 -10.989 12.115
Atomic orbital electron populations
1.22164 0.94648 1.02894 1.02454 1.21588 0.95217 0.97198 0.84936
0.87412 1.22386 0.98672 0.81951 0.94675 0.92107 1.21840 1.01946
1.00634 0.95902 1.87880 1.72252 1.21798 1.47682 1.22798 0.97231
0.96555 0.85897 1.21919 1.02204 0.80486 0.99524 1.58225 1.76976
1.15452 1.33650 1.06059 0.77910 0.73394 0.74425 1.93454 1.77505
1.51410 1.74497 1.93454 1.65544 1.60674 1.77210 1.27744 1.11465
1.06913 1.08994 1.20333 0.94205 1.37456 1.05538 0.91342 1.24927
0.94717 0.95171 0.98142 1.69957 1.03088 1.44160 1.34203 0.86373
0.79536 0.80201 0.80871 1.19865 1.20578 1.19083 0.91730 0.91471
0.91727 0.90769 0.91913 0.91124 0.88078 0.92887 0.87998 0.90969
0.89801 0.89782 0.92197
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.18 8.64 37.16 0.32 -1.86 16
2 C 0.12 1.77 2.88 -67.42 -0.19 1.57 16
3 H 0.11 1.70 6.88 -51.93 -0.36 1.34 16
4 C 0.08 1.10 3.10 -26.58 -0.08 1.01 16
5 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
6 C -0.15 -1.50 9.01 37.16 0.33 -1.17 16
7 O -0.38 -5.15 10.01 -35.23 -0.35 -5.50 16
8 C 0.05 0.68 6.97 37.10 0.26 0.93 16
9 C 0.08 1.23 6.25 -3.75 -0.02 1.20 16
10 N -1.01 -17.18 2.97 -106.26 -0.32 -17.50 16
11 S 2.58 55.43 5.39 -107.50 -0.58 54.85 16
12 O -0.98 -22.97 16.62 -57.54 -0.96 -23.93 16
13 O -0.98 -22.95 16.61 -57.54 -0.96 -23.91 16
14 C -0.42 -10.03 5.93 36.01 0.21 -9.82 16
15 C -0.54 -14.82 9.13 -34.44 -0.31 -15.13 16
16 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16
17 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16
18 N -0.88 -24.73 13.29 55.43 0.74 -23.99 16
19 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16
20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16
21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16
23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
24 H 0.07 0.74 6.42 -51.93 -0.33 0.41 16
25 H 0.06 0.85 7.24 -51.93 -0.38 0.48 16
26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.07 0.69 6.38 -51.93 -0.33 0.36 16
29 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16
30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
31 H 0.10 1.51 6.87 -51.93 -0.36 1.15 16
32 H 0.07 0.95 7.69 -51.93 -0.40 0.55 16
33 H 0.08 2.02 8.14 -51.92 -0.42 1.59 16
34 H 0.08 2.02 8.14 -51.92 -0.42 1.60 16
35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16
LS Contribution 295.76 15.07 4.46 4.46
Total: -1.00 -32.73 295.76 -7.65 -40.37
By element:
Atomic # 1 Polarization: 5.57 SS G_CDS: -5.08 Total: 0.49 kcal
Atomic # 6 Polarization: -21.65 SS G_CDS: 0.42 Total: -21.24 kcal
Atomic # 7 Polarization: -41.91 SS G_CDS: 0.42 Total: -41.49 kcal
Atomic # 8 Polarization: -51.07 SS G_CDS: -2.26 Total: -53.34 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal
Atomic # 16 Polarization: 55.43 SS G_CDS: -0.58 Total: 54.85 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -32.73 -7.65 -40.37 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408460046.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -82.963 kcal
(2) G-P(sol) polarization free energy of solvation -32.727 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.337 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds