Wall clock time and date at job start Mon Mar 30 2020 05:22:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86794 * 120.00278 * 2 1
4 4 H 1.48496 * 109.47309 * 180.02562 * 3 2 1
5 5 H 1.48508 * 109.47023 * 299.99932 * 3 2 1
6 6 H 1.48501 * 109.47334 * 60.00083 * 3 2 1
7 7 C 1.37880 * 119.99673 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00239 * 180.02562 * 7 2 1
9 9 C 1.50708 * 120.00032 * 359.97438 * 7 2 1
10 10 N 1.46495 * 109.46782 * 180.02562 * 9 7 2
11 11 C 1.34778 * 119.99842 * 180.02562 * 10 9 7
12 12 O 1.21285 * 120.00123 * 359.97438 * 11 10 9
13 13 C 1.50698 * 119.99998 * 180.02562 * 11 10 9
14 14 H 1.08995 * 115.55293 * 346.50584 * 13 11 10
15 15 C 1.53011 * 117.49608 * 200.84231 * 13 11 10
16 16 C 1.52998 * 117.50030 * 132.22227 * 13 11 10
17 17 F 1.39896 * 117.50175 * 214.97505 * 16 13 11
18 18 C 1.50705 * 117.50087 * 359.97438 * 16 13 11
19 19 C 1.38229 * 119.99893 * 286.99942 * 18 16 13
20 20 C 1.38235 * 120.00066 * 179.74356 * 19 18 16
21 21 C 1.38238 * 119.99550 * 0.52407 * 20 19 18
22 22 C 1.38227 * 120.00247 * 359.74685 * 21 20 19
23 23 C 1.38235 * 120.00181 * 359.97438 * 22 21 20
24 24 H 0.97005 * 120.00111 * 359.97438 * 1 2 3
25 25 H 1.08999 * 109.46886 * 60.00504 * 9 7 2
26 26 H 1.08999 * 109.46929 * 300.00180 * 9 7 2
27 27 H 0.96999 * 120.00796 * 359.97438 * 10 9 7
28 28 H 1.09001 * 117.49529 * 359.97438 * 15 13 11
29 29 H 1.08996 * 117.49674 * 144.99142 * 15 13 11
30 30 H 1.08004 * 120.00257 * 359.97438 * 19 18 16
31 31 H 1.08002 * 120.00425 * 180.29805 * 20 19 18
32 32 H 1.08002 * 119.99772 * 179.77470 * 21 20 19
33 33 H 1.07998 * 120.00470 * 179.97438 * 22 21 20
34 34 H 1.07993 * 120.00406 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7091 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2126
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0844 -1.1942 -0.0001
9 6 1.2508 -2.4993 -0.0005
10 7 2.2028 -3.6127 -0.0005
11 6 1.7535 -4.8834 -0.0011
12 8 0.5611 -5.1050 -0.0011
13 6 2.7328 -6.0289 -0.0005
14 1 3.7653 -5.7648 -0.2291
15 6 2.2281 -7.3900 -0.4840
16 6 2.4979 -7.1586 1.0042
17 9 3.6249 -7.7739 1.5596
18 6 1.3053 -7.0405 1.9179
19 6 1.3190 -6.1302 2.9580
20 6 0.2230 -6.0181 3.7929
21 6 -0.8825 -6.8241 3.5942
22 6 -0.8939 -7.7383 2.5576
23 6 0.1998 -7.8464 1.7191
24 1 -0.4850 0.8401 0.0004
25 1 0.6239 -2.5568 -0.8903
26 1 0.6245 -2.5571 0.8897
27 1 3.1565 -3.4356 -0.0009
28 1 1.1876 -7.4569 -0.8020
29 1 2.9286 -8.0213 -1.0306
30 1 2.1845 -5.5038 3.1162
31 1 0.2317 -5.3035 4.6027
32 1 -1.7373 -6.7391 4.2488
33 1 -1.7573 -8.3683 2.4025
34 1 0.1908 -8.5603 0.9089
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000412288287.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:22:58
Heat of formation + Delta-G solvation = -36.168197 kcal
Electronic energy + Delta-G solvation = -19303.673739 eV
Core-core repulsion = 16116.564341 eV
Total energy + Delta-G solvation = -3187.109398 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.106 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-47.70200 -39.74236 -38.44726 -35.74936 -34.11199 -32.33085 -30.77810 -30.63476
-27.59566 -24.40136 -23.70563 -22.49998 -21.73890 -20.62904 -19.47768 -17.82311
-16.66394 -16.34344 -15.79611 -15.26805 -15.19856 -14.90927 -14.34592 -14.23049
-14.15627 -13.86595 -13.27704 -13.01775 -12.75246 -12.50277 -12.13880 -11.93089
-11.78489 -11.32251 -11.04634 -10.96486 -10.92976 -10.44517 -10.33186 -10.01949
-9.40137 -9.14388 -8.77637 -8.72459 -8.65402 -7.89251 -6.18588 -4.25428
1.42797 1.59288 2.81386 3.22244 3.29450 3.32479 3.63219 3.86845
3.91895 4.15678 4.32503 4.60645 4.71416 4.99341 5.11073 5.15022
5.17829 5.24425 5.38691 5.59198 5.64129 5.72560 5.83324 5.96303
6.10559 6.16716 6.57777 6.64483 6.67009 7.12230 7.28223 7.40545
7.49611 7.64572 7.94801 8.59703 8.75724 9.06407 9.41302 10.91616
Molecular weight = 263.11amu
Principal moments of inertia in cm(-1)
A = 0.022906 B = 0.005208 C = 0.004687
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1222.120247 B = 5375.205302 C = 5972.726957
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.064 3.936
3 Si 0.903 3.097
4 H -0.272 1.272
5 H -0.282 1.282
6 H -0.282 1.282
7 C -0.543 4.543
8 H 0.063 0.937
9 C 0.252 3.748
10 N -0.706 5.706
11 C 0.527 3.473
12 O -0.539 6.539
13 C -0.186 4.186
14 H 0.128 0.872
15 C -0.146 4.146
16 C 0.106 3.894
17 F -0.170 7.170
18 C -0.066 4.066
19 C -0.087 4.087
20 C -0.117 4.117
21 C -0.110 4.110
22 C -0.123 4.123
23 C -0.084 4.084
24 H 0.265 0.735
25 H 0.027 0.973
26 H 0.027 0.973
27 H 0.391 0.609
28 H 0.123 0.877
29 H 0.114 0.886
30 H 0.120 0.880
31 H 0.123 0.877
32 H 0.121 0.879
33 H 0.122 0.878
34 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.457 -14.955 3.762 15.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.140 4.140
3 Si 0.731 3.269
4 H -0.196 1.196
5 H -0.208 1.208
6 H -0.208 1.208
7 C -0.581 4.581
8 H 0.082 0.918
9 C 0.131 3.869
10 N -0.354 5.354
11 C 0.311 3.689
12 O -0.418 6.418
13 C -0.208 4.208
14 H 0.146 0.854
15 C -0.183 4.183
16 C 0.087 3.913
17 F -0.150 7.150
18 C -0.067 4.067
19 C -0.105 4.105
20 C -0.135 4.135
21 C -0.128 4.128
22 C -0.141 4.141
23 C -0.102 4.102
24 H 0.075 0.925
25 H 0.045 0.955
26 H 0.045 0.955
27 H 0.223 0.777
28 H 0.141 0.859
29 H 0.132 0.868
30 H 0.138 0.862
31 H 0.141 0.859
32 H 0.139 0.861
33 H 0.140 0.860
34 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 2.455 -14.954 3.779 15.619
hybrid contribution 1.158 1.169 -0.055 1.646
sum 3.613 -13.785 3.724 14.730
Atomic orbital electron populations
1.69986 1.06108 1.27198 1.48970 1.24949 0.94908 0.99457 0.94682
0.86364 0.79851 0.82953 0.77770 1.19623 1.20780 1.20778 1.21264
0.93311 0.90428 1.53128 0.91846 1.19110 0.88213 0.81807 0.97748
1.46386 1.11186 1.05818 1.71991 1.19164 0.88236 0.83462 0.78026
1.90682 1.16068 1.84577 1.50461 1.23207 1.01997 0.91269 1.04302
0.85368 1.23702 1.04815 0.96196 0.93625 1.19273 0.83704 0.99186
0.89120 1.92867 1.52077 1.83258 1.86820 1.18782 0.93434 0.98434
0.96017 1.20913 0.98718 0.96759 0.94125 1.21077 0.93497 0.99181
0.99756 1.21158 0.97992 0.95804 0.97891 1.21028 0.98020 0.99332
0.95695 1.20819 0.92697 0.98088 0.98623 0.92499 0.95518 0.95482
0.77677 0.85888 0.86804 0.86210 0.85857 0.86107 0.85989 0.86050
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16
2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16
4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
7 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16
8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16
9 C 0.25 6.63 5.43 -5.19 -0.03 6.60 16
10 N -0.71 -14.86 5.55 -61.47 -0.34 -15.20 16
11 C 0.53 10.45 6.79 -10.99 -0.07 10.37 16
12 O -0.54 -12.48 15.20 5.55 0.08 -12.40 16
13 C -0.19 -2.80 6.17 -91.77 -0.57 -3.36 16
14 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16
15 C -0.15 -1.87 9.24 -26.72 -0.25 -2.12 16
16 C 0.11 1.56 3.35 -91.77 -0.31 1.25 16
17 F -0.17 -2.50 17.53 2.25 0.04 -2.46 16
18 C -0.07 -1.04 3.66 -104.62 -0.38 -1.42 16
19 C -0.09 -1.40 9.35 -39.59 -0.37 -1.77 16
20 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16
21 C -0.11 -1.49 10.05 -39.59 -0.40 -1.89 16
22 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16
23 C -0.08 -1.20 9.22 -39.58 -0.37 -1.57 16
24 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16
25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
27 H 0.39 7.12 8.32 -40.82 -0.34 6.78 16
28 H 0.12 1.66 7.26 -51.93 -0.38 1.28 16
29 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16
30 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16
31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16
32 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16
33 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16
34 H 0.12 1.46 7.48 -52.49 -0.39 1.07 16
LS Contribution 304.27 15.07 4.59 4.59
Total: -1.00 -31.95 304.27 -7.89 -39.85
By element:
Atomic # 1 Polarization: 10.53 SS G_CDS: -4.03 Total: 6.50 kcal
Atomic # 6 Polarization: -7.44 SS G_CDS: -3.95 Total: -11.39 kcal
Atomic # 7 Polarization: -40.84 SS G_CDS: 0.40 Total: -40.45 kcal
Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal
Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -31.95 -7.89 -39.85 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000412288287.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.678 kcal
(2) G-P(sol) polarization free energy of solvation -31.953 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.275 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.168 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds