Wall clock time and date at job start Mon Mar 30 2020 05:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00243 * 2 1 4 4 H 1.48495 * 109.47258 * 240.00630 * 3 2 1 5 5 H 1.48496 * 109.46833 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47008 * 120.00582 * 3 2 1 7 7 C 1.37880 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99839 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47453 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00594 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99872 * 354.81258 * 11 10 9 13 13 C 1.50706 * 120.00269 * 174.80800 * 11 10 9 14 14 C 1.50692 * 115.55014 * 279.28229 * 13 11 10 15 15 C 1.38255 * 119.97369 * 149.60187 * 14 13 11 16 16 C 1.38190 * 120.02781 * 179.76593 * 15 14 13 17 17 C 1.38468 * 119.97138 * 0.51461 * 16 15 14 18 18 F 1.35102 * 120.02200 * 179.76356 * 17 16 15 19 19 C 1.38451 * 119.95048 * 359.73936 * 17 16 15 20 20 C 1.38197 * 119.97417 * 0.02562 * 19 17 16 21 21 C 1.53006 * 117.49485 * 133.57584 * 13 11 10 22 22 C 1.52997 * 59.99942 * 252.51296 * 21 13 11 23 23 H 0.97003 * 119.99838 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47284 * 59.99741 * 9 7 2 25 25 H 1.09004 * 109.46555 * 299.99987 * 9 7 2 26 26 H 0.97006 * 119.99692 * 359.72528 * 10 9 7 27 27 H 1.07998 * 119.98296 * 0.02562 * 15 14 13 28 28 H 1.08001 * 120.01324 * 180.25162 * 16 15 14 29 29 H 1.07995 * 120.01263 * 179.97438 * 19 17 16 30 30 H 1.08000 * 119.98629 * 180.02562 * 20 19 17 31 31 H 1.08999 * 117.50019 * 0.02562 * 21 13 11 32 32 H 1.08999 * 117.49613 * 145.02262 * 21 13 11 33 33 H 1.09000 * 117.50059 * 252.51461 * 22 21 13 34 34 H 1.09001 * 117.50068 * 107.49013 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5653 -5.1064 0.0954 13 6 2.7279 -6.0271 -0.1181 14 6 3.1994 -6.3376 -1.5153 15 6 4.4629 -6.8610 -1.7176 16 6 4.8946 -7.1507 -2.9979 17 6 4.0651 -6.9066 -4.0794 18 9 4.4879 -7.1850 -5.3320 19 6 2.8019 -6.3776 -3.8761 20 6 2.3705 -6.0932 -2.5944 21 6 2.5594 -7.2012 0.8485 22 6 3.7253 -6.2263 1.0248 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 3.1566 -3.4355 -0.0046 27 1 5.1112 -7.0475 -0.8742 28 1 5.8802 -7.5634 -3.1553 29 1 2.1543 -6.1864 -4.7189 30 1 1.3851 -5.6809 -2.4355 31 1 1.7438 -7.1465 1.5695 32 1 2.7896 -8.1985 0.4738 33 1 4.7226 -6.5822 0.7661 34 1 3.6770 -5.5300 1.8621 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427608293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:56 Heat of formation + Delta-G solvation = -39.199132 kcal Electronic energy + Delta-G solvation = -18978.778457 eV Core-core repulsion = 15791.537627 eV Total energy + Delta-G solvation = -3187.240830 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.93836 -40.24969 -38.36149 -36.18097 -34.21674 -32.30811 -31.23114 -30.21189 -27.53493 -24.67960 -23.18795 -22.86370 -22.14268 -21.23918 -19.27897 -17.95307 -17.35564 -16.24921 -16.09317 -15.63928 -15.34652 -15.22817 -14.87466 -14.44422 -13.96954 -13.56097 -13.45477 -13.25111 -12.86484 -12.59477 -12.15949 -11.92796 -11.77934 -11.52655 -11.10410 -11.05128 -10.89895 -10.62364 -10.57851 -10.27942 -9.44160 -9.17651 -9.12453 -8.75857 -8.47830 -7.93491 -6.18847 -4.25926 1.02842 1.16983 3.17349 3.24257 3.29140 3.30485 3.35877 3.75991 4.05584 4.18341 4.33599 4.45565 4.65762 4.79629 4.85565 5.03432 5.16605 5.17485 5.24082 5.40464 5.56809 5.70361 5.84129 5.85621 5.98338 6.04949 6.09703 6.22600 6.46574 6.80887 7.25405 7.37420 7.46721 7.63458 7.93798 8.57720 8.73711 9.02680 9.40671 10.91297 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.005048 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.985205 B = 5545.010373 C = 6282.767707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.702 5.702 11 C 0.537 3.463 12 O -0.549 6.549 13 C -0.120 4.120 14 C -0.042 4.042 15 C -0.090 4.090 16 C -0.152 4.152 17 C 0.090 3.910 18 F -0.143 7.143 19 C -0.147 4.147 20 C -0.074 4.074 21 C -0.136 4.136 22 C -0.163 4.163 23 H 0.267 0.733 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.392 0.608 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 -14.324 -2.931 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.349 5.349 11 C 0.320 3.680 12 O -0.428 6.428 13 C -0.124 4.124 14 C -0.043 4.043 15 C -0.108 4.108 16 C -0.171 4.171 17 C 0.071 3.929 18 F -0.122 7.122 19 C -0.165 4.165 20 C -0.092 4.092 21 C -0.173 4.173 22 C -0.199 4.199 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.225 0.775 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.292 -14.309 -2.928 17.311 hybrid contribution 0.924 1.063 -0.343 1.449 sum 10.215 -13.246 -3.271 17.044 Atomic orbital electron populations 1.69959 1.06112 1.27458 1.48765 1.24938 0.94905 0.99426 0.94632 0.86475 0.79435 0.82297 0.78726 1.20049 1.21040 1.20041 1.21173 0.93246 0.90383 1.53414 0.91924 1.19143 0.88269 0.81907 0.97776 1.46434 1.11331 1.05756 1.71399 1.19176 0.87887 0.83351 0.77596 1.90674 1.16606 1.84723 1.50773 1.20230 1.02564 0.99596 0.89993 1.18819 0.93907 0.99228 0.92304 1.20861 0.95210 0.98257 0.96501 1.21040 1.00435 1.03834 0.91788 1.17728 0.94234 1.01586 0.79322 1.91485 1.90270 1.91624 1.38794 1.21141 0.95161 1.01627 0.98596 1.21008 1.00226 0.97042 0.90906 1.23025 1.00415 0.93731 1.00134 1.23214 0.94865 1.03090 0.98773 0.92361 0.95546 0.95373 0.77491 0.84709 0.84748 0.84557 0.84551 0.87601 0.87978 0.87712 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.62 9.28 -34.44 -0.32 -14.94 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 10 N -0.70 -14.67 5.55 -61.47 -0.34 -15.01 16 11 C 0.54 10.58 5.81 -10.99 -0.06 10.51 16 12 O -0.55 -13.01 17.01 5.55 0.09 -12.91 16 13 C -0.12 -1.75 2.33 -156.81 -0.37 -2.12 16 14 C -0.04 -0.57 5.48 -104.62 -0.57 -1.14 16 15 C -0.09 -0.99 9.36 -39.59 -0.37 -1.36 16 16 C -0.15 -1.66 10.03 -39.51 -0.40 -2.05 16 17 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16 18 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 19 C -0.15 -1.91 10.03 -39.52 -0.40 -2.31 16 20 C -0.07 -1.08 9.32 -39.59 -0.37 -1.45 16 21 C -0.14 -1.64 9.84 -26.73 -0.26 -1.90 16 22 C -0.16 -1.81 9.57 -26.73 -0.26 -2.06 16 23 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.39 7.23 8.33 -40.82 -0.34 6.89 16 27 H 0.14 1.12 5.94 -52.49 -0.31 0.81 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.14 2.23 7.34 -52.49 -0.39 1.84 16 31 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 0.88 6.10 -51.93 -0.32 0.56 16 34 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -31.26 303.64 -7.55 -38.81 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -3.85 Total: 5.53 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -3.79 Total: -9.79 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.40 Total: -40.15 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.26 -7.55 -38.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.387 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds