Wall clock time and date at job start Mon Mar 30 2020 05:22:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86801 * 120.00243 * 2 1
4 4 H 1.48495 * 109.47258 * 240.00630 * 3 2 1
5 5 H 1.48496 * 109.46833 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.47008 * 120.00582 * 3 2 1
7 7 C 1.37880 * 120.00072 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00002 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99839 * 359.97438 * 7 2 1
10 10 N 1.46496 * 109.47453 * 180.02562 * 9 7 2
11 11 C 1.34769 * 120.00594 * 179.97438 * 10 9 7
12 12 O 1.21285 * 119.99872 * 354.81258 * 11 10 9
13 13 C 1.50706 * 120.00269 * 174.80800 * 11 10 9
14 14 C 1.50692 * 115.55014 * 279.28229 * 13 11 10
15 15 C 1.38255 * 119.97369 * 149.60187 * 14 13 11
16 16 C 1.38190 * 120.02781 * 179.76593 * 15 14 13
17 17 C 1.38468 * 119.97138 * 0.51461 * 16 15 14
18 18 F 1.35102 * 120.02200 * 179.76356 * 17 16 15
19 19 C 1.38451 * 119.95048 * 359.73936 * 17 16 15
20 20 C 1.38197 * 119.97417 * 0.02562 * 19 17 16
21 21 C 1.53006 * 117.49485 * 133.57584 * 13 11 10
22 22 C 1.52997 * 59.99942 * 252.51296 * 21 13 11
23 23 H 0.97003 * 119.99838 * 359.97438 * 1 2 3
24 24 H 1.09003 * 109.47284 * 59.99741 * 9 7 2
25 25 H 1.09004 * 109.46555 * 299.99987 * 9 7 2
26 26 H 0.97006 * 119.99692 * 359.72528 * 10 9 7
27 27 H 1.07998 * 119.98296 * 0.02562 * 15 14 13
28 28 H 1.08001 * 120.01324 * 180.25162 * 16 15 14
29 29 H 1.07995 * 120.01263 * 179.97438 * 19 17 16
30 30 H 1.08000 * 119.98629 * 180.02562 * 20 19 17
31 31 H 1.08999 * 117.50019 * 0.02562 * 21 13 11
32 32 H 1.08999 * 117.49613 * 145.02262 * 21 13 11
33 33 H 1.09000 * 117.50059 * 252.51461 * 22 21 13
34 34 H 1.09001 * 117.50068 * 107.49013 * 22 21 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1028 1.6964 -1.2125
5 1 1.2842 2.7464 0.0006
6 1 3.1030 1.6962 1.2124
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 7 2.2029 -3.6127 -0.0005
11 6 1.7537 -4.8834 0.0000
12 8 0.5653 -5.1064 0.0954
13 6 2.7279 -6.0271 -0.1181
14 6 3.1994 -6.3376 -1.5153
15 6 4.4629 -6.8610 -1.7176
16 6 4.8946 -7.1507 -2.9979
17 6 4.0651 -6.9066 -4.0794
18 9 4.4879 -7.1850 -5.3320
19 6 2.8019 -6.3776 -3.8761
20 6 2.3705 -6.0932 -2.5944
21 6 2.5594 -7.2012 0.8485
22 6 3.7253 -6.2263 1.0248
23 1 -0.4850 0.8401 0.0004
24 1 0.6239 -2.5567 -0.8903
25 1 0.6247 -2.5570 0.8897
26 1 3.1566 -3.4355 -0.0046
27 1 5.1112 -7.0475 -0.8742
28 1 5.8802 -7.5634 -3.1553
29 1 2.1543 -6.1864 -4.7189
30 1 1.3851 -5.6809 -2.4355
31 1 1.7438 -7.1465 1.5695
32 1 2.7896 -8.1985 0.4738
33 1 4.7226 -6.5822 0.7661
34 1 3.6770 -5.5300 1.8621
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000427608293.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:22:56
Heat of formation + Delta-G solvation = -39.199132 kcal
Electronic energy + Delta-G solvation = -18978.778457 eV
Core-core repulsion = 15791.537627 eV
Total energy + Delta-G solvation = -3187.240830 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.106 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-48.93836 -40.24969 -38.36149 -36.18097 -34.21674 -32.30811 -31.23114 -30.21189
-27.53493 -24.67960 -23.18795 -22.86370 -22.14268 -21.23918 -19.27897 -17.95307
-17.35564 -16.24921 -16.09317 -15.63928 -15.34652 -15.22817 -14.87466 -14.44422
-13.96954 -13.56097 -13.45477 -13.25111 -12.86484 -12.59477 -12.15949 -11.92796
-11.77934 -11.52655 -11.10410 -11.05128 -10.89895 -10.62364 -10.57851 -10.27942
-9.44160 -9.17651 -9.12453 -8.75857 -8.47830 -7.93491 -6.18847 -4.25926
1.02842 1.16983 3.17349 3.24257 3.29140 3.30485 3.35877 3.75991
4.05584 4.18341 4.33599 4.45565 4.65762 4.79629 4.85565 5.03432
5.16605 5.17485 5.24082 5.40464 5.56809 5.70361 5.84129 5.85621
5.98338 6.04949 6.09703 6.22600 6.46574 6.80887 7.25405 7.37420
7.46721 7.63458 7.93798 8.57720 8.73711 9.02680 9.40671 10.91297
Molecular weight = 263.11amu
Principal moments of inertia in cm(-1)
A = 0.018992 B = 0.005048 C = 0.004456
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1473.985205 B = 5545.010373 C = 6282.767707
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.065 3.935
3 Si 0.904 3.096
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.275 1.275
7 C -0.544 4.544
8 H 0.063 0.937
9 C 0.250 3.750
10 N -0.702 5.702
11 C 0.537 3.463
12 O -0.549 6.549
13 C -0.120 4.120
14 C -0.042 4.042
15 C -0.090 4.090
16 C -0.152 4.152
17 C 0.090 3.910
18 F -0.143 7.143
19 C -0.147 4.147
20 C -0.074 4.074
21 C -0.136 4.136
22 C -0.163 4.163
23 H 0.267 0.733
24 H 0.027 0.973
25 H 0.028 0.972
26 H 0.392 0.608
27 H 0.135 0.865
28 H 0.135 0.865
29 H 0.137 0.863
30 H 0.137 0.863
31 H 0.106 0.894
32 H 0.102 0.898
33 H 0.105 0.895
34 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.324 -14.324 -2.931 17.898
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.139 4.139
3 Si 0.731 3.269
4 H -0.200 1.200
5 H -0.210 1.210
6 H -0.200 1.200
7 C -0.582 4.582
8 H 0.081 0.919
9 C 0.129 3.871
10 N -0.349 5.349
11 C 0.320 3.680
12 O -0.428 6.428
13 C -0.124 4.124
14 C -0.043 4.043
15 C -0.108 4.108
16 C -0.171 4.171
17 C 0.071 3.929
18 F -0.122 7.122
19 C -0.165 4.165
20 C -0.092 4.092
21 C -0.173 4.173
22 C -0.199 4.199
23 H 0.076 0.924
24 H 0.045 0.955
25 H 0.046 0.954
26 H 0.225 0.775
27 H 0.153 0.847
28 H 0.153 0.847
29 H 0.154 0.846
30 H 0.154 0.846
31 H 0.124 0.876
32 H 0.120 0.880
33 H 0.123 0.877
34 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 9.292 -14.309 -2.928 17.311
hybrid contribution 0.924 1.063 -0.343 1.449
sum 10.215 -13.246 -3.271 17.044
Atomic orbital electron populations
1.69959 1.06112 1.27458 1.48765 1.24938 0.94905 0.99426 0.94632
0.86475 0.79435 0.82297 0.78726 1.20049 1.21040 1.20041 1.21173
0.93246 0.90383 1.53414 0.91924 1.19143 0.88269 0.81907 0.97776
1.46434 1.11331 1.05756 1.71399 1.19176 0.87887 0.83351 0.77596
1.90674 1.16606 1.84723 1.50773 1.20230 1.02564 0.99596 0.89993
1.18819 0.93907 0.99228 0.92304 1.20861 0.95210 0.98257 0.96501
1.21040 1.00435 1.03834 0.91788 1.17728 0.94234 1.01586 0.79322
1.91485 1.90270 1.91624 1.38794 1.21141 0.95161 1.01627 0.98596
1.21008 1.00226 0.97042 0.90906 1.23025 1.00415 0.93731 1.00134
1.23214 0.94865 1.03090 0.98773 0.92361 0.95546 0.95373 0.77491
0.84709 0.84748 0.84557 0.84551 0.87601 0.87978 0.87712 0.87612
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16
2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16
3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16
4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16
6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
7 C -0.54 -14.62 9.28 -34.44 -0.32 -14.94 16
8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16
9 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16
10 N -0.70 -14.67 5.55 -61.47 -0.34 -15.01 16
11 C 0.54 10.58 5.81 -10.99 -0.06 10.51 16
12 O -0.55 -13.01 17.01 5.55 0.09 -12.91 16
13 C -0.12 -1.75 2.33 -156.81 -0.37 -2.12 16
14 C -0.04 -0.57 5.48 -104.62 -0.57 -1.14 16
15 C -0.09 -0.99 9.36 -39.59 -0.37 -1.36 16
16 C -0.15 -1.66 10.03 -39.51 -0.40 -2.05 16
17 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16
18 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16
19 C -0.15 -1.91 10.03 -39.52 -0.40 -2.31 16
20 C -0.07 -1.08 9.32 -39.59 -0.37 -1.45 16
21 C -0.14 -1.64 9.84 -26.73 -0.26 -1.90 16
22 C -0.16 -1.81 9.57 -26.73 -0.26 -2.06 16
23 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
25 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16
26 H 0.39 7.23 8.33 -40.82 -0.34 6.89 16
27 H 0.14 1.12 5.94 -52.49 -0.31 0.81 16
28 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16
29 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16
30 H 0.14 2.23 7.34 -52.49 -0.39 1.84 16
31 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16
32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16
33 H 0.10 0.88 6.10 -51.93 -0.32 0.56 16
34 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16
LS Contribution 303.64 15.07 4.58 4.58
Total: -1.00 -31.26 303.64 -7.55 -38.81
By element:
Atomic # 1 Polarization: 9.38 SS G_CDS: -3.85 Total: 5.53 kcal
Atomic # 6 Polarization: -6.01 SS G_CDS: -3.79 Total: -9.79 kcal
Atomic # 7 Polarization: -40.54 SS G_CDS: 0.40 Total: -40.15 kcal
Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.91 kcal
Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal
Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal
Total LS contribution 4.58 Total: 4.58 kcal
Total: -31.26 -7.55 -38.81 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427608293.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.387 kcal
(2) G-P(sol) polarization free energy of solvation -31.263 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.650 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.199 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds