Wall clock time and date at job start Mon Mar 30 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00243 * 2 1 4 4 H 1.48495 * 109.47258 * 240.00630 * 3 2 1 5 5 H 1.48496 * 109.46833 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47008 * 120.00582 * 3 2 1 7 7 C 1.37880 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99839 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47453 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00594 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99872 * 354.81258 * 11 10 9 13 13 C 1.50706 * 120.00269 * 174.80800 * 11 10 9 14 14 C 1.50692 * 115.55014 * 279.28229 * 13 11 10 15 15 C 1.38255 * 119.97369 * 149.60187 * 14 13 11 16 16 C 1.38190 * 120.02781 * 179.76593 * 15 14 13 17 17 C 1.38468 * 119.97138 * 0.51461 * 16 15 14 18 18 F 1.35102 * 120.02200 * 179.76356 * 17 16 15 19 19 C 1.38451 * 119.95048 * 359.73936 * 17 16 15 20 20 C 1.38197 * 119.97417 * 0.02562 * 19 17 16 21 21 C 1.53006 * 117.49485 * 133.57584 * 13 11 10 22 22 C 1.52997 * 59.99942 * 252.51296 * 21 13 11 23 23 H 0.97003 * 119.99838 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47284 * 59.99741 * 9 7 2 25 25 H 1.09004 * 109.46555 * 299.99987 * 9 7 2 26 26 H 0.97006 * 119.99692 * 359.72528 * 10 9 7 27 27 H 1.07998 * 119.98296 * 0.02562 * 15 14 13 28 28 H 1.08001 * 120.01324 * 180.25162 * 16 15 14 29 29 H 1.07995 * 120.01263 * 179.97438 * 19 17 16 30 30 H 1.08000 * 119.98629 * 180.02562 * 20 19 17 31 31 H 1.08999 * 117.50019 * 0.02562 * 21 13 11 32 32 H 1.08999 * 117.49613 * 145.02262 * 21 13 11 33 33 H 1.09000 * 117.50059 * 252.51461 * 22 21 13 34 34 H 1.09001 * 117.50068 * 107.49013 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5653 -5.1064 0.0954 13 6 2.7279 -6.0271 -0.1181 14 6 3.1994 -6.3376 -1.5153 15 6 4.4629 -6.8610 -1.7176 16 6 4.8946 -7.1507 -2.9979 17 6 4.0651 -6.9066 -4.0794 18 9 4.4879 -7.1850 -5.3320 19 6 2.8019 -6.3776 -3.8761 20 6 2.3705 -6.0932 -2.5944 21 6 2.5594 -7.2012 0.8485 22 6 3.7253 -6.2263 1.0248 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 3.1566 -3.4355 -0.0046 27 1 5.1112 -7.0475 -0.8742 28 1 5.8802 -7.5634 -3.1553 29 1 2.1543 -6.1864 -4.7189 30 1 1.3851 -5.6809 -2.4355 31 1 1.7438 -7.1465 1.5695 32 1 2.7896 -8.1985 0.4738 33 1 4.7226 -6.5822 0.7661 34 1 3.6770 -5.5300 1.8621 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427608293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:55 Heat of formation + Delta-G solvation = -59.112311 kcal Electronic energy + Delta-G solvation = -18979.641957 eV Core-core repulsion = 15791.537627 eV Total energy + Delta-G solvation = -3188.104330 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.90707 -41.49409 -39.69339 -37.35285 -36.16983 -34.33295 -32.18201 -31.17970 -29.54696 -26.12018 -24.49731 -24.10502 -23.13357 -22.67752 -20.83979 -19.12198 -18.67358 -17.85231 -17.21467 -17.07864 -16.69778 -16.60360 -16.17806 -15.89312 -15.47517 -14.95160 -14.61349 -14.22456 -14.16270 -13.99249 -13.82112 -13.59186 -13.19246 -12.99502 -12.69885 -12.41270 -12.26574 -12.03105 -11.64374 -11.63851 -11.48049 -10.81430 -10.73372 -10.11815 -9.88592 -9.47299 -8.30848 -6.47784 0.05262 0.22419 1.42069 1.46082 1.54332 1.61547 2.26173 2.39106 2.47855 2.93862 3.04054 3.23228 3.42569 3.70168 3.78411 3.90129 3.98820 4.01513 4.24839 4.43772 4.64836 4.70507 4.87831 4.97473 5.01719 5.07084 5.12448 5.19177 5.20645 5.25068 5.44492 5.48812 5.64622 5.81735 5.86772 6.62013 6.84669 7.20665 7.40931 8.81147 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.005048 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.985205 B = 5545.010373 C = 6282.767707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.267 3.733 10 N -0.698 5.698 11 C 0.535 3.465 12 O -0.599 6.599 13 C -0.142 4.142 14 C -0.047 4.047 15 C -0.076 4.076 16 C -0.138 4.138 17 C 0.080 3.920 18 F -0.146 7.146 19 C -0.155 4.155 20 C -0.102 4.102 21 C -0.131 4.131 22 C -0.131 4.131 23 H 0.269 0.731 24 H -0.014 1.014 25 H -0.011 1.011 26 H 0.407 0.593 27 H 0.175 0.825 28 H 0.170 0.830 29 H 0.139 0.861 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.522 -15.122 -2.538 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.144 3.856 10 N -0.346 5.346 11 C 0.322 3.678 12 O -0.481 6.481 13 C -0.145 4.145 14 C -0.048 4.048 15 C -0.093 4.093 16 C -0.156 4.156 17 C 0.061 3.939 18 F -0.124 7.124 19 C -0.173 4.173 20 C -0.121 4.121 21 C -0.169 4.169 22 C -0.168 4.168 23 H 0.078 0.922 24 H 0.004 0.996 25 H 0.007 0.993 26 H 0.243 0.757 27 H 0.193 0.807 28 H 0.187 0.813 29 H 0.157 0.843 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.150 0.850 33 H 0.166 0.834 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.533 -15.138 -2.534 20.463 hybrid contribution -0.451 1.241 -0.479 1.404 sum 13.082 -13.897 -3.013 19.322 Atomic orbital electron populations 1.70128 1.08283 1.28669 1.49831 1.26051 0.95752 1.03860 0.93748 0.85218 0.77950 0.76610 0.79533 1.18784 1.21026 1.18476 1.21556 0.94244 0.90495 1.53133 0.89899 1.18564 0.88639 0.84301 0.94056 1.46166 1.11185 1.05309 1.71933 1.20141 0.88312 0.84074 0.75285 1.90635 1.19442 1.85506 1.52489 1.20000 1.03793 0.98556 0.92144 1.18826 0.95016 1.00036 0.90922 1.21174 0.93860 0.96467 0.97827 1.21435 1.01273 1.02030 0.90876 1.17886 0.94193 1.01909 0.79892 1.91481 1.90174 1.91659 1.39112 1.21163 0.96082 1.01982 0.98097 1.20839 0.99511 0.99248 0.92482 1.23175 1.00645 0.94563 0.98485 1.23447 0.96000 1.01402 0.95946 0.92208 0.99610 0.99318 0.75711 0.80745 0.81293 0.84329 0.88118 0.89371 0.85043 0.83398 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 2 C 0.01 0.31 5.46 84.66 0.46 0.78 16 3 Si 0.98 42.33 29.54 68.60 2.03 44.35 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.56 -30.45 9.28 25.60 0.24 -30.21 16 8 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.84 5.43 85.63 0.47 15.31 16 10 N -0.70 -30.21 5.55 -466.78 -2.59 -32.80 16 11 C 0.54 22.01 5.81 87.66 0.51 22.52 16 12 O -0.60 -30.53 17.01 -3.05 -0.05 -30.58 16 13 C -0.14 -3.95 2.33 -53.67 -0.13 -4.07 16 14 C -0.05 -1.21 5.48 -19.86 -0.11 -1.32 16 15 C -0.08 -1.32 9.36 22.26 0.21 -1.11 16 16 C -0.14 -2.41 10.03 22.31 0.22 -2.18 16 17 C 0.08 1.85 7.30 22.38 0.16 2.01 16 18 F -0.15 -3.45 17.27 44.97 0.78 -2.67 16 19 C -0.15 -4.08 10.03 22.31 0.22 -3.86 16 20 C -0.10 -3.10 9.32 22.26 0.21 -2.89 16 21 C -0.13 -2.88 9.84 30.60 0.30 -2.58 16 22 C -0.13 -2.41 9.57 30.59 0.29 -2.12 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H 0.41 14.92 8.33 -92.70 -0.77 14.15 16 27 H 0.18 1.63 5.94 -2.91 -0.02 1.61 16 28 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.10 3.69 7.34 -2.91 -0.02 3.67 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.15 1.46 6.10 -2.39 -0.01 1.45 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -73.41 303.64 3.87 -69.54 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.36 Total: 17.94 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 3.06 Total: -9.71 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -2.30 Total: -88.87 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.05 Total: -30.58 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -73.41 3.87 -69.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.428 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds