Wall clock time and date at job start Mon Mar 30 2020 05:22:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86801 * 120.00243 * 2 1
4 4 H 1.48495 * 109.47258 * 240.00630 * 3 2 1
5 5 H 1.48496 * 109.46833 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.47008 * 120.00582 * 3 2 1
7 7 C 1.37880 * 120.00072 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00002 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99839 * 359.97438 * 7 2 1
10 10 N 1.46496 * 109.47453 * 180.02562 * 9 7 2
11 11 C 1.34769 * 120.00594 * 179.97438 * 10 9 7
12 12 O 1.21285 * 119.99872 * 354.81258 * 11 10 9
13 13 C 1.50706 * 120.00269 * 174.80800 * 11 10 9
14 14 C 1.50692 * 115.55014 * 279.28229 * 13 11 10
15 15 C 1.38255 * 119.97369 * 149.60187 * 14 13 11
16 16 C 1.38190 * 120.02781 * 179.76593 * 15 14 13
17 17 C 1.38468 * 119.97138 * 0.51461 * 16 15 14
18 18 F 1.35102 * 120.02200 * 179.76356 * 17 16 15
19 19 C 1.38451 * 119.95048 * 359.73936 * 17 16 15
20 20 C 1.38197 * 119.97417 * 0.02562 * 19 17 16
21 21 C 1.53006 * 117.49485 * 133.57584 * 13 11 10
22 22 C 1.52997 * 59.99942 * 252.51296 * 21 13 11
23 23 H 0.97003 * 119.99838 * 359.97438 * 1 2 3
24 24 H 1.09003 * 109.47284 * 59.99741 * 9 7 2
25 25 H 1.09004 * 109.46555 * 299.99987 * 9 7 2
26 26 H 0.97006 * 119.99692 * 359.72528 * 10 9 7
27 27 H 1.07998 * 119.98296 * 0.02562 * 15 14 13
28 28 H 1.08001 * 120.01324 * 180.25162 * 16 15 14
29 29 H 1.07995 * 120.01263 * 179.97438 * 19 17 16
30 30 H 1.08000 * 119.98629 * 180.02562 * 20 19 17
31 31 H 1.08999 * 117.50019 * 0.02562 * 21 13 11
32 32 H 1.08999 * 117.49613 * 145.02262 * 21 13 11
33 33 H 1.09000 * 117.50059 * 252.51461 * 22 21 13
34 34 H 1.09001 * 117.50068 * 107.49013 * 22 21 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1028 1.6964 -1.2125
5 1 1.2842 2.7464 0.0006
6 1 3.1030 1.6962 1.2124
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 7 2.2029 -3.6127 -0.0005
11 6 1.7537 -4.8834 0.0000
12 8 0.5653 -5.1064 0.0954
13 6 2.7279 -6.0271 -0.1181
14 6 3.1994 -6.3376 -1.5153
15 6 4.4629 -6.8610 -1.7176
16 6 4.8946 -7.1507 -2.9979
17 6 4.0651 -6.9066 -4.0794
18 9 4.4879 -7.1850 -5.3320
19 6 2.8019 -6.3776 -3.8761
20 6 2.3705 -6.0932 -2.5944
21 6 2.5594 -7.2012 0.8485
22 6 3.7253 -6.2263 1.0248
23 1 -0.4850 0.8401 0.0004
24 1 0.6239 -2.5567 -0.8903
25 1 0.6247 -2.5570 0.8897
26 1 3.1566 -3.4355 -0.0046
27 1 5.1112 -7.0475 -0.8742
28 1 5.8802 -7.5634 -3.1553
29 1 2.1543 -6.1864 -4.7189
30 1 1.3851 -5.6809 -2.4355
31 1 1.7438 -7.1465 1.5695
32 1 2.7896 -8.1985 0.4738
33 1 4.7226 -6.5822 0.7661
34 1 3.6770 -5.5300 1.8621
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000427608293.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:22:55
Heat of formation + Delta-G solvation = -59.112311 kcal
Electronic energy + Delta-G solvation = -18979.641957 eV
Core-core repulsion = 15791.537627 eV
Total energy + Delta-G solvation = -3188.104330 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.106 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-49.90707 -41.49409 -39.69339 -37.35285 -36.16983 -34.33295 -32.18201 -31.17970
-29.54696 -26.12018 -24.49731 -24.10502 -23.13357 -22.67752 -20.83979 -19.12198
-18.67358 -17.85231 -17.21467 -17.07864 -16.69778 -16.60360 -16.17806 -15.89312
-15.47517 -14.95160 -14.61349 -14.22456 -14.16270 -13.99249 -13.82112 -13.59186
-13.19246 -12.99502 -12.69885 -12.41270 -12.26574 -12.03105 -11.64374 -11.63851
-11.48049 -10.81430 -10.73372 -10.11815 -9.88592 -9.47299 -8.30848 -6.47784
0.05262 0.22419 1.42069 1.46082 1.54332 1.61547 2.26173 2.39106
2.47855 2.93862 3.04054 3.23228 3.42569 3.70168 3.78411 3.90129
3.98820 4.01513 4.24839 4.43772 4.64836 4.70507 4.87831 4.97473
5.01719 5.07084 5.12448 5.19177 5.20645 5.25068 5.44492 5.48812
5.64622 5.81735 5.86772 6.62013 6.84669 7.20665 7.40931 8.81147
Molecular weight = 263.11amu
Principal moments of inertia in cm(-1)
A = 0.018992 B = 0.005048 C = 0.004456
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1473.985205 B = 5545.010373 C = 6282.767707
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.006 3.994
3 Si 0.984 3.016
4 H -0.263 1.263
5 H -0.285 1.285
6 H -0.260 1.260
7 C -0.557 4.557
8 H 0.083 0.917
9 C 0.267 3.733
10 N -0.698 5.698
11 C 0.535 3.465
12 O -0.599 6.599
13 C -0.142 4.142
14 C -0.047 4.047
15 C -0.076 4.076
16 C -0.138 4.138
17 C 0.080 3.920
18 F -0.146 7.146
19 C -0.155 4.155
20 C -0.102 4.102
21 C -0.131 4.131
22 C -0.131 4.131
23 H 0.269 0.731
24 H -0.014 1.014
25 H -0.011 1.011
26 H 0.407 0.593
27 H 0.175 0.825
28 H 0.170 0.830
29 H 0.139 0.861
30 H 0.101 0.899
31 H 0.088 0.912
32 H 0.131 0.869
33 H 0.148 0.852
34 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.522 -15.122 -2.538 21.119
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.194 4.194
3 Si 0.807 3.193
4 H -0.188 1.188
5 H -0.210 1.210
6 H -0.185 1.185
7 C -0.594 4.594
8 H 0.101 0.899
9 C 0.144 3.856
10 N -0.346 5.346
11 C 0.322 3.678
12 O -0.481 6.481
13 C -0.145 4.145
14 C -0.048 4.048
15 C -0.093 4.093
16 C -0.156 4.156
17 C 0.061 3.939
18 F -0.124 7.124
19 C -0.173 4.173
20 C -0.121 4.121
21 C -0.169 4.169
22 C -0.168 4.168
23 H 0.078 0.922
24 H 0.004 0.996
25 H 0.007 0.993
26 H 0.243 0.757
27 H 0.193 0.807
28 H 0.187 0.813
29 H 0.157 0.843
30 H 0.119 0.881
31 H 0.106 0.894
32 H 0.150 0.850
33 H 0.166 0.834
34 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 13.533 -15.138 -2.534 20.463
hybrid contribution -0.451 1.241 -0.479 1.404
sum 13.082 -13.897 -3.013 19.322
Atomic orbital electron populations
1.70128 1.08283 1.28669 1.49831 1.26051 0.95752 1.03860 0.93748
0.85218 0.77950 0.76610 0.79533 1.18784 1.21026 1.18476 1.21556
0.94244 0.90495 1.53133 0.89899 1.18564 0.88639 0.84301 0.94056
1.46166 1.11185 1.05309 1.71933 1.20141 0.88312 0.84074 0.75285
1.90635 1.19442 1.85506 1.52489 1.20000 1.03793 0.98556 0.92144
1.18826 0.95016 1.00036 0.90922 1.21174 0.93860 0.96467 0.97827
1.21435 1.01273 1.02030 0.90876 1.17886 0.94193 1.01909 0.79892
1.91481 1.90174 1.91659 1.39112 1.21163 0.96082 1.01982 0.98097
1.20839 0.99511 0.99248 0.92482 1.23175 1.00645 0.94563 0.98485
1.23447 0.96000 1.01402 0.95946 0.92208 0.99610 0.99318 0.75711
0.80745 0.81293 0.84329 0.88118 0.89371 0.85043 0.83398 0.87963
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16
2 C 0.01 0.31 5.46 84.66 0.46 0.78 16
3 Si 0.98 42.33 29.54 68.60 2.03 44.35 16
4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16
5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16
6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16
7 C -0.56 -30.45 9.28 25.60 0.24 -30.21 16
8 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16
9 C 0.27 14.84 5.43 85.63 0.47 15.31 16
10 N -0.70 -30.21 5.55 -466.78 -2.59 -32.80 16
11 C 0.54 22.01 5.81 87.66 0.51 22.52 16
12 O -0.60 -30.53 17.01 -3.05 -0.05 -30.58 16
13 C -0.14 -3.95 2.33 -53.67 -0.13 -4.07 16
14 C -0.05 -1.21 5.48 -19.86 -0.11 -1.32 16
15 C -0.08 -1.32 9.36 22.26 0.21 -1.11 16
16 C -0.14 -2.41 10.03 22.31 0.22 -2.18 16
17 C 0.08 1.85 7.30 22.38 0.16 2.01 16
18 F -0.15 -3.45 17.27 44.97 0.78 -2.67 16
19 C -0.15 -4.08 10.03 22.31 0.22 -3.86 16
20 C -0.10 -3.10 9.32 22.26 0.21 -2.89 16
21 C -0.13 -2.88 9.84 30.60 0.30 -2.58 16
22 C -0.13 -2.41 9.57 30.59 0.29 -2.12 16
23 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16
24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16
25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16
26 H 0.41 14.92 8.33 -92.70 -0.77 14.15 16
27 H 0.18 1.63 5.94 -2.91 -0.02 1.61 16
28 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16
29 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16
30 H 0.10 3.69 7.34 -2.91 -0.02 3.67 16
31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16
32 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16
33 H 0.15 1.46 6.10 -2.39 -0.01 1.45 16
34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
Total: -1.00 -73.41 303.64 3.87 -69.54
By element:
Atomic # 1 Polarization: 17.58 SS G_CDS: 0.36 Total: 17.94 kcal
Atomic # 6 Polarization: -12.77 SS G_CDS: 3.06 Total: -9.71 kcal
Atomic # 7 Polarization: -86.56 SS G_CDS: -2.30 Total: -88.87 kcal
Atomic # 8 Polarization: -30.53 SS G_CDS: -0.05 Total: -30.58 kcal
Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal
Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal
Total: -73.41 3.87 -69.54 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427608293.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.428 kcal
(2) G-P(sol) polarization free energy of solvation -73.408 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.112 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds