Wall clock time and date at job start Mon Mar 30 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.96695 * 165.33628 * 4 3 2 6 6 C 1.53947 * 113.76903 * 33.65678 * 4 3 2 7 7 C 1.53947 * 86.29288 * 222.09410 * 6 4 3 8 8 N 1.47588 * 113.77227 * 297.01643 * 4 3 2 9 9 S 1.65603 * 134.48792 * 318.93038 * 8 4 3 10 10 O 1.42097 * 104.27761 * 206.07036 * 9 8 4 11 11 O 1.42105 * 104.27874 * 333.92967 * 9 8 4 12 12 C 1.81400 * 104.44809 * 89.99676 * 9 8 4 13 13 C 1.53006 * 109.46966 * 179.97438 * 12 9 8 14 14 C 1.50696 * 109.46991 * 180.02562 * 13 12 9 15 15 H 1.08001 * 120.00209 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00195 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00065 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47317 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47058 * 119.99915 * 18 16 14 21 21 H 1.48504 * 109.47391 * 240.00338 * 18 16 14 22 22 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 23 23 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 24 24 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.09002 * 113.73993 * 336.43636 * 6 4 3 28 28 H 1.08995 * 113.74541 * 107.74569 * 6 4 3 29 29 H 1.08994 * 113.77303 * 137.90781 * 7 6 4 30 30 H 1.09003 * 113.76872 * 269.19511 * 7 6 4 31 31 H 1.08994 * 109.47586 * 299.99997 * 12 9 8 32 32 H 1.09000 * 109.46712 * 60.00175 * 12 9 8 33 33 H 1.08994 * 109.47275 * 300.00567 * 13 12 9 34 34 H 1.09001 * 109.46797 * 60.00173 * 13 12 9 35 35 H 0.96998 * 120.00620 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 4.0360 2.1189 -0.2547 6 6 4.0611 -0.0333 -0.7819 7 6 5.0527 -0.2248 0.3800 8 7 4.0806 0.5258 1.2023 9 16 3.7387 0.5988 2.8210 10 8 4.9582 0.2357 3.4535 11 8 3.1755 1.8908 3.0024 12 6 2.4824 -0.6846 3.0765 13 6 2.0795 -0.7173 4.5522 14 6 1.0363 -1.7839 4.7645 15 1 0.6951 -2.3792 3.9305 16 6 0.5174 -1.9997 6.0236 17 7 0.9332 -1.2751 7.0392 18 14 -0.7763 -3.3213 6.2867 19 1 -1.0710 -3.9900 4.9939 20 1 -0.2697 -4.3233 7.2587 21 1 -2.0171 -2.7009 6.8166 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.3349 -0.8406 -0.8766 28 1 4.5377 0.2243 -1.7277 29 1 5.1775 -1.2640 0.6843 30 1 6.0010 0.2936 0.2382 31 1 1.6074 -0.4634 2.4654 32 1 2.8899 -1.6541 2.7899 33 1 2.9546 -0.9387 5.1629 34 1 1.6721 0.2522 4.8391 35 1 0.5679 -1.4266 7.9250 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432275445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:27 Heat of formation + Delta-G solvation = -89.679144 kcal Electronic energy + Delta-G solvation = -18956.032763 eV Core-core repulsion = 15889.674118 eV Total energy + Delta-G solvation = -3066.358645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.50609 -37.16265 -36.45279 -35.33741 -33.82971 -31.08803 -29.56713 -28.29469 -26.16892 -25.51712 -23.27050 -21.74659 -20.53121 -18.39635 -17.47869 -16.46539 -16.34314 -16.29392 -15.74952 -15.25713 -15.03446 -14.51654 -14.10627 -13.90541 -13.21014 -13.09313 -12.50352 -12.47203 -12.18375 -11.86994 -11.67809 -11.51970 -11.46782 -11.41497 -11.06549 -10.90581 -10.67379 -10.53619 -10.33581 -10.31681 -9.71606 -9.64675 -9.24814 -8.73862 -8.48065 -6.09720 -4.14671 0.84156 3.04355 3.26214 3.33336 3.37040 3.69590 4.35282 4.42693 4.44669 4.54978 4.72645 4.90502 5.19029 5.22859 5.25412 5.37746 5.41741 5.45958 5.55426 5.58006 5.72510 5.77116 5.80766 5.89950 6.23835 6.28731 6.60363 6.62927 7.12659 7.35356 7.41156 7.84231 8.22047 8.89268 9.49632 11.01532 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.006605 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.389554 B = 4238.013313 C = 4923.508321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.381 6.381 3 C 0.037 3.963 4 C 0.156 3.844 5 H 0.104 0.896 6 C -0.138 4.138 7 C 0.127 3.873 8 N -1.037 6.037 9 S 2.603 3.397 10 O -0.968 6.968 11 O -0.969 6.969 12 C -0.578 4.578 13 C 0.028 3.972 14 C -0.515 4.515 15 H 0.062 0.938 16 C 0.056 3.944 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.031 0.969 34 H 0.031 0.969 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 3.163 -18.121 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.300 6.300 3 C -0.040 4.040 4 C 0.050 3.950 5 H 0.121 0.879 6 C -0.178 4.178 7 C 0.002 3.998 8 N -0.875 5.875 9 S 2.705 3.295 10 O -0.959 6.959 11 O -0.960 6.960 12 C -0.712 4.712 13 C -0.012 4.012 14 C -0.555 4.555 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.557 3.671 -17.095 17.843 hybrid contribution -1.328 -0.847 0.156 1.583 sum 2.228 2.824 -16.939 17.317 Atomic orbital electron populations 1.22803 0.80735 1.03184 1.00124 1.87888 1.19825 1.26887 1.95413 1.22809 0.93404 0.85799 1.02029 1.22296 0.91997 0.97342 0.83373 0.87852 1.23608 0.98767 0.98736 0.96662 1.22570 0.92333 0.96809 0.88110 1.60531 1.47701 1.57368 1.21857 1.05248 0.76396 0.76806 0.71064 1.93519 1.43580 1.85560 1.73222 1.93503 1.80819 1.37788 1.83893 1.30399 1.15377 1.15546 1.09846 1.18973 0.98279 0.99371 0.84530 1.21045 1.22008 1.18134 0.94287 0.91955 1.25077 0.97011 0.96489 0.96005 1.69967 1.43065 1.39766 1.00210 0.86425 0.81196 0.81446 0.78284 1.19638 1.20801 1.20849 0.93434 0.94278 0.89318 0.91529 0.91421 0.87617 0.90742 0.90191 0.90279 0.85864 0.86371 0.95043 0.95084 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.91 8.30 -35.23 -0.29 -5.20 16 3 C 0.04 0.44 6.19 37.16 0.23 0.67 16 4 C 0.16 1.80 4.78 -66.86 -0.32 1.48 16 5 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 6 C -0.14 -1.29 7.69 -25.79 -0.20 -1.49 16 7 C 0.13 1.44 8.92 -2.85 -0.03 1.41 16 8 N -1.04 -15.42 3.84 -111.09 -0.43 -15.85 16 9 S 2.60 51.69 5.81 -107.50 -0.62 51.07 16 10 O -0.97 -21.99 18.03 -57.54 -1.04 -23.03 16 11 O -0.97 -21.39 17.45 -57.54 -1.00 -22.39 16 12 C -0.58 -12.02 6.12 37.16 0.23 -11.79 16 13 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 14 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 15 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.93 7.56 -51.93 -0.39 0.54 16 27 H 0.11 1.07 6.89 -51.93 -0.36 0.72 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 2.40 7.27 -51.93 -0.38 2.02 16 32 H 0.12 2.27 8.14 -51.92 -0.42 1.85 16 33 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -35.56 309.18 -7.85 -43.41 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.32 Total: -1.82 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 0.48 Total: -21.06 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.31 Total: -42.08 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -2.33 Total: -50.62 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.62 Total: 51.07 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.56 -7.85 -43.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432275445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.264 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds