Wall clock time and date at job start Mon Mar 30 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.96695 * 165.33628 * 4 3 2 6 6 C 1.53947 * 113.76903 * 33.65678 * 4 3 2 7 7 C 1.53947 * 86.29288 * 222.09410 * 6 4 3 8 8 N 1.47588 * 113.77227 * 297.01643 * 4 3 2 9 9 S 1.65603 * 134.48792 * 318.93038 * 8 4 3 10 10 O 1.42097 * 104.27761 * 206.07036 * 9 8 4 11 11 O 1.42105 * 104.27874 * 333.92967 * 9 8 4 12 12 C 1.81400 * 104.44809 * 89.99676 * 9 8 4 13 13 C 1.53006 * 109.46966 * 179.97438 * 12 9 8 14 14 C 1.50696 * 109.46991 * 180.02562 * 13 12 9 15 15 H 1.08001 * 120.00209 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00195 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00065 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47317 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47058 * 119.99915 * 18 16 14 21 21 H 1.48504 * 109.47391 * 240.00338 * 18 16 14 22 22 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 23 23 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 24 24 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.09002 * 113.73993 * 336.43636 * 6 4 3 28 28 H 1.08995 * 113.74541 * 107.74569 * 6 4 3 29 29 H 1.08994 * 113.77303 * 137.90781 * 7 6 4 30 30 H 1.09003 * 113.76872 * 269.19511 * 7 6 4 31 31 H 1.08994 * 109.47586 * 299.99997 * 12 9 8 32 32 H 1.09000 * 109.46712 * 60.00175 * 12 9 8 33 33 H 1.08994 * 109.47275 * 300.00567 * 13 12 9 34 34 H 1.09001 * 109.46797 * 60.00173 * 13 12 9 35 35 H 0.96998 * 120.00620 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 4.0360 2.1189 -0.2547 6 6 4.0611 -0.0333 -0.7819 7 6 5.0527 -0.2248 0.3800 8 7 4.0806 0.5258 1.2023 9 16 3.7387 0.5988 2.8210 10 8 4.9582 0.2357 3.4535 11 8 3.1755 1.8908 3.0024 12 6 2.4824 -0.6846 3.0765 13 6 2.0795 -0.7173 4.5522 14 6 1.0363 -1.7839 4.7645 15 1 0.6951 -2.3792 3.9305 16 6 0.5174 -1.9997 6.0236 17 7 0.9332 -1.2751 7.0392 18 14 -0.7763 -3.3213 6.2867 19 1 -1.0710 -3.9900 4.9939 20 1 -0.2697 -4.3233 7.2587 21 1 -2.0171 -2.7009 6.8166 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.3349 -0.8406 -0.8766 28 1 4.5377 0.2243 -1.7277 29 1 5.1775 -1.2640 0.6843 30 1 6.0010 0.2936 0.2382 31 1 1.6074 -0.4634 2.4654 32 1 2.8899 -1.6541 2.7899 33 1 2.9546 -0.9387 5.1629 34 1 1.6721 0.2522 4.8391 35 1 0.5679 -1.4266 7.9250 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432275445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:27 Heat of formation + Delta-G solvation = -117.305059 kcal Electronic energy + Delta-G solvation = -18957.230712 eV Core-core repulsion = 15889.674118 eV Total energy + Delta-G solvation = -3067.556595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44198 -38.24223 -37.99511 -37.03426 -35.92248 -33.14781 -30.49687 -29.32074 -27.59117 -27.04573 -24.15075 -23.64487 -21.70405 -19.74370 -19.05369 -18.27919 -17.55382 -17.30722 -17.03147 -16.58759 -16.49950 -16.31786 -15.47465 -14.93901 -14.81422 -14.50008 -14.22432 -13.73984 -13.40597 -13.28437 -13.16142 -12.99936 -12.96708 -12.83774 -12.78328 -12.32526 -12.28523 -12.12031 -11.80965 -11.58018 -11.43138 -11.11336 -10.68559 -10.57896 -9.93454 -8.28525 -6.43033 -0.72743 1.38438 1.39782 1.53344 1.71025 2.36053 2.80254 2.86754 3.04027 3.06203 3.62401 3.75067 4.00762 4.06637 4.08315 4.40186 4.44764 4.51918 4.58687 4.64414 4.68271 4.72277 4.76213 4.94340 5.07340 5.15049 5.23271 5.25562 5.48552 5.65551 5.68466 6.03722 6.23844 6.70230 7.27092 8.84355 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.006605 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.389554 B = 4238.013313 C = 4923.508321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.030 3.970 4 C 0.148 3.852 5 H 0.130 0.870 6 C -0.115 4.115 7 C 0.117 3.883 8 N -1.043 6.043 9 S 2.624 3.376 10 O -1.003 7.003 11 O -0.999 6.999 12 C -0.574 4.574 13 C 0.023 3.977 14 C -0.536 4.536 15 H 0.074 0.926 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.977 3.023 19 H -0.255 1.255 20 H -0.277 1.277 21 H -0.276 1.276 22 H 0.029 0.971 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 2.302 -21.025 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C -0.047 4.047 4 C 0.043 3.957 5 H 0.147 0.853 6 C -0.154 4.154 7 C -0.007 4.007 8 N -0.885 5.885 9 S 2.725 3.275 10 O -0.994 6.994 11 O -0.989 6.989 12 C -0.706 4.706 13 C -0.016 4.016 14 C -0.575 4.575 15 H 0.092 0.908 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.800 3.200 19 H -0.179 1.179 20 H -0.202 1.202 21 H -0.201 1.201 22 H 0.048 0.952 23 H 0.085 0.915 24 H 0.111 0.889 25 H 0.121 0.879 26 H 0.058 0.942 27 H 0.118 0.882 28 H 0.133 0.867 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.237 2.802 -20.001 20.454 hybrid contribution -1.175 -0.521 0.949 1.598 sum 2.062 2.281 -19.052 19.298 Atomic orbital electron populations 1.22910 0.80172 1.03661 1.00603 1.87859 1.20584 1.27570 1.95512 1.22958 0.93776 0.85549 1.02420 1.22831 0.92013 0.99437 0.81456 0.85270 1.23486 0.97631 0.97073 0.97233 1.23024 0.93125 0.96917 0.87678 1.60274 1.49087 1.58562 1.20550 1.04187 0.75202 0.75624 0.72516 1.93463 1.44608 1.85806 1.75486 1.93453 1.81205 1.38920 1.85350 1.30274 1.16851 1.17502 1.05969 1.18813 0.96961 0.97717 0.88059 1.21496 1.22405 1.18581 0.94998 0.90756 1.26159 0.99480 0.99052 0.95613 1.70113 1.44741 1.41784 1.00899 0.85225 0.77856 0.78080 0.78842 1.17875 1.20215 1.20138 0.95221 0.91546 0.88918 0.87925 0.94229 0.88241 0.86653 0.89991 0.88177 0.84685 0.84840 0.97891 0.97863 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 11.01 113.37 1.25 1.72 16 2 O -0.40 -9.46 8.30 -148.98 -1.24 -10.69 16 3 C 0.03 0.65 6.19 71.98 0.45 1.10 16 4 C 0.15 2.95 4.78 45.09 0.22 3.17 16 5 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 6 C -0.11 -1.67 7.69 31.25 0.24 -1.43 16 7 C 0.12 2.29 8.92 86.44 0.77 3.06 16 8 N -1.04 -29.45 3.84 -505.39 -1.94 -31.39 16 9 S 2.62 106.23 5.81 -56.49 -0.33 105.90 16 10 O -1.00 -46.74 18.03 -127.65 -2.30 -49.04 16 11 O -1.00 -45.45 17.45 -127.65 -2.23 -47.67 16 12 C -0.57 -24.43 6.12 71.98 0.44 -23.99 16 13 C 0.02 1.30 4.98 29.85 0.15 1.45 16 14 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 15 H 0.07 3.98 7.74 -2.91 -0.02 3.96 16 16 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 17 N -0.94 -58.32 13.29 21.45 0.28 -58.03 16 18 Si 0.98 44.10 29.54 68.60 2.03 46.13 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.04 1.08 7.56 -2.39 -0.02 1.06 16 27 H 0.10 1.65 6.89 -2.39 -0.02 1.63 16 28 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.13 5.35 7.27 -2.39 -0.02 5.33 16 32 H 0.13 5.16 8.14 -2.39 -0.02 5.14 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -79.64 309.18 -0.46 -80.10 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.06 Total: 10.06 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 4.21 Total: -45.36 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -1.66 Total: -89.42 kcal Atomic # 8 Polarization: -101.64 SS G_CDS: -5.77 Total: -107.40 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 106.23 SS G_CDS: -0.33 Total: 105.90 kcal Total: -79.64 -0.46 -80.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432275445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.207 kcal (2) G-P(sol) polarization free energy of solvation -79.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds