Wall clock time and date at job start Mon Mar 30 2020 05:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34746 * 117.00008 * 2 1 4 4 O 1.21504 * 120.00183 * 359.97438 * 3 2 1 5 5 C 1.47490 * 120.00083 * 180.02562 * 3 2 1 6 6 C 1.39832 * 120.11425 * 0.02562 * 5 3 2 7 7 C 1.37735 * 120.18693 * 180.02562 * 6 5 3 8 8 C 1.38986 * 120.27592 * 0.28979 * 7 6 5 9 9 C 1.39722 * 119.76022 * 359.32362 * 8 7 6 10 10 C 1.38388 * 120.26613 * 0.70783 * 9 8 7 11 11 N 1.39898 * 119.76411 * 180.55253 * 9 8 7 12 12 C 1.36813 * 121.13109 * 166.39578 * 11 9 8 13 13 H 1.08002 * 119.99833 * 335.16435 * 12 11 9 14 14 C 1.38770 * 120.00210 * 155.16674 * 12 11 9 15 15 N 1.31610 * 119.99952 * 345.38775 * 14 12 11 16 16 Si 1.86801 * 119.99941 * 165.39425 * 14 12 11 17 17 H 1.48492 * 109.47054 * 59.99730 * 16 14 12 18 18 H 1.48502 * 109.46744 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46910 * 299.99639 * 16 14 12 20 20 C 1.47277 * 117.74373 * 346.42301 * 11 9 8 21 21 C 1.53532 * 107.59822 * 42.02704 * 20 11 9 22 22 O 1.35732 * 119.52442 * 179.97438 * 8 7 6 23 23 H 1.08997 * 109.47172 * 300.00069 * 1 2 3 24 24 H 1.09005 * 109.46828 * 60.00409 * 1 2 3 25 25 H 1.08997 * 109.47021 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.90717 * 0.02562 * 6 5 3 27 27 H 1.08003 * 119.86408 * 180.02562 * 7 6 5 28 28 H 1.08004 * 120.13659 * 179.62242 * 10 9 8 29 29 H 0.97000 * 120.00155 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.83723 * 161.55739 * 20 11 9 31 31 H 1.09000 * 109.82864 * 282.50692 * 20 11 9 32 32 H 1.09009 * 109.58119 * 61.59225 * 21 20 11 33 33 H 1.09004 * 109.58555 * 182.00344 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5366 1.2778 -0.0006 6 6 4.3005 0.1066 -0.0017 7 6 5.6761 0.1770 -0.0017 8 6 6.3146 1.4115 0.0055 9 6 5.5559 2.5847 -0.0016 10 6 4.1734 2.5214 -0.0010 11 7 6.1985 3.8274 -0.0061 12 6 5.5130 4.9772 -0.2885 13 1 4.6129 4.9368 -0.8839 14 6 5.9742 6.1953 0.1902 15 7 6.8863 6.2270 1.1385 16 14 5.3004 7.7901 -0.5112 17 1 3.8336 7.8487 -0.2871 18 1 5.9503 8.9417 0.1646 19 1 5.5812 7.8477 -1.9682 20 6 7.6383 3.8557 0.3027 21 6 8.2930 2.6745 -0.4275 22 8 7.6709 1.4630 0.0059 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 3.8106 -0.8559 -0.0025 27 1 6.2610 -0.7310 -0.0029 28 1 3.5890 3.4297 -0.0003 29 1 7.2090 7.0784 1.4729 30 1 8.0729 4.7927 -0.0455 31 1 7.7879 3.7548 1.3777 32 1 8.1581 2.7897 -1.5031 33 1 9.3569 2.6437 -0.1920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527429344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:10 Heat of formation + Delta-G solvation = -78.871564 kcal Electronic energy + Delta-G solvation = -19703.453436 eV Core-core repulsion = 16502.119491 eV Total energy + Delta-G solvation = -3201.333945 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16075 -39.57196 -36.64055 -35.84599 -35.69924 -32.08518 -30.47692 -29.62228 -27.97916 -27.13392 -24.61357 -23.70133 -22.13012 -21.09378 -19.45005 -17.89238 -17.43075 -16.68612 -16.45226 -15.96495 -15.57316 -15.32788 -14.67407 -14.01890 -13.54979 -13.37609 -13.28029 -13.09535 -12.90621 -12.82482 -12.31342 -11.95368 -11.66124 -11.43311 -11.22645 -10.84538 -10.69186 -10.52945 -10.47083 -10.24482 -10.02314 -9.74852 -9.49796 -8.72167 -7.76557 -6.75120 -6.49868 -3.87103 1.48257 2.31355 3.07766 3.08965 3.13933 3.16633 3.22435 3.90311 4.06113 4.53244 4.69562 4.92385 5.23303 5.28996 5.31346 5.47909 5.62683 5.68151 5.73943 5.82491 6.04794 6.07958 6.35904 6.48324 6.62735 6.73391 6.90886 6.98217 7.14224 7.16635 7.26986 7.43119 7.75851 8.16267 8.24164 8.47506 9.08583 9.45387 10.51633 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.007259 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.110800 B = 3856.584873 C = 5291.533304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.513 3.487 4 O -0.515 6.515 5 C -0.112 4.112 6 C -0.143 4.143 7 C -0.112 4.112 8 C 0.046 3.954 9 C 0.136 3.864 10 C -0.113 4.113 11 N -0.450 5.450 12 C -0.300 4.300 13 H 0.096 0.904 14 C 0.028 3.972 15 N -0.875 5.875 16 Si 0.927 3.073 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.111 3.889 21 C 0.036 3.964 22 O -0.321 6.321 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.135 0.865 29 H 0.272 0.728 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -8.386 -2.427 9.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.360 3.640 4 O -0.405 6.405 5 C -0.114 4.114 6 C -0.166 4.166 7 C -0.132 4.132 8 C -0.005 4.005 9 C 0.022 3.978 10 C -0.138 4.138 11 N -0.140 5.140 12 C -0.428 4.428 13 H 0.113 0.887 14 C -0.176 4.176 15 N -0.511 5.511 16 Si 0.753 3.247 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.198 1.198 20 C -0.013 4.013 21 C -0.041 4.041 22 O -0.235 6.235 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.153 0.847 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.310 -7.736 -2.251 8.381 hybrid contribution -0.529 1.220 -0.249 1.352 sum -2.839 -6.516 -2.499 7.534 Atomic orbital electron populations 1.23169 0.77201 1.03057 1.02314 1.86579 1.22583 1.33456 1.84873 1.21477 0.89614 0.80814 0.72118 1.90802 1.67035 1.36053 1.46602 1.18567 0.87337 0.94722 1.10790 1.20450 0.92446 0.96696 1.07000 1.19990 0.93637 0.94620 1.04921 1.18586 0.81822 0.92723 1.07329 1.17937 0.91677 0.86188 1.02036 1.20399 0.92217 0.96454 1.04680 1.42645 1.05757 1.02081 1.63556 1.19514 1.10555 0.83015 1.29721 0.88651 1.25365 0.97455 0.99820 0.94985 1.70021 1.29714 1.27320 1.24003 0.85962 0.79405 0.80257 0.79050 1.19513 1.20708 1.19766 1.22148 0.81956 0.97922 0.99292 1.23418 0.97043 0.84948 0.98648 1.85840 1.17166 1.37919 1.82567 0.92190 0.92207 0.88517 0.85887 0.86090 0.84717 0.91805 0.87830 0.91615 0.92532 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.57 101.05 1.07 1.50 16 2 O -0.36 -5.72 9.81 -40.62 -0.40 -6.11 16 3 C 0.51 9.92 7.89 34.50 0.27 10.19 16 4 O -0.52 -11.15 16.13 -19.27 -0.31 -11.46 16 5 C -0.11 -2.27 5.87 -104.98 -0.62 -2.89 16 6 C -0.14 -2.58 9.60 -39.17 -0.38 -2.96 16 7 C -0.11 -2.07 9.95 -39.49 -0.39 -2.46 16 8 C 0.05 0.98 6.53 -38.75 -0.25 0.72 16 9 C 0.14 3.17 6.33 -83.57 -0.53 2.64 16 10 C -0.11 -2.58 8.79 -38.97 -0.34 -2.93 16 11 N -0.45 -11.11 3.03 -112.09 -0.34 -11.44 16 12 C -0.30 -7.75 8.81 -15.13 -0.13 -7.88 16 13 H 0.10 2.45 6.92 -52.49 -0.36 2.09 16 14 C 0.03 0.71 5.02 -17.45 -0.09 0.62 16 15 N -0.87 -22.54 11.09 55.49 0.62 -21.93 16 16 Si 0.93 19.77 29.58 -169.99 -5.03 14.74 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 C 0.11 2.46 5.16 -3.34 -0.02 2.44 16 21 C 0.04 0.66 7.18 37.43 0.27 0.93 16 22 O -0.32 -6.48 10.31 -18.90 -0.19 -6.68 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.12 1.89 7.60 -52.49 -0.40 1.49 16 27 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 28 H 0.14 3.29 6.29 -52.48 -0.33 2.96 16 29 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.10 2.36 6.54 -51.93 -0.34 2.02 16 31 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 32 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 33 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 285.53 15.07 4.30 4.30 Total: -1.00 -28.79 285.53 -6.02 -34.81 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.52 Total: 3.84 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.14 Total: -0.07 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.28 Total: -33.37 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.90 Total: -24.25 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.79 -6.02 -34.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527429344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.062 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds