Wall clock time and date at job start Mon Mar 30 2020 05:18:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34746 * 117.00008 * 2 1
4 4 O 1.21504 * 120.00183 * 359.97438 * 3 2 1
5 5 C 1.47490 * 120.00083 * 180.02562 * 3 2 1
6 6 C 1.39832 * 120.11425 * 0.02562 * 5 3 2
7 7 C 1.37735 * 120.18693 * 180.02562 * 6 5 3
8 8 C 1.38986 * 120.27592 * 0.28979 * 7 6 5
9 9 C 1.39722 * 119.76022 * 359.32362 * 8 7 6
10 10 C 1.38388 * 120.26613 * 0.70783 * 9 8 7
11 11 N 1.39898 * 119.76411 * 180.55253 * 9 8 7
12 12 C 1.36813 * 121.13109 * 166.39578 * 11 9 8
13 13 H 1.08002 * 119.99833 * 335.16435 * 12 11 9
14 14 C 1.38770 * 120.00210 * 155.16674 * 12 11 9
15 15 N 1.31610 * 119.99952 * 345.38775 * 14 12 11
16 16 Si 1.86801 * 119.99941 * 165.39425 * 14 12 11
17 17 H 1.48492 * 109.47054 * 59.99730 * 16 14 12
18 18 H 1.48502 * 109.46744 * 179.97438 * 16 14 12
19 19 H 1.48498 * 109.46910 * 299.99639 * 16 14 12
20 20 C 1.47277 * 117.74373 * 346.42301 * 11 9 8
21 21 C 1.53532 * 107.59822 * 42.02704 * 20 11 9
22 22 O 1.35732 * 119.52442 * 179.97438 * 8 7 6
23 23 H 1.08997 * 109.47172 * 300.00069 * 1 2 3
24 24 H 1.09005 * 109.46828 * 60.00409 * 1 2 3
25 25 H 1.08997 * 109.47021 * 180.02562 * 1 2 3
26 26 H 1.07999 * 119.90717 * 0.02562 * 6 5 3
27 27 H 1.08003 * 119.86408 * 180.02562 * 7 6 5
28 28 H 1.08004 * 120.13659 * 179.62242 * 10 9 8
29 29 H 0.97000 * 120.00155 * 179.97438 * 15 14 12
30 30 H 1.09000 * 109.83723 * 161.55739 * 20 11 9
31 31 H 1.09000 * 109.82864 * 282.50692 * 20 11 9
32 32 H 1.09009 * 109.58119 * 61.59225 * 21 20 11
33 33 H 1.09004 * 109.58555 * 182.00344 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0637 1.2006 0.0000
4 8 1.4020 2.2196 -0.0005
5 6 3.5366 1.2778 -0.0006
6 6 4.3005 0.1066 -0.0017
7 6 5.6761 0.1770 -0.0017
8 6 6.3146 1.4115 0.0055
9 6 5.5559 2.5847 -0.0016
10 6 4.1734 2.5214 -0.0010
11 7 6.1985 3.8274 -0.0061
12 6 5.5130 4.9772 -0.2885
13 1 4.6129 4.9368 -0.8839
14 6 5.9742 6.1953 0.1902
15 7 6.8863 6.2270 1.1385
16 14 5.3004 7.7901 -0.5112
17 1 3.8336 7.8487 -0.2871
18 1 5.9503 8.9417 0.1646
19 1 5.5812 7.8477 -1.9682
20 6 7.6383 3.8557 0.3027
21 6 8.2930 2.6745 -0.4275
22 8 7.6709 1.4630 0.0059
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0276 0.0005
26 1 3.8106 -0.8559 -0.0025
27 1 6.2610 -0.7310 -0.0029
28 1 3.5890 3.4297 -0.0003
29 1 7.2090 7.0784 1.4729
30 1 8.0729 4.7927 -0.0455
31 1 7.7879 3.7548 1.3777
32 1 8.1581 2.7897 -1.5031
33 1 9.3569 2.6437 -0.1920
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000527429344.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:10
Heat of formation + Delta-G solvation = -78.871564 kcal
Electronic energy + Delta-G solvation = -19703.453436 eV
Core-core repulsion = 16502.119491 eV
Total energy + Delta-G solvation = -3201.333945 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.099 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.16075 -39.57196 -36.64055 -35.84599 -35.69924 -32.08518 -30.47692 -29.62228
-27.97916 -27.13392 -24.61357 -23.70133 -22.13012 -21.09378 -19.45005 -17.89238
-17.43075 -16.68612 -16.45226 -15.96495 -15.57316 -15.32788 -14.67407 -14.01890
-13.54979 -13.37609 -13.28029 -13.09535 -12.90621 -12.82482 -12.31342 -11.95368
-11.66124 -11.43311 -11.22645 -10.84538 -10.69186 -10.52945 -10.47083 -10.24482
-10.02314 -9.74852 -9.49796 -8.72167 -7.76557 -6.75120 -6.49868 -3.87103
1.48257 2.31355 3.07766 3.08965 3.13933 3.16633 3.22435 3.90311
4.06113 4.53244 4.69562 4.92385 5.23303 5.28996 5.31346 5.47909
5.62683 5.68151 5.73943 5.82491 6.04794 6.07958 6.35904 6.48324
6.62735 6.73391 6.90886 6.98217 7.14224 7.16635 7.26986 7.43119
7.75851 8.16267 8.24164 8.47506 9.08583 9.45387 10.51633
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.017772 B = 0.007259 C = 0.005290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1575.110800 B = 3856.584873 C = 5291.533304
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.358 6.358
3 C 0.513 3.487
4 O -0.515 6.515
5 C -0.112 4.112
6 C -0.143 4.143
7 C -0.112 4.112
8 C 0.046 3.954
9 C 0.136 3.864
10 C -0.113 4.113
11 N -0.450 5.450
12 C -0.300 4.300
13 H 0.096 0.904
14 C 0.028 3.972
15 N -0.875 5.875
16 Si 0.927 3.073
17 H -0.270 1.270
18 H -0.282 1.282
19 H -0.272 1.272
20 C 0.111 3.889
21 C 0.036 3.964
22 O -0.321 6.321
23 H 0.059 0.941
24 H 0.059 0.941
25 H 0.096 0.904
26 H 0.123 0.877
27 H 0.121 0.879
28 H 0.135 0.865
29 H 0.272 0.728
30 H 0.104 0.896
31 H 0.066 0.934
32 H 0.056 0.944
33 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.482 -8.386 -2.427 9.076
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.275 6.275
3 C 0.360 3.640
4 O -0.405 6.405
5 C -0.114 4.114
6 C -0.166 4.166
7 C -0.132 4.132
8 C -0.005 4.005
9 C 0.022 3.978
10 C -0.138 4.138
11 N -0.140 5.140
12 C -0.428 4.428
13 H 0.113 0.887
14 C -0.176 4.176
15 N -0.511 5.511
16 Si 0.753 3.247
17 H -0.195 1.195
18 H -0.207 1.207
19 H -0.198 1.198
20 C -0.013 4.013
21 C -0.041 4.041
22 O -0.235 6.235
23 H 0.078 0.922
24 H 0.078 0.922
25 H 0.115 0.885
26 H 0.141 0.859
27 H 0.139 0.861
28 H 0.153 0.847
29 H 0.082 0.918
30 H 0.122 0.878
31 H 0.084 0.916
32 H 0.075 0.925
33 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -2.310 -7.736 -2.251 8.381
hybrid contribution -0.529 1.220 -0.249 1.352
sum -2.839 -6.516 -2.499 7.534
Atomic orbital electron populations
1.23169 0.77201 1.03057 1.02314 1.86579 1.22583 1.33456 1.84873
1.21477 0.89614 0.80814 0.72118 1.90802 1.67035 1.36053 1.46602
1.18567 0.87337 0.94722 1.10790 1.20450 0.92446 0.96696 1.07000
1.19990 0.93637 0.94620 1.04921 1.18586 0.81822 0.92723 1.07329
1.17937 0.91677 0.86188 1.02036 1.20399 0.92217 0.96454 1.04680
1.42645 1.05757 1.02081 1.63556 1.19514 1.10555 0.83015 1.29721
0.88651 1.25365 0.97455 0.99820 0.94985 1.70021 1.29714 1.27320
1.24003 0.85962 0.79405 0.80257 0.79050 1.19513 1.20708 1.19766
1.22148 0.81956 0.97922 0.99292 1.23418 0.97043 0.84948 0.98648
1.85840 1.17166 1.37919 1.82567 0.92190 0.92207 0.88517 0.85887
0.86090 0.84717 0.91805 0.87830 0.91615 0.92532 0.87933
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.43 10.57 101.05 1.07 1.50 16
2 O -0.36 -5.72 9.81 -40.62 -0.40 -6.11 16
3 C 0.51 9.92 7.89 34.50 0.27 10.19 16
4 O -0.52 -11.15 16.13 -19.27 -0.31 -11.46 16
5 C -0.11 -2.27 5.87 -104.98 -0.62 -2.89 16
6 C -0.14 -2.58 9.60 -39.17 -0.38 -2.96 16
7 C -0.11 -2.07 9.95 -39.49 -0.39 -2.46 16
8 C 0.05 0.98 6.53 -38.75 -0.25 0.72 16
9 C 0.14 3.17 6.33 -83.57 -0.53 2.64 16
10 C -0.11 -2.58 8.79 -38.97 -0.34 -2.93 16
11 N -0.45 -11.11 3.03 -112.09 -0.34 -11.44 16
12 C -0.30 -7.75 8.81 -15.13 -0.13 -7.88 16
13 H 0.10 2.45 6.92 -52.49 -0.36 2.09 16
14 C 0.03 0.71 5.02 -17.45 -0.09 0.62 16
15 N -0.87 -22.54 11.09 55.49 0.62 -21.93 16
16 Si 0.93 19.77 29.58 -169.99 -5.03 14.74 16
17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16
18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
20 C 0.11 2.46 5.16 -3.34 -0.02 2.44 16
21 C 0.04 0.66 7.18 37.43 0.27 0.93 16
22 O -0.32 -6.48 10.31 -18.90 -0.19 -6.68 16
23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
25 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16
26 H 0.12 1.89 7.60 -52.49 -0.40 1.49 16
27 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16
28 H 0.14 3.29 6.29 -52.48 -0.33 2.96 16
29 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16
30 H 0.10 2.36 6.54 -51.93 -0.34 2.02 16
31 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16
32 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16
33 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16
LS Contribution 285.53 15.07 4.30 4.30
Total: -1.00 -28.79 285.53 -6.02 -34.81
By element:
Atomic # 1 Polarization: 7.36 SS G_CDS: -3.52 Total: 3.84 kcal
Atomic # 6 Polarization: 1.07 SS G_CDS: -1.14 Total: -0.07 kcal
Atomic # 7 Polarization: -33.65 SS G_CDS: 0.28 Total: -33.37 kcal
Atomic # 8 Polarization: -23.35 SS G_CDS: -0.90 Total: -24.25 kcal
Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -28.79 -6.02 -34.81 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000527429344.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.062 kcal
(2) G-P(sol) polarization free energy of solvation -28.792 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.854 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.810 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.872 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds