Wall clock time and date at job start Mon Mar 30 2020 05:18:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34746 * 117.00008 * 2 1
4 4 O 1.21504 * 120.00183 * 359.97438 * 3 2 1
5 5 C 1.47490 * 120.00083 * 180.02562 * 3 2 1
6 6 C 1.39832 * 120.11425 * 0.02562 * 5 3 2
7 7 C 1.37735 * 120.18693 * 180.02562 * 6 5 3
8 8 C 1.38986 * 120.27592 * 0.28979 * 7 6 5
9 9 C 1.39722 * 119.76022 * 359.32362 * 8 7 6
10 10 C 1.38388 * 120.26613 * 0.70783 * 9 8 7
11 11 N 1.39898 * 119.76411 * 180.55253 * 9 8 7
12 12 C 1.36813 * 121.13109 * 166.39578 * 11 9 8
13 13 H 1.08002 * 119.99833 * 335.16435 * 12 11 9
14 14 C 1.38770 * 120.00210 * 155.16674 * 12 11 9
15 15 N 1.31610 * 119.99952 * 345.38775 * 14 12 11
16 16 Si 1.86801 * 119.99941 * 165.39425 * 14 12 11
17 17 H 1.48492 * 109.47054 * 59.99730 * 16 14 12
18 18 H 1.48502 * 109.46744 * 179.97438 * 16 14 12
19 19 H 1.48498 * 109.46910 * 299.99639 * 16 14 12
20 20 C 1.47277 * 117.74373 * 346.42301 * 11 9 8
21 21 C 1.53532 * 107.59822 * 42.02704 * 20 11 9
22 22 O 1.35732 * 119.52442 * 179.97438 * 8 7 6
23 23 H 1.08997 * 109.47172 * 300.00069 * 1 2 3
24 24 H 1.09005 * 109.46828 * 60.00409 * 1 2 3
25 25 H 1.08997 * 109.47021 * 180.02562 * 1 2 3
26 26 H 1.07999 * 119.90717 * 0.02562 * 6 5 3
27 27 H 1.08003 * 119.86408 * 180.02562 * 7 6 5
28 28 H 1.08004 * 120.13659 * 179.62242 * 10 9 8
29 29 H 0.97000 * 120.00155 * 179.97438 * 15 14 12
30 30 H 1.09000 * 109.83723 * 161.55739 * 20 11 9
31 31 H 1.09000 * 109.82864 * 282.50692 * 20 11 9
32 32 H 1.09009 * 109.58119 * 61.59225 * 21 20 11
33 33 H 1.09004 * 109.58555 * 182.00344 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0637 1.2006 0.0000
4 8 1.4020 2.2196 -0.0005
5 6 3.5366 1.2778 -0.0006
6 6 4.3005 0.1066 -0.0017
7 6 5.6761 0.1770 -0.0017
8 6 6.3146 1.4115 0.0055
9 6 5.5559 2.5847 -0.0016
10 6 4.1734 2.5214 -0.0010
11 7 6.1985 3.8274 -0.0061
12 6 5.5130 4.9772 -0.2885
13 1 4.6129 4.9368 -0.8839
14 6 5.9742 6.1953 0.1902
15 7 6.8863 6.2270 1.1385
16 14 5.3004 7.7901 -0.5112
17 1 3.8336 7.8487 -0.2871
18 1 5.9503 8.9417 0.1646
19 1 5.5812 7.8477 -1.9682
20 6 7.6383 3.8557 0.3027
21 6 8.2930 2.6745 -0.4275
22 8 7.6709 1.4630 0.0059
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0276 0.0005
26 1 3.8106 -0.8559 -0.0025
27 1 6.2610 -0.7310 -0.0029
28 1 3.5890 3.4297 -0.0003
29 1 7.2090 7.0784 1.4729
30 1 8.0729 4.7927 -0.0455
31 1 7.7879 3.7548 1.3777
32 1 8.1581 2.7897 -1.5031
33 1 9.3569 2.6437 -0.1920
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000527429344.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:10
Heat of formation + Delta-G solvation = -95.905096 kcal
Electronic energy + Delta-G solvation = -19704.192065 eV
Core-core repulsion = 16502.119491 eV
Total energy + Delta-G solvation = -3202.072574 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.099 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.72865 -41.10206 -38.18192 -37.43408 -37.31916 -33.91548 -32.06596 -31.24996
-29.54824 -28.45429 -26.27530 -25.35917 -23.72717 -22.68207 -21.00536 -19.57923
-19.07657 -18.29128 -17.94133 -17.30873 -17.19431 -17.02052 -16.33824 -15.63776
-15.14828 -15.05612 -14.74646 -14.62191 -14.43541 -14.33682 -13.82942 -13.48610
-13.14959 -12.97105 -12.91589 -12.55017 -12.34051 -12.19402 -11.82450 -11.76653
-11.58619 -11.41950 -11.27091 -10.51364 -9.38456 -8.54641 -8.33107 -5.79923
-0.13431 0.69875 1.37470 1.39573 1.47167 1.62846 1.75822 2.18991
2.45181 2.81353 3.01435 3.13798 3.82903 3.90850 4.08021 4.23509
4.35280 4.37212 4.39726 4.47695 4.56127 4.70163 4.72479 4.84492
5.11284 5.15877 5.20774 5.29758 5.41095 5.48592 5.54796 5.82058
5.99230 6.48094 6.66021 6.77280 7.27788 7.62388 8.65666
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.017772 B = 0.007259 C = 0.005290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1575.110800 B = 3856.584873 C = 5291.533304
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.350 6.350
3 C 0.517 3.483
4 O -0.548 6.548
5 C -0.123 4.123
6 C -0.110 4.110
7 C -0.105 4.105
8 C 0.043 3.957
9 C 0.111 3.889
10 C -0.137 4.137
11 N -0.481 5.481
12 C -0.320 4.320
13 H 0.080 0.920
14 C -0.012 4.012
15 N -0.904 5.904
16 Si 0.987 3.013
17 H -0.276 1.276
18 H -0.275 1.275
19 H -0.265 1.265
20 C 0.118 3.882
21 C 0.045 3.955
22 O -0.319 6.319
23 H 0.058 0.942
24 H 0.060 0.940
25 H 0.142 0.858
26 H 0.164 0.836
27 H 0.162 0.838
28 H 0.104 0.896
29 H 0.272 0.728
30 H 0.089 0.911
31 H 0.040 0.960
32 H 0.061 0.939
33 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.631 -11.252 -2.977 11.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.266 6.266
3 C 0.365 3.635
4 O -0.440 6.440
5 C -0.126 4.126
6 C -0.132 4.132
7 C -0.125 4.125
8 C -0.008 4.008
9 C 0.001 3.999
10 C -0.162 4.162
11 N -0.175 5.175
12 C -0.448 4.448
13 H 0.098 0.902
14 C -0.213 4.213
15 N -0.541 5.541
16 Si 0.811 3.189
17 H -0.202 1.202
18 H -0.199 1.199
19 H -0.190 1.190
20 C -0.006 4.006
21 C -0.031 4.031
22 O -0.233 6.233
23 H 0.077 0.923
24 H 0.078 0.922
25 H 0.160 0.840
26 H 0.182 0.818
27 H 0.180 0.820
28 H 0.122 0.878
29 H 0.081 0.919
30 H 0.108 0.892
31 H 0.059 0.941
32 H 0.079 0.921
33 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -2.474 -10.674 -2.809 11.311
hybrid contribution -0.628 1.801 -0.063 1.908
sum -3.102 -8.873 -2.873 9.829
Atomic orbital electron populations
1.23602 0.74547 1.06016 1.02367 1.86541 1.25030 1.31048 1.83983
1.21328 0.89301 0.81398 0.71490 1.90791 1.67625 1.37455 1.48143
1.18761 0.88484 0.94555 1.10752 1.20945 0.92297 0.97287 1.02639
1.20487 0.94054 0.94896 1.03016 1.18993 0.82375 0.92957 1.06432
1.18329 0.92200 0.86858 1.02548 1.20288 0.92274 0.96731 1.06886
1.42741 1.06609 1.02125 1.66044 1.19553 1.10749 0.84339 1.30168
0.90195 1.26065 0.97888 1.02147 0.95213 1.70115 1.31060 1.27728
1.25216 0.85071 0.78199 0.76974 0.78683 1.20189 1.19946 1.19015
1.21984 0.81421 0.99020 0.98148 1.23548 0.98562 0.82674 0.98316
1.85835 1.16510 1.38355 1.82606 0.92296 0.92165 0.84038 0.81844
0.82022 0.87824 0.91853 0.89250 0.94139 0.92067 0.83780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.57 10.57 113.37 1.20 1.77 16
2 O -0.35 -10.13 9.81 -56.57 -0.55 -10.68 16
3 C 0.52 19.48 7.89 70.26 0.55 20.04 16
4 O -0.55 -24.03 16.13 19.82 0.32 -23.71 16
5 C -0.12 -4.89 5.87 -20.09 -0.12 -5.00 16
6 C -0.11 -3.55 9.60 22.54 0.22 -3.33 16
7 C -0.11 -3.48 9.95 22.33 0.22 -3.25 16
8 C 0.04 1.75 6.53 22.81 0.15 1.90 16
9 C 0.11 5.33 6.33 38.25 0.24 5.57 16
10 C -0.14 -6.47 8.79 22.66 0.20 -6.27 16
11 N -0.48 -24.77 3.03 -508.56 -1.54 -26.31 16
12 C -0.32 -17.48 8.81 84.04 0.74 -16.74 16
13 H 0.08 4.44 6.92 -2.91 -0.02 4.42 16
14 C -0.01 -0.64 5.02 84.85 0.43 -0.21 16
15 N -0.90 -48.62 11.09 21.64 0.24 -48.38 16
16 Si 0.99 42.15 29.58 68.60 2.03 44.18 16
17 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16
18 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16
19 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16
20 C 0.12 5.40 5.16 86.41 0.45 5.84 16
21 C 0.04 1.60 7.18 72.16 0.52 2.12 16
22 O -0.32 -12.22 10.31 -90.55 -0.93 -13.16 16
23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
24 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16
25 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16
26 H 0.16 4.02 7.60 -2.91 -0.02 4.00 16
27 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16
28 H 0.10 5.47 6.29 -2.91 -0.02 5.46 16
29 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16
30 H 0.09 4.26 6.54 -2.39 -0.02 4.24 16
31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16
32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16
33 H 0.14 3.90 8.14 -2.38 -0.02 3.88 16
Total: -1.00 -65.73 285.53 5.49 -60.24
By element:
Atomic # 1 Polarization: 14.25 SS G_CDS: 1.13 Total: 15.39 kcal
Atomic # 6 Polarization: -2.36 SS G_CDS: 4.79 Total: 2.43 kcal
Atomic # 7 Polarization: -73.39 SS G_CDS: -1.30 Total: -74.69 kcal
Atomic # 8 Polarization: -46.38 SS G_CDS: -1.17 Total: -47.55 kcal
Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal
Total: -65.73 5.49 -60.24 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000527429344.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.665 kcal
(2) G-P(sol) polarization free energy of solvation -65.729 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.394 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.240 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.905 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds