Wall clock time and date at job start Mon Mar 30 2020 05:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34746 * 117.00008 * 2 1 4 4 O 1.21504 * 120.00183 * 359.97438 * 3 2 1 5 5 C 1.47490 * 120.00083 * 180.02562 * 3 2 1 6 6 C 1.39832 * 120.11425 * 0.02562 * 5 3 2 7 7 C 1.37735 * 120.18693 * 180.02562 * 6 5 3 8 8 C 1.38986 * 120.27592 * 0.28979 * 7 6 5 9 9 C 1.39722 * 119.76022 * 359.32362 * 8 7 6 10 10 C 1.38388 * 120.26613 * 0.70783 * 9 8 7 11 11 N 1.39898 * 119.76411 * 180.55253 * 9 8 7 12 12 C 1.36813 * 121.13109 * 166.39578 * 11 9 8 13 13 H 1.08002 * 119.99833 * 335.16435 * 12 11 9 14 14 C 1.38770 * 120.00210 * 155.16674 * 12 11 9 15 15 N 1.31610 * 119.99952 * 345.38775 * 14 12 11 16 16 Si 1.86801 * 119.99941 * 165.39425 * 14 12 11 17 17 H 1.48492 * 109.47054 * 59.99730 * 16 14 12 18 18 H 1.48502 * 109.46744 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46910 * 299.99639 * 16 14 12 20 20 C 1.47277 * 117.74373 * 346.42301 * 11 9 8 21 21 C 1.53532 * 107.59822 * 42.02704 * 20 11 9 22 22 O 1.35732 * 119.52442 * 179.97438 * 8 7 6 23 23 H 1.08997 * 109.47172 * 300.00069 * 1 2 3 24 24 H 1.09005 * 109.46828 * 60.00409 * 1 2 3 25 25 H 1.08997 * 109.47021 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.90717 * 0.02562 * 6 5 3 27 27 H 1.08003 * 119.86408 * 180.02562 * 7 6 5 28 28 H 1.08004 * 120.13659 * 179.62242 * 10 9 8 29 29 H 0.97000 * 120.00155 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.83723 * 161.55739 * 20 11 9 31 31 H 1.09000 * 109.82864 * 282.50692 * 20 11 9 32 32 H 1.09009 * 109.58119 * 61.59225 * 21 20 11 33 33 H 1.09004 * 109.58555 * 182.00344 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5366 1.2778 -0.0006 6 6 4.3005 0.1066 -0.0017 7 6 5.6761 0.1770 -0.0017 8 6 6.3146 1.4115 0.0055 9 6 5.5559 2.5847 -0.0016 10 6 4.1734 2.5214 -0.0010 11 7 6.1985 3.8274 -0.0061 12 6 5.5130 4.9772 -0.2885 13 1 4.6129 4.9368 -0.8839 14 6 5.9742 6.1953 0.1902 15 7 6.8863 6.2270 1.1385 16 14 5.3004 7.7901 -0.5112 17 1 3.8336 7.8487 -0.2871 18 1 5.9503 8.9417 0.1646 19 1 5.5812 7.8477 -1.9682 20 6 7.6383 3.8557 0.3027 21 6 8.2930 2.6745 -0.4275 22 8 7.6709 1.4630 0.0059 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 3.8106 -0.8559 -0.0025 27 1 6.2610 -0.7310 -0.0029 28 1 3.5890 3.4297 -0.0003 29 1 7.2090 7.0784 1.4729 30 1 8.0729 4.7927 -0.0455 31 1 7.7879 3.7548 1.3777 32 1 8.1581 2.7897 -1.5031 33 1 9.3569 2.6437 -0.1920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527429344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:10 Heat of formation + Delta-G solvation = -95.905096 kcal Electronic energy + Delta-G solvation = -19704.192065 eV Core-core repulsion = 16502.119491 eV Total energy + Delta-G solvation = -3202.072574 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.72865 -41.10206 -38.18192 -37.43408 -37.31916 -33.91548 -32.06596 -31.24996 -29.54824 -28.45429 -26.27530 -25.35917 -23.72717 -22.68207 -21.00536 -19.57923 -19.07657 -18.29128 -17.94133 -17.30873 -17.19431 -17.02052 -16.33824 -15.63776 -15.14828 -15.05612 -14.74646 -14.62191 -14.43541 -14.33682 -13.82942 -13.48610 -13.14959 -12.97105 -12.91589 -12.55017 -12.34051 -12.19402 -11.82450 -11.76653 -11.58619 -11.41950 -11.27091 -10.51364 -9.38456 -8.54641 -8.33107 -5.79923 -0.13431 0.69875 1.37470 1.39573 1.47167 1.62846 1.75822 2.18991 2.45181 2.81353 3.01435 3.13798 3.82903 3.90850 4.08021 4.23509 4.35280 4.37212 4.39726 4.47695 4.56127 4.70163 4.72479 4.84492 5.11284 5.15877 5.20774 5.29758 5.41095 5.48592 5.54796 5.82058 5.99230 6.48094 6.66021 6.77280 7.27788 7.62388 8.65666 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.007259 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.110800 B = 3856.584873 C = 5291.533304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.517 3.483 4 O -0.548 6.548 5 C -0.123 4.123 6 C -0.110 4.110 7 C -0.105 4.105 8 C 0.043 3.957 9 C 0.111 3.889 10 C -0.137 4.137 11 N -0.481 5.481 12 C -0.320 4.320 13 H 0.080 0.920 14 C -0.012 4.012 15 N -0.904 5.904 16 Si 0.987 3.013 17 H -0.276 1.276 18 H -0.275 1.275 19 H -0.265 1.265 20 C 0.118 3.882 21 C 0.045 3.955 22 O -0.319 6.319 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.142 0.858 26 H 0.164 0.836 27 H 0.162 0.838 28 H 0.104 0.896 29 H 0.272 0.728 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.631 -11.252 -2.977 11.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.365 3.635 4 O -0.440 6.440 5 C -0.126 4.126 6 C -0.132 4.132 7 C -0.125 4.125 8 C -0.008 4.008 9 C 0.001 3.999 10 C -0.162 4.162 11 N -0.175 5.175 12 C -0.448 4.448 13 H 0.098 0.902 14 C -0.213 4.213 15 N -0.541 5.541 16 Si 0.811 3.189 17 H -0.202 1.202 18 H -0.199 1.199 19 H -0.190 1.190 20 C -0.006 4.006 21 C -0.031 4.031 22 O -0.233 6.233 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.160 0.840 26 H 0.182 0.818 27 H 0.180 0.820 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.474 -10.674 -2.809 11.311 hybrid contribution -0.628 1.801 -0.063 1.908 sum -3.102 -8.873 -2.873 9.829 Atomic orbital electron populations 1.23602 0.74547 1.06016 1.02367 1.86541 1.25030 1.31048 1.83983 1.21328 0.89301 0.81398 0.71490 1.90791 1.67625 1.37455 1.48143 1.18761 0.88484 0.94555 1.10752 1.20945 0.92297 0.97287 1.02639 1.20487 0.94054 0.94896 1.03016 1.18993 0.82375 0.92957 1.06432 1.18329 0.92200 0.86858 1.02548 1.20288 0.92274 0.96731 1.06886 1.42741 1.06609 1.02125 1.66044 1.19553 1.10749 0.84339 1.30168 0.90195 1.26065 0.97888 1.02147 0.95213 1.70115 1.31060 1.27728 1.25216 0.85071 0.78199 0.76974 0.78683 1.20189 1.19946 1.19015 1.21984 0.81421 0.99020 0.98148 1.23548 0.98562 0.82674 0.98316 1.85835 1.16510 1.38355 1.82606 0.92296 0.92165 0.84038 0.81844 0.82022 0.87824 0.91853 0.89250 0.94139 0.92067 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.57 113.37 1.20 1.77 16 2 O -0.35 -10.13 9.81 -56.57 -0.55 -10.68 16 3 C 0.52 19.48 7.89 70.26 0.55 20.04 16 4 O -0.55 -24.03 16.13 19.82 0.32 -23.71 16 5 C -0.12 -4.89 5.87 -20.09 -0.12 -5.00 16 6 C -0.11 -3.55 9.60 22.54 0.22 -3.33 16 7 C -0.11 -3.48 9.95 22.33 0.22 -3.25 16 8 C 0.04 1.75 6.53 22.81 0.15 1.90 16 9 C 0.11 5.33 6.33 38.25 0.24 5.57 16 10 C -0.14 -6.47 8.79 22.66 0.20 -6.27 16 11 N -0.48 -24.77 3.03 -508.56 -1.54 -26.31 16 12 C -0.32 -17.48 8.81 84.04 0.74 -16.74 16 13 H 0.08 4.44 6.92 -2.91 -0.02 4.42 16 14 C -0.01 -0.64 5.02 84.85 0.43 -0.21 16 15 N -0.90 -48.62 11.09 21.64 0.24 -48.38 16 16 Si 0.99 42.15 29.58 68.60 2.03 44.18 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 20 C 0.12 5.40 5.16 86.41 0.45 5.84 16 21 C 0.04 1.60 7.18 72.16 0.52 2.12 16 22 O -0.32 -12.22 10.31 -90.55 -0.93 -13.16 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.16 4.02 7.60 -2.91 -0.02 4.00 16 27 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.10 5.47 6.29 -2.91 -0.02 5.46 16 29 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.09 4.26 6.54 -2.39 -0.02 4.24 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.14 3.90 8.14 -2.38 -0.02 3.88 16 Total: -1.00 -65.73 285.53 5.49 -60.24 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.13 Total: 15.39 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 4.79 Total: 2.43 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -1.30 Total: -74.69 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -1.17 Total: -47.55 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -65.73 5.49 -60.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527429344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.665 kcal (2) G-P(sol) polarization free energy of solvation -65.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds