Wall clock time and date at job start Mon Mar 30 2020 05:02:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42900 * 113.99990 * 2 1
4 4 C 1.53007 * 109.46895 * 180.02562 * 3 2 1
5 5 H 1.09006 * 109.46690 * 294.99630 * 4 3 2
6 6 C 1.52995 * 109.47351 * 54.99841 * 4 3 2
7 7 S 1.81397 * 109.46922 * 175.00104 * 4 3 2
8 8 O 1.42097 * 110.54361 * 73.37163 * 7 4 3
9 9 O 1.42095 * 110.54196 * 296.61886 * 7 4 3
10 10 N 1.65601 * 104.44881 * 184.99928 * 7 4 3
11 11 C 1.47579 * 134.49386 * 89.99736 * 10 7 4
12 12 C 1.53950 * 86.11621 * 204.63973 * 11 10 7
13 13 C 1.50698 * 113.74185 * 221.94108 * 12 11 10
14 14 H 1.08004 * 119.99782 * 358.07289 * 13 12 11
15 15 C 1.37878 * 120.00154 * 178.07233 * 13 12 11
16 16 N 1.31517 * 119.99673 * 0.02562 * 15 13 12
17 17 Si 1.86798 * 120.00171 * 179.97438 * 15 13 12
18 18 H 1.48499 * 109.47199 * 90.00222 * 17 15 13
19 19 H 1.48497 * 109.47283 * 210.00257 * 17 15 13
20 20 H 1.48499 * 109.47112 * 330.00381 * 17 15 13
21 21 C 1.47925 * 134.49825 * 269.99735 * 10 7 4
22 22 H 1.08998 * 109.47240 * 180.02562 * 1 2 3
23 23 H 1.08999 * 109.46833 * 299.99920 * 1 2 3
24 24 H 1.08999 * 109.47285 * 59.99929 * 1 2 3
25 25 H 1.08996 * 109.47122 * 60.00649 * 3 2 1
26 26 H 1.09002 * 109.46815 * 299.99620 * 3 2 1
27 27 H 1.09006 * 109.47067 * 299.99959 * 6 4 3
28 28 H 1.08993 * 109.47440 * 59.99872 * 6 4 3
29 29 H 1.08998 * 109.47333 * 180.02562 * 6 4 3
30 30 H 1.09003 * 113.77049 * 90.34038 * 11 10 7
31 31 H 1.08993 * 113.77081 * 318.93800 * 11 10 7
32 32 H 1.09002 * 113.74276 * 90.74001 * 12 11 10
33 33 H 0.96999 * 119.99516 * 179.97438 * 16 15 13
34 34 H 1.09006 * 113.87423 * 41.10252 * 21 10 7
35 35 H 1.08997 * 113.77410 * 269.60424 * 21 10 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1846 -0.0006
5 1 3.8637 0.7228 0.9306
6 6 3.9781 0.3197 -1.1825
7 16 4.2728 2.8353 -0.1497
8 8 4.1368 3.5539 1.0686
9 8 3.9220 3.4276 -1.3927
10 7 5.8993 2.5514 -0.2772
11 6 6.8237 2.3203 -1.4041
12 6 7.7148 1.5859 -0.3861
13 6 9.1829 1.8934 -0.5317
14 1 9.5213 2.5507 -1.3190
15 6 10.0939 1.3358 0.3401
16 7 9.6817 0.5350 1.2985
17 14 11.9137 1.7164 0.1591
18 1 12.2510 2.9166 0.9659
19 1 12.7115 0.5587 0.6368
20 1 12.2253 1.9766 -1.2693
21 6 7.0093 2.4275 0.6928
22 1 -0.3633 -1.0276 0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 1.6887 1.8463 0.8900
26 1 1.6886 1.8463 -0.8900
27 1 3.5351 -0.6722 -1.0929
28 1 3.6499 0.7814 -2.1137
29 1 5.0647 0.2332 -1.1827
30 1 7.2696 3.2325 -1.8007
31 1 6.4170 1.6720 -2.1801
32 1 7.5096 0.5178 -0.3133
33 1 10.3227 0.1424 1.9116
34 1 6.7507 1.8646 1.5897
35 1 7.5096 3.3710 0.9108
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000594827296.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:02:45
Heat of formation + Delta-G solvation = -86.651417 kcal
Electronic energy + Delta-G solvation = -18643.973801 eV
Core-core repulsion = 15577.746447 eV
Total energy + Delta-G solvation = -3066.227353 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-38.28801 -38.03262 -36.76224 -35.62105 -33.80124 -32.59483 -28.34625 -27.49786
-26.01526 -25.12724 -24.45822 -22.17627 -19.68251 -18.23347 -17.43661 -16.72373
-16.61243 -16.31069 -15.72895 -15.52510 -15.01889 -14.57777 -14.07486 -13.70312
-13.04152 -12.90619 -12.74100 -12.58622 -11.91495 -11.82658 -11.71241 -11.67848
-11.59204 -11.51486 -11.34031 -11.10627 -10.99423 -10.56509 -10.43006 -10.20306
-9.93156 -9.27040 -9.04345 -8.58942 -8.17401 -6.14966 -4.19342 0.50155
2.99233 3.26562 3.34175 3.36899 3.56981 4.21269 4.30225 4.36462
4.50063 4.70502 4.96425 5.08871 5.10577 5.17629 5.31160 5.38456
5.42318 5.68338 5.82547 5.88699 6.17249 6.20772 6.31379 6.40310
6.51110 6.71454 6.86338 6.86618 7.50265 7.65194 7.82982 8.22618
8.83311 9.46713 10.94657
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.035750 B = 0.005045 C = 0.004789
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 783.037835 B = 5548.736286 C = 5845.162650
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.377 6.377
3 C 0.079 3.921
4 C -0.598 4.598
5 H 0.141 0.859
6 C -0.130 4.130
7 S 2.625 3.375
8 O -0.963 6.963
9 O -0.963 6.963
10 N -1.039 6.039
11 C 0.127 3.873
12 C 0.035 3.965
13 C -0.518 4.518
14 H 0.063 0.937
15 C 0.067 3.933
16 N -0.887 5.887
17 Si 0.894 3.106
18 H -0.280 1.280
19 H -0.287 1.287
20 H -0.273 1.273
21 C 0.137 3.863
22 H 0.088 0.912
23 H 0.043 0.957
24 H 0.043 0.957
25 H 0.061 0.939
26 H 0.063 0.937
27 H 0.079 0.921
28 H 0.065 0.935
29 H 0.079 0.921
30 H 0.074 0.926
31 H 0.060 0.940
32 H 0.064 0.936
33 H 0.263 0.737
34 H 0.062 0.938
35 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.389 -1.118 -2.589 13.683
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.295 6.295
3 C 0.001 3.999
4 C -0.705 4.705
5 H 0.159 0.841
6 C -0.188 4.188
7 S 2.719 3.281
8 O -0.954 6.954
9 O -0.953 6.953
10 N -0.881 5.881
11 C 0.002 3.998
12 C 0.013 3.987
13 C -0.557 4.557
14 H 0.081 0.919
15 C -0.136 4.136
16 N -0.525 5.525
17 Si 0.722 3.278
18 H -0.206 1.206
19 H -0.212 1.212
20 H -0.197 1.197
21 C 0.012 3.988
22 H 0.107 0.893
23 H 0.061 0.939
24 H 0.062 0.938
25 H 0.079 0.921
26 H 0.081 0.919
27 H 0.098 0.902
28 H 0.084 0.916
29 H 0.098 0.902
30 H 0.093 0.907
31 H 0.078 0.922
32 H 0.082 0.918
33 H 0.073 0.927
34 H 0.080 0.920
35 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -13.918 -0.525 -2.413 14.136
hybrid contribution 0.647 -0.306 0.268 0.765
sum -13.271 -0.832 -2.145 13.469
Atomic orbital electron populations
1.22812 0.80960 1.03016 1.00237 1.87939 1.19595 1.26586 1.95407
1.22139 0.90263 0.86349 1.01182 1.30792 1.04048 1.26051 1.09604
0.84108 1.21471 1.02808 1.00554 0.93998 1.04448 0.73667 0.75978
0.73958 1.93550 1.85822 1.68427 1.47557 1.93529 1.83427 1.73708
1.44658 1.60082 1.19934 1.88372 1.19715 1.23034 0.87618 0.99408
0.89703 1.20638 0.93455 0.95554 0.89010 1.21053 0.90575 1.29138
1.14983 0.91855 1.25016 0.99071 0.94420 0.95088 1.69942 1.34779
1.30737 1.16998 0.86560 0.84819 0.77904 0.78525 1.20576 1.21241
1.19749 1.23264 0.81839 1.00150 0.93514 0.89327 0.93865 0.93806
0.92059 0.91916 0.90189 0.91558 0.90169 0.90730 0.92155 0.91799
0.92694 0.92001 0.90767
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 11.01 101.05 1.11 1.35 16
2 O -0.38 -4.81 9.82 -35.23 -0.35 -5.16 16
3 C 0.08 1.01 5.44 37.16 0.20 1.22 16
4 C -0.60 -8.58 3.38 -26.73 -0.09 -8.67 16
5 H 0.14 1.94 8.14 -51.92 -0.42 1.52 16
6 C -0.13 -1.79 8.88 37.16 0.33 -1.46 16
7 S 2.63 45.98 5.38 -107.50 -0.58 45.41 16
8 O -0.96 -19.37 18.03 -57.54 -1.04 -20.41 16
9 O -0.96 -18.48 18.01 -57.54 -1.04 -19.52 16
10 N -1.04 -19.81 3.50 -118.52 -0.42 -20.23 16
11 C 0.13 2.43 7.99 -2.97 -0.02 2.41 16
12 C 0.03 0.78 3.60 -90.84 -0.33 0.45 16
13 C -0.52 -12.96 8.77 -34.44 -0.30 -13.26 16
14 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16
15 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16
16 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16
17 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16
18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16
19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16
20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16
21 C 0.14 2.92 8.49 -2.77 -0.02 2.90 16
22 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
23 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16
24 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16
25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
27 H 0.08 1.05 7.56 -51.93 -0.39 0.66 16
28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
29 H 0.08 1.14 6.69 -51.93 -0.35 0.79 16
30 H 0.07 1.42 8.09 -51.93 -0.42 0.99 16
31 H 0.06 1.00 7.58 -51.93 -0.39 0.61 16
32 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16
33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16
34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
35 H 0.07 1.62 8.09 -51.93 -0.42 1.20 16
LS Contribution 309.31 15.07 4.66 4.66
Total: -1.00 -30.35 309.31 -7.58 -37.93
By element:
Atomic # 1 Polarization: 4.23 SS G_CDS: -5.32 Total: -1.10 kcal
Atomic # 6 Polarization: -14.22 SS G_CDS: 0.78 Total: -13.44 kcal
Atomic # 7 Polarization: -43.68 SS G_CDS: 0.32 Total: -43.36 kcal
Atomic # 8 Polarization: -42.67 SS G_CDS: -2.42 Total: -45.09 kcal
Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal
Atomic # 16 Polarization: 45.98 SS G_CDS: -0.58 Total: 45.41 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -30.35 -7.58 -37.93 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594827296.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.726 kcal
(2) G-P(sol) polarization free energy of solvation -30.347 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.072 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.651 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds