Wall clock time and date at job start Mon Mar 30 2020 05:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99990 * 2 1 4 4 C 1.53007 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46690 * 294.99630 * 4 3 2 6 6 C 1.52995 * 109.47351 * 54.99841 * 4 3 2 7 7 S 1.81397 * 109.46922 * 175.00104 * 4 3 2 8 8 O 1.42097 * 110.54361 * 73.37163 * 7 4 3 9 9 O 1.42095 * 110.54196 * 296.61886 * 7 4 3 10 10 N 1.65601 * 104.44881 * 184.99928 * 7 4 3 11 11 C 1.47579 * 134.49386 * 89.99736 * 10 7 4 12 12 C 1.53950 * 86.11621 * 204.63973 * 11 10 7 13 13 C 1.50698 * 113.74185 * 221.94108 * 12 11 10 14 14 H 1.08004 * 119.99782 * 358.07289 * 13 12 11 15 15 C 1.37878 * 120.00154 * 178.07233 * 13 12 11 16 16 N 1.31517 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00171 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47199 * 90.00222 * 17 15 13 19 19 H 1.48497 * 109.47283 * 210.00257 * 17 15 13 20 20 H 1.48499 * 109.47112 * 330.00381 * 17 15 13 21 21 C 1.47925 * 134.49825 * 269.99735 * 10 7 4 22 22 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46833 * 299.99920 * 1 2 3 24 24 H 1.08999 * 109.47285 * 59.99929 * 1 2 3 25 25 H 1.08996 * 109.47122 * 60.00649 * 3 2 1 26 26 H 1.09002 * 109.46815 * 299.99620 * 3 2 1 27 27 H 1.09006 * 109.47067 * 299.99959 * 6 4 3 28 28 H 1.08993 * 109.47440 * 59.99872 * 6 4 3 29 29 H 1.08998 * 109.47333 * 180.02562 * 6 4 3 30 30 H 1.09003 * 113.77049 * 90.34038 * 11 10 7 31 31 H 1.08993 * 113.77081 * 318.93800 * 11 10 7 32 32 H 1.09002 * 113.74276 * 90.74001 * 12 11 10 33 33 H 0.96999 * 119.99516 * 179.97438 * 16 15 13 34 34 H 1.09006 * 113.87423 * 41.10252 * 21 10 7 35 35 H 1.08997 * 113.77410 * 269.60424 * 21 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8637 0.7228 0.9306 6 6 3.9781 0.3197 -1.1825 7 16 4.2728 2.8353 -0.1497 8 8 4.1368 3.5539 1.0686 9 8 3.9220 3.4276 -1.3927 10 7 5.8993 2.5514 -0.2772 11 6 6.8237 2.3203 -1.4041 12 6 7.7148 1.5859 -0.3861 13 6 9.1829 1.8934 -0.5317 14 1 9.5213 2.5507 -1.3190 15 6 10.0939 1.3358 0.3401 16 7 9.6817 0.5350 1.2985 17 14 11.9137 1.7164 0.1591 18 1 12.2510 2.9166 0.9659 19 1 12.7115 0.5587 0.6368 20 1 12.2253 1.9766 -1.2693 21 6 7.0093 2.4275 0.6928 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 3.5351 -0.6722 -1.0929 28 1 3.6499 0.7814 -2.1137 29 1 5.0647 0.2332 -1.1827 30 1 7.2696 3.2325 -1.8007 31 1 6.4170 1.6720 -2.1801 32 1 7.5096 0.5178 -0.3133 33 1 10.3227 0.1424 1.9116 34 1 6.7507 1.8646 1.5897 35 1 7.5096 3.3710 0.9108 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594827296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:45 Heat of formation + Delta-G solvation = -86.651417 kcal Electronic energy + Delta-G solvation = -18643.973801 eV Core-core repulsion = 15577.746447 eV Total energy + Delta-G solvation = -3066.227353 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.28801 -38.03262 -36.76224 -35.62105 -33.80124 -32.59483 -28.34625 -27.49786 -26.01526 -25.12724 -24.45822 -22.17627 -19.68251 -18.23347 -17.43661 -16.72373 -16.61243 -16.31069 -15.72895 -15.52510 -15.01889 -14.57777 -14.07486 -13.70312 -13.04152 -12.90619 -12.74100 -12.58622 -11.91495 -11.82658 -11.71241 -11.67848 -11.59204 -11.51486 -11.34031 -11.10627 -10.99423 -10.56509 -10.43006 -10.20306 -9.93156 -9.27040 -9.04345 -8.58942 -8.17401 -6.14966 -4.19342 0.50155 2.99233 3.26562 3.34175 3.36899 3.56981 4.21269 4.30225 4.36462 4.50063 4.70502 4.96425 5.08871 5.10577 5.17629 5.31160 5.38456 5.42318 5.68338 5.82547 5.88699 6.17249 6.20772 6.31379 6.40310 6.51110 6.71454 6.86338 6.86618 7.50265 7.65194 7.82982 8.22618 8.83311 9.46713 10.94657 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.005045 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.037835 B = 5548.736286 C = 5845.162650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.377 6.377 3 C 0.079 3.921 4 C -0.598 4.598 5 H 0.141 0.859 6 C -0.130 4.130 7 S 2.625 3.375 8 O -0.963 6.963 9 O -0.963 6.963 10 N -1.039 6.039 11 C 0.127 3.873 12 C 0.035 3.965 13 C -0.518 4.518 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.137 3.863 22 H 0.088 0.912 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.263 0.737 34 H 0.062 0.938 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.389 -1.118 -2.589 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.295 6.295 3 C 0.001 3.999 4 C -0.705 4.705 5 H 0.159 0.841 6 C -0.188 4.188 7 S 2.719 3.281 8 O -0.954 6.954 9 O -0.953 6.953 10 N -0.881 5.881 11 C 0.002 3.998 12 C 0.013 3.987 13 C -0.557 4.557 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.012 3.988 22 H 0.107 0.893 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.918 -0.525 -2.413 14.136 hybrid contribution 0.647 -0.306 0.268 0.765 sum -13.271 -0.832 -2.145 13.469 Atomic orbital electron populations 1.22812 0.80960 1.03016 1.00237 1.87939 1.19595 1.26586 1.95407 1.22139 0.90263 0.86349 1.01182 1.30792 1.04048 1.26051 1.09604 0.84108 1.21471 1.02808 1.00554 0.93998 1.04448 0.73667 0.75978 0.73958 1.93550 1.85822 1.68427 1.47557 1.93529 1.83427 1.73708 1.44658 1.60082 1.19934 1.88372 1.19715 1.23034 0.87618 0.99408 0.89703 1.20638 0.93455 0.95554 0.89010 1.21053 0.90575 1.29138 1.14983 0.91855 1.25016 0.99071 0.94420 0.95088 1.69942 1.34779 1.30737 1.16998 0.86560 0.84819 0.77904 0.78525 1.20576 1.21241 1.19749 1.23264 0.81839 1.00150 0.93514 0.89327 0.93865 0.93806 0.92059 0.91916 0.90189 0.91558 0.90169 0.90730 0.92155 0.91799 0.92694 0.92001 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.81 9.82 -35.23 -0.35 -5.16 16 3 C 0.08 1.01 5.44 37.16 0.20 1.22 16 4 C -0.60 -8.58 3.38 -26.73 -0.09 -8.67 16 5 H 0.14 1.94 8.14 -51.92 -0.42 1.52 16 6 C -0.13 -1.79 8.88 37.16 0.33 -1.46 16 7 S 2.63 45.98 5.38 -107.50 -0.58 45.41 16 8 O -0.96 -19.37 18.03 -57.54 -1.04 -20.41 16 9 O -0.96 -18.48 18.01 -57.54 -1.04 -19.52 16 10 N -1.04 -19.81 3.50 -118.52 -0.42 -20.23 16 11 C 0.13 2.43 7.99 -2.97 -0.02 2.41 16 12 C 0.03 0.78 3.60 -90.84 -0.33 0.45 16 13 C -0.52 -12.96 8.77 -34.44 -0.30 -13.26 16 14 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 17 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C 0.14 2.92 8.49 -2.77 -0.02 2.90 16 22 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.05 7.56 -51.93 -0.39 0.66 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.14 6.69 -51.93 -0.35 0.79 16 30 H 0.07 1.42 8.09 -51.93 -0.42 0.99 16 31 H 0.06 1.00 7.58 -51.93 -0.39 0.61 16 32 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.62 8.09 -51.93 -0.42 1.20 16 LS Contribution 309.31 15.07 4.66 4.66 Total: -1.00 -30.35 309.31 -7.58 -37.93 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.32 Total: -1.10 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 0.78 Total: -13.44 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.32 Total: -43.36 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -2.42 Total: -45.09 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 45.98 SS G_CDS: -0.58 Total: 45.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.35 -7.58 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.726 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds