Wall clock time and date at job start Mon Mar 30 2020 05:02:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42900 * 113.99990 * 2 1
4 4 C 1.53007 * 109.46895 * 180.02562 * 3 2 1
5 5 H 1.09006 * 109.46690 * 294.99630 * 4 3 2
6 6 C 1.52995 * 109.47351 * 54.99841 * 4 3 2
7 7 S 1.81397 * 109.46922 * 175.00104 * 4 3 2
8 8 O 1.42097 * 110.54361 * 73.37163 * 7 4 3
9 9 O 1.42095 * 110.54196 * 296.61886 * 7 4 3
10 10 N 1.65601 * 104.44881 * 184.99928 * 7 4 3
11 11 C 1.47579 * 134.49386 * 89.99736 * 10 7 4
12 12 C 1.53950 * 86.11621 * 204.63973 * 11 10 7
13 13 C 1.50698 * 113.74185 * 221.94108 * 12 11 10
14 14 H 1.08004 * 119.99782 * 358.07289 * 13 12 11
15 15 C 1.37878 * 120.00154 * 178.07233 * 13 12 11
16 16 N 1.31517 * 119.99673 * 0.02562 * 15 13 12
17 17 Si 1.86798 * 120.00171 * 179.97438 * 15 13 12
18 18 H 1.48499 * 109.47199 * 90.00222 * 17 15 13
19 19 H 1.48497 * 109.47283 * 210.00257 * 17 15 13
20 20 H 1.48499 * 109.47112 * 330.00381 * 17 15 13
21 21 C 1.47925 * 134.49825 * 269.99735 * 10 7 4
22 22 H 1.08998 * 109.47240 * 180.02562 * 1 2 3
23 23 H 1.08999 * 109.46833 * 299.99920 * 1 2 3
24 24 H 1.08999 * 109.47285 * 59.99929 * 1 2 3
25 25 H 1.08996 * 109.47122 * 60.00649 * 3 2 1
26 26 H 1.09002 * 109.46815 * 299.99620 * 3 2 1
27 27 H 1.09006 * 109.47067 * 299.99959 * 6 4 3
28 28 H 1.08993 * 109.47440 * 59.99872 * 6 4 3
29 29 H 1.08998 * 109.47333 * 180.02562 * 6 4 3
30 30 H 1.09003 * 113.77049 * 90.34038 * 11 10 7
31 31 H 1.08993 * 113.77081 * 318.93800 * 11 10 7
32 32 H 1.09002 * 113.74276 * 90.74001 * 12 11 10
33 33 H 0.96999 * 119.99516 * 179.97438 * 16 15 13
34 34 H 1.09006 * 113.87423 * 41.10252 * 21 10 7
35 35 H 1.08997 * 113.77410 * 269.60424 * 21 10 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1846 -0.0006
5 1 3.8637 0.7228 0.9306
6 6 3.9781 0.3197 -1.1825
7 16 4.2728 2.8353 -0.1497
8 8 4.1368 3.5539 1.0686
9 8 3.9220 3.4276 -1.3927
10 7 5.8993 2.5514 -0.2772
11 6 6.8237 2.3203 -1.4041
12 6 7.7148 1.5859 -0.3861
13 6 9.1829 1.8934 -0.5317
14 1 9.5213 2.5507 -1.3190
15 6 10.0939 1.3358 0.3401
16 7 9.6817 0.5350 1.2985
17 14 11.9137 1.7164 0.1591
18 1 12.2510 2.9166 0.9659
19 1 12.7115 0.5587 0.6368
20 1 12.2253 1.9766 -1.2693
21 6 7.0093 2.4275 0.6928
22 1 -0.3633 -1.0276 0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 1.6887 1.8463 0.8900
26 1 1.6886 1.8463 -0.8900
27 1 3.5351 -0.6722 -1.0929
28 1 3.6499 0.7814 -2.1137
29 1 5.0647 0.2332 -1.1827
30 1 7.2696 3.2325 -1.8007
31 1 6.4170 1.6720 -2.1801
32 1 7.5096 0.5178 -0.3133
33 1 10.3227 0.1424 1.9116
34 1 6.7507 1.8646 1.5897
35 1 7.5096 3.3710 0.9108
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000594827296.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:02:44
Heat of formation + Delta-G solvation = -108.466256 kcal
Electronic energy + Delta-G solvation = -18644.919763 eV
Core-core repulsion = 15577.746447 eV
Total energy + Delta-G solvation = -3067.173316 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.67575 -39.20372 -38.25500 -37.12007 -34.89344 -34.50959 -30.03830 -28.43578
-26.95965 -26.69009 -26.26546 -23.33621 -21.36400 -19.69077 -18.90940 -18.23124
-18.07153 -17.39768 -16.92135 -16.79306 -16.40429 -16.05475 -15.64730 -14.87321
-14.56281 -14.43774 -13.88713 -13.62522 -13.46309 -13.34488 -13.21899 -13.17512
-13.07427 -12.80605 -12.76816 -12.53269 -12.28602 -12.19269 -12.11268 -11.56331
-10.99403 -10.86202 -10.78237 -10.50004 -9.77726 -8.10138 -6.19034 -0.89481
1.49085 1.51488 1.56113 1.60844 2.49015 2.54362 2.94151 2.97536
3.22450 3.43572 3.53588 3.99443 4.07173 4.23261 4.28238 4.48901
4.50846 4.52633 4.65744 4.71911 4.78635 4.82029 4.83122 4.88228
5.04317 5.14453 5.22606 5.68758 5.90445 5.96148 6.03182 6.35156
6.89287 7.49749 8.99271
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.035750 B = 0.005045 C = 0.004789
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 783.037835 B = 5548.736286 C = 5845.162650
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.395 6.395
3 C 0.072 3.928
4 C -0.578 4.578
5 H 0.148 0.852
6 C -0.132 4.132
7 S 2.634 3.366
8 O -0.993 6.993
9 O -0.979 6.979
10 N -1.041 6.041
11 C 0.134 3.866
12 C 0.024 3.976
13 C -0.529 4.529
14 H 0.064 0.936
15 C 0.021 3.979
16 N -0.919 5.919
17 Si 0.952 3.048
18 H -0.280 1.280
19 H -0.288 1.288
20 H -0.266 1.266
21 C 0.138 3.862
22 H 0.104 0.896
23 H 0.053 0.947
24 H 0.055 0.945
25 H 0.074 0.926
26 H 0.074 0.926
27 H 0.090 0.910
28 H 0.075 0.925
29 H 0.073 0.927
30 H 0.075 0.925
31 H 0.088 0.912
32 H 0.050 0.950
33 H 0.262 0.738
34 H 0.059 0.941
35 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.400 -1.436 -3.326 14.849
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 O -0.314 6.314
3 C -0.007 4.007
4 C -0.689 4.689
5 H 0.166 0.834
6 C -0.190 4.190
7 S 2.733 3.267
8 O -0.983 6.983
9 O -0.970 6.970
10 N -0.881 5.881
11 C 0.009 3.991
12 C 0.003 3.997
13 C -0.568 4.568
14 H 0.082 0.918
15 C -0.179 4.179
16 N -0.557 5.557
17 Si 0.778 3.222
18 H -0.206 1.206
19 H -0.214 1.214
20 H -0.190 1.190
21 C 0.013 3.987
22 H 0.122 0.878
23 H 0.072 0.928
24 H 0.074 0.926
25 H 0.092 0.908
26 H 0.092 0.908
27 H 0.109 0.891
28 H 0.094 0.906
29 H 0.092 0.908
30 H 0.093 0.907
31 H 0.106 0.894
32 H 0.068 0.932
33 H 0.071 0.929
34 H 0.077 0.923
35 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -14.911 -0.799 -3.172 15.266
hybrid contribution 0.826 -0.254 0.478 0.987
sum -14.085 -1.053 -2.694 14.379
Atomic orbital electron populations
1.23080 0.78961 1.04507 1.01376 1.87895 1.21756 1.26154 1.95620
1.22234 0.88863 0.87069 1.02525 1.30496 1.05413 1.22522 1.10449
0.83415 1.21532 1.02492 1.01000 0.94004 1.04092 0.72829 0.76874
0.72924 1.93512 1.85909 1.70417 1.48499 1.93504 1.83247 1.75114
1.45117 1.59961 1.20459 1.88844 1.18866 1.22970 0.86998 0.99378
0.89744 1.20586 0.92916 0.95122 0.91057 1.21429 0.92180 1.28594
1.14635 0.91751 1.25696 1.02712 0.94513 0.94996 1.70041 1.35803
1.32002 1.17890 0.85653 0.80512 0.77415 0.78624 1.20558 1.21353
1.19016 1.22994 0.82863 0.99342 0.93510 0.87756 0.92794 0.92626
0.90788 0.90757 0.89137 0.90635 0.90815 0.90667 0.89415 0.93223
0.92859 0.92281 0.91861
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.25 11.01 113.37 1.25 1.50 16
2 O -0.40 -9.05 9.82 -148.98 -1.46 -10.51 16
3 C 0.07 1.66 5.44 71.98 0.39 2.05 16
4 C -0.58 -15.47 3.38 30.60 0.10 -15.37 16
5 H 0.15 3.82 8.14 -2.39 -0.02 3.80 16
6 C -0.13 -3.35 8.88 71.98 0.64 -2.71 16
7 S 2.63 89.44 5.38 -56.49 -0.30 89.14 16
8 O -0.99 -39.43 18.03 -127.65 -2.30 -41.73 16
9 O -0.98 -36.19 18.01 -127.65 -2.30 -38.49 16
10 N -1.04 -39.07 3.50 -528.90 -1.85 -40.93 16
11 C 0.13 4.99 7.99 86.49 0.69 5.68 16
12 C 0.02 1.09 3.60 -10.88 -0.04 1.05 16
13 C -0.53 -26.48 8.77 25.60 0.22 -26.25 16
14 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16
15 C 0.02 1.07 5.46 84.65 0.46 1.53 16
16 N -0.92 -49.92 13.29 21.45 0.28 -49.63 16
17 Si 0.95 41.01 29.54 68.60 2.03 43.04 16
18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16
19 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16
20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16
21 C 0.14 5.96 8.49 86.42 0.73 6.69 16
22 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
23 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
27 H 0.09 2.15 7.56 -2.38 -0.02 2.13 16
28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16
29 H 0.07 1.97 6.69 -2.39 -0.02 1.95 16
30 H 0.08 2.78 8.09 -2.39 -0.02 2.77 16
31 H 0.09 2.77 7.58 -2.39 -0.02 2.75 16
32 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16
33 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16
34 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16
35 H 0.06 2.82 8.09 -2.39 -0.02 2.80 16
Total: -1.00 -63.36 309.31 -0.39 -63.76
By element:
Atomic # 1 Polarization: 10.12 SS G_CDS: 1.06 Total: 11.18 kcal
Atomic # 6 Polarization: -30.28 SS G_CDS: 4.45 Total: -25.82 kcal
Atomic # 7 Polarization: -88.99 SS G_CDS: -1.57 Total: -90.56 kcal
Atomic # 8 Polarization: -84.67 SS G_CDS: -6.06 Total: -90.73 kcal
Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal
Atomic # 16 Polarization: 89.44 SS G_CDS: -0.30 Total: 89.14 kcal
Total: -63.36 -0.39 -63.76 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594827296.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.711 kcal
(2) G-P(sol) polarization free energy of solvation -63.363 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.073 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.755 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.466 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds