Wall clock time and date at job start Mon Mar 30 2020 05:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99990 * 2 1 4 4 C 1.53007 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46690 * 294.99630 * 4 3 2 6 6 C 1.52995 * 109.47351 * 54.99841 * 4 3 2 7 7 S 1.81397 * 109.46922 * 175.00104 * 4 3 2 8 8 O 1.42097 * 110.54361 * 73.37163 * 7 4 3 9 9 O 1.42095 * 110.54196 * 296.61886 * 7 4 3 10 10 N 1.65601 * 104.44881 * 184.99928 * 7 4 3 11 11 C 1.47579 * 134.49386 * 89.99736 * 10 7 4 12 12 C 1.53950 * 86.11621 * 204.63973 * 11 10 7 13 13 C 1.50698 * 113.74185 * 221.94108 * 12 11 10 14 14 H 1.08004 * 119.99782 * 358.07289 * 13 12 11 15 15 C 1.37878 * 120.00154 * 178.07233 * 13 12 11 16 16 N 1.31517 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00171 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47199 * 90.00222 * 17 15 13 19 19 H 1.48497 * 109.47283 * 210.00257 * 17 15 13 20 20 H 1.48499 * 109.47112 * 330.00381 * 17 15 13 21 21 C 1.47925 * 134.49825 * 269.99735 * 10 7 4 22 22 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46833 * 299.99920 * 1 2 3 24 24 H 1.08999 * 109.47285 * 59.99929 * 1 2 3 25 25 H 1.08996 * 109.47122 * 60.00649 * 3 2 1 26 26 H 1.09002 * 109.46815 * 299.99620 * 3 2 1 27 27 H 1.09006 * 109.47067 * 299.99959 * 6 4 3 28 28 H 1.08993 * 109.47440 * 59.99872 * 6 4 3 29 29 H 1.08998 * 109.47333 * 180.02562 * 6 4 3 30 30 H 1.09003 * 113.77049 * 90.34038 * 11 10 7 31 31 H 1.08993 * 113.77081 * 318.93800 * 11 10 7 32 32 H 1.09002 * 113.74276 * 90.74001 * 12 11 10 33 33 H 0.96999 * 119.99516 * 179.97438 * 16 15 13 34 34 H 1.09006 * 113.87423 * 41.10252 * 21 10 7 35 35 H 1.08997 * 113.77410 * 269.60424 * 21 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8637 0.7228 0.9306 6 6 3.9781 0.3197 -1.1825 7 16 4.2728 2.8353 -0.1497 8 8 4.1368 3.5539 1.0686 9 8 3.9220 3.4276 -1.3927 10 7 5.8993 2.5514 -0.2772 11 6 6.8237 2.3203 -1.4041 12 6 7.7148 1.5859 -0.3861 13 6 9.1829 1.8934 -0.5317 14 1 9.5213 2.5507 -1.3190 15 6 10.0939 1.3358 0.3401 16 7 9.6817 0.5350 1.2985 17 14 11.9137 1.7164 0.1591 18 1 12.2510 2.9166 0.9659 19 1 12.7115 0.5587 0.6368 20 1 12.2253 1.9766 -1.2693 21 6 7.0093 2.4275 0.6928 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 3.5351 -0.6722 -1.0929 28 1 3.6499 0.7814 -2.1137 29 1 5.0647 0.2332 -1.1827 30 1 7.2696 3.2325 -1.8007 31 1 6.4170 1.6720 -2.1801 32 1 7.5096 0.5178 -0.3133 33 1 10.3227 0.1424 1.9116 34 1 6.7507 1.8646 1.5897 35 1 7.5096 3.3710 0.9108 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594827296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:44 Heat of formation + Delta-G solvation = -108.466256 kcal Electronic energy + Delta-G solvation = -18644.919763 eV Core-core repulsion = 15577.746447 eV Total energy + Delta-G solvation = -3067.173316 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67575 -39.20372 -38.25500 -37.12007 -34.89344 -34.50959 -30.03830 -28.43578 -26.95965 -26.69009 -26.26546 -23.33621 -21.36400 -19.69077 -18.90940 -18.23124 -18.07153 -17.39768 -16.92135 -16.79306 -16.40429 -16.05475 -15.64730 -14.87321 -14.56281 -14.43774 -13.88713 -13.62522 -13.46309 -13.34488 -13.21899 -13.17512 -13.07427 -12.80605 -12.76816 -12.53269 -12.28602 -12.19269 -12.11268 -11.56331 -10.99403 -10.86202 -10.78237 -10.50004 -9.77726 -8.10138 -6.19034 -0.89481 1.49085 1.51488 1.56113 1.60844 2.49015 2.54362 2.94151 2.97536 3.22450 3.43572 3.53588 3.99443 4.07173 4.23261 4.28238 4.48901 4.50846 4.52633 4.65744 4.71911 4.78635 4.82029 4.83122 4.88228 5.04317 5.14453 5.22606 5.68758 5.90445 5.96148 6.03182 6.35156 6.89287 7.49749 8.99271 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.005045 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.037835 B = 5548.736286 C = 5845.162650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.395 6.395 3 C 0.072 3.928 4 C -0.578 4.578 5 H 0.148 0.852 6 C -0.132 4.132 7 S 2.634 3.366 8 O -0.993 6.993 9 O -0.979 6.979 10 N -1.041 6.041 11 C 0.134 3.866 12 C 0.024 3.976 13 C -0.529 4.529 14 H 0.064 0.936 15 C 0.021 3.979 16 N -0.919 5.919 17 Si 0.952 3.048 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.138 3.862 22 H 0.104 0.896 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.262 0.738 34 H 0.059 0.941 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.400 -1.436 -3.326 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.314 6.314 3 C -0.007 4.007 4 C -0.689 4.689 5 H 0.166 0.834 6 C -0.190 4.190 7 S 2.733 3.267 8 O -0.983 6.983 9 O -0.970 6.970 10 N -0.881 5.881 11 C 0.009 3.991 12 C 0.003 3.997 13 C -0.568 4.568 14 H 0.082 0.918 15 C -0.179 4.179 16 N -0.557 5.557 17 Si 0.778 3.222 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.190 1.190 21 C 0.013 3.987 22 H 0.122 0.878 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.911 -0.799 -3.172 15.266 hybrid contribution 0.826 -0.254 0.478 0.987 sum -14.085 -1.053 -2.694 14.379 Atomic orbital electron populations 1.23080 0.78961 1.04507 1.01376 1.87895 1.21756 1.26154 1.95620 1.22234 0.88863 0.87069 1.02525 1.30496 1.05413 1.22522 1.10449 0.83415 1.21532 1.02492 1.01000 0.94004 1.04092 0.72829 0.76874 0.72924 1.93512 1.85909 1.70417 1.48499 1.93504 1.83247 1.75114 1.45117 1.59961 1.20459 1.88844 1.18866 1.22970 0.86998 0.99378 0.89744 1.20586 0.92916 0.95122 0.91057 1.21429 0.92180 1.28594 1.14635 0.91751 1.25696 1.02712 0.94513 0.94996 1.70041 1.35803 1.32002 1.17890 0.85653 0.80512 0.77415 0.78624 1.20558 1.21353 1.19016 1.22994 0.82863 0.99342 0.93510 0.87756 0.92794 0.92626 0.90788 0.90757 0.89137 0.90635 0.90815 0.90667 0.89415 0.93223 0.92859 0.92281 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -9.05 9.82 -148.98 -1.46 -10.51 16 3 C 0.07 1.66 5.44 71.98 0.39 2.05 16 4 C -0.58 -15.47 3.38 30.60 0.10 -15.37 16 5 H 0.15 3.82 8.14 -2.39 -0.02 3.80 16 6 C -0.13 -3.35 8.88 71.98 0.64 -2.71 16 7 S 2.63 89.44 5.38 -56.49 -0.30 89.14 16 8 O -0.99 -39.43 18.03 -127.65 -2.30 -41.73 16 9 O -0.98 -36.19 18.01 -127.65 -2.30 -38.49 16 10 N -1.04 -39.07 3.50 -528.90 -1.85 -40.93 16 11 C 0.13 4.99 7.99 86.49 0.69 5.68 16 12 C 0.02 1.09 3.60 -10.88 -0.04 1.05 16 13 C -0.53 -26.48 8.77 25.60 0.22 -26.25 16 14 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 15 C 0.02 1.07 5.46 84.65 0.46 1.53 16 16 N -0.92 -49.92 13.29 21.45 0.28 -49.63 16 17 Si 0.95 41.01 29.54 68.60 2.03 43.04 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 C 0.14 5.96 8.49 86.42 0.73 6.69 16 22 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 2.15 7.56 -2.38 -0.02 2.13 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.97 6.69 -2.39 -0.02 1.95 16 30 H 0.08 2.78 8.09 -2.39 -0.02 2.77 16 31 H 0.09 2.77 7.58 -2.39 -0.02 2.75 16 32 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 34 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.06 2.82 8.09 -2.39 -0.02 2.80 16 Total: -1.00 -63.36 309.31 -0.39 -63.76 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.06 Total: 11.18 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 4.45 Total: -25.82 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -1.57 Total: -90.56 kcal Atomic # 8 Polarization: -84.67 SS G_CDS: -6.06 Total: -90.73 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 89.44 SS G_CDS: -0.30 Total: 89.14 kcal Total: -63.36 -0.39 -63.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.711 kcal (2) G-P(sol) polarization free energy of solvation -63.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds