Wall clock time and date at job start Mon Mar 30 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40082 * 126.03882 * 2 1 4 4 C 1.30843 * 108.20675 * 179.74052 * 3 2 1 5 5 C 1.39865 * 108.19782 * 0.43878 * 4 3 2 6 6 C 1.50703 * 126.03744 * 179.81653 * 5 4 3 7 7 F 1.39905 * 109.47157 * 359.69324 * 6 5 4 8 8 F 1.39900 * 109.47159 * 239.69625 * 6 5 4 9 9 F 1.39897 * 109.47274 * 119.69316 * 6 5 4 10 10 C 1.34946 * 126.03769 * 180.02562 * 2 1 3 11 11 C 1.50699 * 126.12759 * 359.95773 * 10 2 1 12 12 N 1.46903 * 109.47168 * 90.01957 * 11 10 2 13 13 C 1.46897 * 111.00074 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99924 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00008 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99830 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00110 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47309 * 89.99679 * 18 16 14 20 20 H 1.48497 * 109.46956 * 209.99907 * 18 16 14 21 21 H 1.48509 * 109.46854 * 329.99631 * 18 16 14 22 22 H 1.08995 * 109.47108 * 269.97640 * 1 2 3 23 23 H 1.09003 * 109.47052 * 29.97176 * 1 2 3 24 24 H 1.08995 * 109.47516 * 149.97096 * 1 2 3 25 25 H 1.08000 * 125.89749 * 180.26139 * 4 3 2 26 26 H 1.08992 * 109.47490 * 210.02399 * 11 10 2 27 27 H 1.09002 * 109.46926 * 330.02921 * 11 10 2 28 28 H 1.00895 * 111.00640 * 303.96358 * 12 11 10 29 29 H 1.08997 * 109.47814 * 300.00628 * 13 12 11 30 30 H 1.09002 * 109.46907 * 60.00934 * 13 12 11 31 31 H 0.96998 * 119.99653 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7321 0.0056 5 6 3.5437 -0.6665 -0.0008 6 6 4.7680 -1.5453 -0.0014 7 9 5.9160 -0.7457 -0.0016 8 9 4.7619 -2.3527 -1.1439 9 9 4.7626 -2.3533 1.1406 10 6 2.2589 -1.0912 -0.0005 11 6 1.7974 -2.5258 -0.0002 12 7 1.6470 -2.9921 -1.3852 13 6 1.1978 -4.3901 -1.4241 14 6 1.0558 -4.8324 -2.8578 15 1 1.2775 -4.1439 -3.6597 16 6 0.6429 -6.1160 -3.1456 17 7 0.5185 -6.5018 -4.3967 18 14 0.2587 -7.3067 -1.7584 19 1 -1.1758 -7.1933 -1.3917 20 1 0.5479 -8.6939 -2.2025 21 1 1.0988 -6.9795 -0.5783 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8903 -0.5134 24 1 -0.3634 -0.8897 -0.5142 25 1 4.4054 1.3710 0.0111 26 1 2.5333 -3.1442 0.5135 27 1 0.8389 -2.5990 0.5137 28 1 1.0182 -2.3954 -1.9014 29 1 1.9299 -5.0212 -0.9204 30 1 0.2353 -4.4767 -0.9199 31 1 0.2276 -7.4047 -4.5991 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597116094.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:46 Heat of formation + Delta-G solvation = -70.234729 kcal Electronic energy + Delta-G solvation = -20189.976805 eV Core-core repulsion = 16479.453392 eV Total energy + Delta-G solvation = -3710.523413 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.74571 -47.35208 -47.11648 -41.54029 -35.89889 -33.62985 -32.68922 -31.21812 -28.35675 -27.32874 -25.09531 -24.15172 -21.37917 -21.21304 -20.17140 -18.10625 -18.05599 -17.68011 -16.83509 -15.99356 -15.70790 -15.24391 -14.57488 -14.22598 -14.14549 -14.03579 -13.84662 -13.67140 -13.35584 -13.33458 -13.02515 -12.89901 -12.83220 -12.56462 -12.28161 -11.78580 -11.76537 -10.93180 -10.78367 -10.60018 -9.94289 -9.53201 -9.40057 -8.97077 -8.67822 -7.76689 -6.12763 -4.12106 1.53435 2.16933 2.33776 3.12425 3.22137 3.31379 3.32527 4.04552 4.23966 4.34855 4.38727 4.63700 4.80408 4.86050 4.94884 5.01485 5.17591 5.22374 5.25513 5.46271 5.64582 5.84863 6.24106 6.55376 6.66506 6.81819 7.38263 7.41693 7.67249 8.03123 8.52271 8.94980 9.47464 11.00308 Molecular weight = 263.09amu Principal moments of inertia in cm(-1) A = 0.022042 B = 0.006092 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.017132 B = 4595.224308 C = 5272.458437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.362 5.362 3 N -0.291 5.291 4 C 0.093 3.907 5 C -0.329 4.329 6 C 0.544 3.456 7 F -0.185 7.185 8 F -0.160 7.160 9 F -0.185 7.185 10 C 0.170 3.830 11 C 0.102 3.898 12 N -0.664 5.664 13 C 0.166 3.834 14 C -0.519 4.519 15 H 0.080 0.920 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.266 1.266 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.194 0.806 26 H 0.099 0.901 27 H 0.043 0.957 28 H 0.336 0.664 29 H 0.032 0.968 30 H -0.017 1.017 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.909 12.566 11.931 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.142 5.142 3 N -0.110 5.110 4 C -0.094 4.094 5 C -0.343 4.343 6 C 0.489 3.511 7 F -0.166 7.166 8 F -0.141 7.141 9 F -0.166 7.166 10 C 0.038 3.962 11 C -0.029 4.029 12 N -0.296 5.296 13 C 0.039 3.961 14 C -0.557 4.557 15 H 0.098 0.902 16 C -0.132 4.132 17 N -0.535 5.535 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.190 1.190 22 H 0.098 0.902 23 H 0.115 0.885 24 H 0.111 0.889 25 H 0.211 0.789 26 H 0.117 0.883 27 H 0.061 0.939 28 H 0.153 0.847 29 H 0.050 0.950 30 H 0.000 1.000 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.559 13.247 11.738 17.883 hybrid contribution -0.461 -1.409 0.874 1.721 sum 2.099 11.838 12.612 17.424 Atomic orbital electron populations 1.22011 0.73340 1.05341 1.03827 1.48538 1.07032 1.03144 1.55476 1.77437 1.00972 1.07595 1.25017 1.23638 0.95837 0.92670 0.97285 1.19787 0.92542 0.94757 1.27240 1.17238 0.81727 0.78101 0.74040 1.93127 1.53195 1.73931 1.96364 1.93328 1.96505 1.74190 1.50058 1.93165 1.96674 1.75045 1.51729 1.20932 0.89830 0.91170 0.94232 1.20807 1.00756 0.86789 0.94545 1.60547 1.55727 1.05650 1.07631 1.20071 0.93011 0.84236 0.98760 1.20975 1.45391 0.98623 0.90689 0.90153 1.24887 0.94969 0.97884 0.95420 1.69890 1.47151 1.18874 1.17599 0.86841 0.78902 0.80895 0.82970 1.20345 1.20994 1.19043 0.90212 0.88548 0.88888 0.78941 0.88291 0.93912 0.84658 0.94972 0.99973 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 11.09 59.85 0.66 1.55 16 2 N -0.36 -4.81 4.01 -63.89 -0.26 -5.06 16 3 N -0.29 -4.06 12.58 30.62 0.39 -3.67 16 4 C 0.09 1.22 11.45 -17.36 -0.20 1.02 16 5 C -0.33 -4.88 5.52 -105.05 -0.58 -5.45 16 6 C 0.54 8.31 3.11 36.01 0.11 8.42 16 7 F -0.18 -2.56 16.82 2.25 0.04 -2.52 16 8 F -0.16 -2.87 17.30 2.25 0.04 -2.84 16 9 F -0.18 -2.81 16.44 2.25 0.04 -2.77 16 10 C 0.17 2.51 6.44 -82.27 -0.53 1.98 16 11 C 0.10 1.60 5.48 -4.98 -0.03 1.57 16 12 N -0.66 -12.90 6.48 -116.34 -0.75 -13.65 16 13 C 0.17 3.81 4.51 -4.98 -0.02 3.79 16 14 C -0.52 -14.37 9.87 -34.44 -0.34 -14.71 16 15 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 18 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.09 0.83 7.66 -51.93 -0.40 0.43 16 25 H 0.19 1.88 8.00 -52.49 -0.42 1.46 16 26 H 0.10 1.59 7.10 -51.93 -0.37 1.23 16 27 H 0.04 0.58 7.72 -51.93 -0.40 0.18 16 28 H 0.34 6.25 8.72 -39.29 -0.34 5.91 16 29 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 30 H -0.02 -0.38 7.57 -51.93 -0.39 -0.77 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 285.37 15.07 4.30 4.30 Total: -1.00 -31.58 285.37 -4.26 -35.84 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -3.13 Total: 0.38 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.02 Total: 0.07 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.15 Total: -48.67 kcal Atomic # 9 Polarization: -8.24 SS G_CDS: 0.11 Total: -8.13 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.58 -4.26 -35.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597116094.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.394 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds