Wall clock time and date at job start Mon Mar 30 2020 05:09:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 N 1.40082 * 126.03882 * 2 1
4 4 C 1.30843 * 108.20675 * 179.74052 * 3 2 1
5 5 C 1.39865 * 108.19782 * 0.43878 * 4 3 2
6 6 C 1.50703 * 126.03744 * 179.81653 * 5 4 3
7 7 F 1.39905 * 109.47157 * 359.69324 * 6 5 4
8 8 F 1.39900 * 109.47159 * 239.69625 * 6 5 4
9 9 F 1.39897 * 109.47274 * 119.69316 * 6 5 4
10 10 C 1.34946 * 126.03769 * 180.02562 * 2 1 3
11 11 C 1.50699 * 126.12759 * 359.95773 * 10 2 1
12 12 N 1.46903 * 109.47168 * 90.01957 * 11 10 2
13 13 C 1.46897 * 111.00074 * 179.97438 * 12 11 10
14 14 C 1.50705 * 109.47159 * 180.02562 * 13 12 11
15 15 H 1.07997 * 119.99924 * 0.02562 * 14 13 12
16 16 C 1.37878 * 120.00008 * 180.02562 * 14 13 12
17 17 N 1.31514 * 119.99830 * 179.97438 * 16 14 13
18 18 Si 1.86800 * 120.00110 * 0.02562 * 16 14 13
19 19 H 1.48500 * 109.47309 * 89.99679 * 18 16 14
20 20 H 1.48497 * 109.46956 * 209.99907 * 18 16 14
21 21 H 1.48509 * 109.46854 * 329.99631 * 18 16 14
22 22 H 1.08995 * 109.47108 * 269.97640 * 1 2 3
23 23 H 1.09003 * 109.47052 * 29.97176 * 1 2 3
24 24 H 1.08995 * 109.47516 * 149.97096 * 1 2 3
25 25 H 1.08000 * 125.89749 * 180.26139 * 4 3 2
26 26 H 1.08992 * 109.47490 * 210.02399 * 11 10 2
27 27 H 1.09002 * 109.46926 * 330.02921 * 11 10 2
28 28 H 1.00895 * 111.00640 * 303.96358 * 12 11 10
29 29 H 1.08997 * 109.47814 * 300.00628 * 13 12 11
30 30 H 1.09002 * 109.46907 * 60.00934 * 13 12 11
31 31 H 0.96998 * 119.99653 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2891 1.1327 0.0000
4 6 3.5347 0.7321 0.0056
5 6 3.5437 -0.6665 -0.0008
6 6 4.7680 -1.5453 -0.0014
7 9 5.9160 -0.7457 -0.0016
8 9 4.7619 -2.3527 -1.1439
9 9 4.7626 -2.3533 1.1406
10 6 2.2589 -1.0912 -0.0005
11 6 1.7974 -2.5258 -0.0002
12 7 1.6470 -2.9921 -1.3852
13 6 1.1978 -4.3901 -1.4241
14 6 1.0558 -4.8324 -2.8578
15 1 1.2775 -4.1439 -3.6597
16 6 0.6429 -6.1160 -3.1456
17 7 0.5185 -6.5018 -4.3967
18 14 0.2587 -7.3067 -1.7584
19 1 -1.1758 -7.1933 -1.3917
20 1 0.5479 -8.6939 -2.2025
21 1 1.0988 -6.9795 -0.5783
22 1 -0.3633 -0.0004 1.0276
23 1 -0.3633 0.8903 -0.5134
24 1 -0.3634 -0.8897 -0.5142
25 1 4.4054 1.3710 0.0111
26 1 2.5333 -3.1442 0.5135
27 1 0.8389 -2.5990 0.5137
28 1 1.0182 -2.3954 -1.9014
29 1 1.9299 -5.0212 -0.9204
30 1 0.2353 -4.4767 -0.9199
31 1 0.2276 -7.4047 -4.5991
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597116094.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:09:46
Heat of formation + Delta-G solvation = -70.234729 kcal
Electronic energy + Delta-G solvation = -20189.976805 eV
Core-core repulsion = 16479.453392 eV
Total energy + Delta-G solvation = -3710.523413 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.094 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-49.74571 -47.35208 -47.11648 -41.54029 -35.89889 -33.62985 -32.68922 -31.21812
-28.35675 -27.32874 -25.09531 -24.15172 -21.37917 -21.21304 -20.17140 -18.10625
-18.05599 -17.68011 -16.83509 -15.99356 -15.70790 -15.24391 -14.57488 -14.22598
-14.14549 -14.03579 -13.84662 -13.67140 -13.35584 -13.33458 -13.02515 -12.89901
-12.83220 -12.56462 -12.28161 -11.78580 -11.76537 -10.93180 -10.78367 -10.60018
-9.94289 -9.53201 -9.40057 -8.97077 -8.67822 -7.76689 -6.12763 -4.12106
1.53435 2.16933 2.33776 3.12425 3.22137 3.31379 3.32527 4.04552
4.23966 4.34855 4.38727 4.63700 4.80408 4.86050 4.94884 5.01485
5.17591 5.22374 5.25513 5.46271 5.64582 5.84863 6.24106 6.55376
6.66506 6.81819 7.38263 7.41693 7.67249 8.03123 8.52271 8.94980
9.47464 11.00308
Molecular weight = 263.09amu
Principal moments of inertia in cm(-1)
A = 0.022042 B = 0.006092 C = 0.005309
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1270.017132 B = 4595.224308 C = 5272.458437
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.096 3.904
2 N -0.362 5.362
3 N -0.291 5.291
4 C 0.093 3.907
5 C -0.329 4.329
6 C 0.544 3.456
7 F -0.185 7.185
8 F -0.160 7.160
9 F -0.185 7.185
10 C 0.170 3.830
11 C 0.102 3.898
12 N -0.664 5.664
13 C 0.166 3.834
14 C -0.519 4.519
15 H 0.080 0.920
16 C 0.071 3.929
17 N -0.897 5.897
18 Si 0.877 3.123
19 H -0.278 1.278
20 H -0.284 1.284
21 H -0.266 1.266
22 H 0.079 0.921
23 H 0.096 0.904
24 H 0.093 0.907
25 H 0.194 0.806
26 H 0.099 0.901
27 H 0.043 0.957
28 H 0.336 0.664
29 H 0.032 0.968
30 H -0.017 1.017
31 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.909 12.566 11.931 17.570
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.045 4.045
2 N -0.142 5.142
3 N -0.110 5.110
4 C -0.094 4.094
5 C -0.343 4.343
6 C 0.489 3.511
7 F -0.166 7.166
8 F -0.141 7.141
9 F -0.166 7.166
10 C 0.038 3.962
11 C -0.029 4.029
12 N -0.296 5.296
13 C 0.039 3.961
14 C -0.557 4.557
15 H 0.098 0.902
16 C -0.132 4.132
17 N -0.535 5.535
18 Si 0.704 3.296
19 H -0.203 1.203
20 H -0.210 1.210
21 H -0.190 1.190
22 H 0.098 0.902
23 H 0.115 0.885
24 H 0.111 0.889
25 H 0.211 0.789
26 H 0.117 0.883
27 H 0.061 0.939
28 H 0.153 0.847
29 H 0.050 0.950
30 H 0.000 1.000
31 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 2.559 13.247 11.738 17.883
hybrid contribution -0.461 -1.409 0.874 1.721
sum 2.099 11.838 12.612 17.424
Atomic orbital electron populations
1.22011 0.73340 1.05341 1.03827 1.48538 1.07032 1.03144 1.55476
1.77437 1.00972 1.07595 1.25017 1.23638 0.95837 0.92670 0.97285
1.19787 0.92542 0.94757 1.27240 1.17238 0.81727 0.78101 0.74040
1.93127 1.53195 1.73931 1.96364 1.93328 1.96505 1.74190 1.50058
1.93165 1.96674 1.75045 1.51729 1.20932 0.89830 0.91170 0.94232
1.20807 1.00756 0.86789 0.94545 1.60547 1.55727 1.05650 1.07631
1.20071 0.93011 0.84236 0.98760 1.20975 1.45391 0.98623 0.90689
0.90153 1.24887 0.94969 0.97884 0.95420 1.69890 1.47151 1.18874
1.17599 0.86841 0.78902 0.80895 0.82970 1.20345 1.20994 1.19043
0.90212 0.88548 0.88888 0.78941 0.88291 0.93912 0.84658 0.94972
0.99973 0.92511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.89 11.09 59.85 0.66 1.55 16
2 N -0.36 -4.81 4.01 -63.89 -0.26 -5.06 16
3 N -0.29 -4.06 12.58 30.62 0.39 -3.67 16
4 C 0.09 1.22 11.45 -17.36 -0.20 1.02 16
5 C -0.33 -4.88 5.52 -105.05 -0.58 -5.45 16
6 C 0.54 8.31 3.11 36.01 0.11 8.42 16
7 F -0.18 -2.56 16.82 2.25 0.04 -2.52 16
8 F -0.16 -2.87 17.30 2.25 0.04 -2.84 16
9 F -0.18 -2.81 16.44 2.25 0.04 -2.77 16
10 C 0.17 2.51 6.44 -82.27 -0.53 1.98 16
11 C 0.10 1.60 5.48 -4.98 -0.03 1.57 16
12 N -0.66 -12.90 6.48 -116.34 -0.75 -13.65 16
13 C 0.17 3.81 4.51 -4.98 -0.02 3.79 16
14 C -0.52 -14.37 9.87 -34.44 -0.34 -14.71 16
15 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16
16 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16
17 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16
18 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16
19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
21 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16
22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
23 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16
24 H 0.09 0.83 7.66 -51.93 -0.40 0.43 16
25 H 0.19 1.88 8.00 -52.49 -0.42 1.46 16
26 H 0.10 1.59 7.10 -51.93 -0.37 1.23 16
27 H 0.04 0.58 7.72 -51.93 -0.40 0.18 16
28 H 0.34 6.25 8.72 -39.29 -0.34 5.91 16
29 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16
30 H -0.02 -0.38 7.57 -51.93 -0.39 -0.77 16
31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 285.37 15.07 4.30 4.30
Total: -1.00 -31.58 285.37 -4.26 -35.84
By element:
Atomic # 1 Polarization: 3.51 SS G_CDS: -3.13 Total: 0.38 kcal
Atomic # 6 Polarization: 1.09 SS G_CDS: -1.02 Total: 0.07 kcal
Atomic # 7 Polarization: -48.82 SS G_CDS: 0.15 Total: -48.67 kcal
Atomic # 9 Polarization: -8.24 SS G_CDS: 0.11 Total: -8.13 kcal
Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -31.58 -4.26 -35.84 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597116094.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.394 kcal
(2) G-P(sol) polarization free energy of solvation -31.584 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.978 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.257 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds