Wall clock time and date at job start Mon Mar 30 2020 05:09:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 N 1.40082 * 126.03882 * 2 1
4 4 C 1.30843 * 108.20675 * 179.74052 * 3 2 1
5 5 C 1.39865 * 108.19782 * 0.43878 * 4 3 2
6 6 C 1.50703 * 126.03744 * 179.81653 * 5 4 3
7 7 F 1.39905 * 109.47157 * 359.69324 * 6 5 4
8 8 F 1.39900 * 109.47159 * 239.69625 * 6 5 4
9 9 F 1.39897 * 109.47274 * 119.69316 * 6 5 4
10 10 C 1.34946 * 126.03769 * 180.02562 * 2 1 3
11 11 C 1.50699 * 126.12759 * 359.95773 * 10 2 1
12 12 N 1.46903 * 109.47168 * 90.01957 * 11 10 2
13 13 C 1.46897 * 111.00074 * 179.97438 * 12 11 10
14 14 C 1.50705 * 109.47159 * 180.02562 * 13 12 11
15 15 H 1.07997 * 119.99924 * 0.02562 * 14 13 12
16 16 C 1.37878 * 120.00008 * 180.02562 * 14 13 12
17 17 N 1.31514 * 119.99830 * 179.97438 * 16 14 13
18 18 Si 1.86800 * 120.00110 * 0.02562 * 16 14 13
19 19 H 1.48500 * 109.47309 * 89.99679 * 18 16 14
20 20 H 1.48497 * 109.46956 * 209.99907 * 18 16 14
21 21 H 1.48509 * 109.46854 * 329.99631 * 18 16 14
22 22 H 1.08995 * 109.47108 * 269.97640 * 1 2 3
23 23 H 1.09003 * 109.47052 * 29.97176 * 1 2 3
24 24 H 1.08995 * 109.47516 * 149.97096 * 1 2 3
25 25 H 1.08000 * 125.89749 * 180.26139 * 4 3 2
26 26 H 1.08992 * 109.47490 * 210.02399 * 11 10 2
27 27 H 1.09002 * 109.46926 * 330.02921 * 11 10 2
28 28 H 1.00895 * 111.00640 * 303.96358 * 12 11 10
29 29 H 1.08997 * 109.47814 * 300.00628 * 13 12 11
30 30 H 1.09002 * 109.46907 * 60.00934 * 13 12 11
31 31 H 0.96998 * 119.99653 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2891 1.1327 0.0000
4 6 3.5347 0.7321 0.0056
5 6 3.5437 -0.6665 -0.0008
6 6 4.7680 -1.5453 -0.0014
7 9 5.9160 -0.7457 -0.0016
8 9 4.7619 -2.3527 -1.1439
9 9 4.7626 -2.3533 1.1406
10 6 2.2589 -1.0912 -0.0005
11 6 1.7974 -2.5258 -0.0002
12 7 1.6470 -2.9921 -1.3852
13 6 1.1978 -4.3901 -1.4241
14 6 1.0558 -4.8324 -2.8578
15 1 1.2775 -4.1439 -3.6597
16 6 0.6429 -6.1160 -3.1456
17 7 0.5185 -6.5018 -4.3967
18 14 0.2587 -7.3067 -1.7584
19 1 -1.1758 -7.1933 -1.3917
20 1 0.5479 -8.6939 -2.2025
21 1 1.0988 -6.9795 -0.5783
22 1 -0.3633 -0.0004 1.0276
23 1 -0.3633 0.8903 -0.5134
24 1 -0.3634 -0.8897 -0.5142
25 1 4.4054 1.3710 0.0111
26 1 2.5333 -3.1442 0.5135
27 1 0.8389 -2.5990 0.5137
28 1 1.0182 -2.3954 -1.9014
29 1 1.9299 -5.0212 -0.9204
30 1 0.2353 -4.4767 -0.9199
31 1 0.2276 -7.4047 -4.5991
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597116094.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:09:46
Heat of formation + Delta-G solvation = -93.051144 kcal
Electronic energy + Delta-G solvation = -20190.966199 eV
Core-core repulsion = 16479.453392 eV
Total energy + Delta-G solvation = -3711.512807 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.094 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-50.95735 -48.51917 -48.40265 -42.58403 -37.42001 -34.81289 -34.43939 -32.59849
-29.84431 -28.51629 -26.37489 -25.45583 -23.17843 -22.31145 -21.28682 -19.30485
-19.27437 -19.12327 -18.57589 -17.10018 -16.81978 -16.74501 -16.05787 -15.56160
-15.41923 -15.30708 -15.17748 -14.90756 -14.64084 -14.60342 -14.45787 -14.24334
-13.97310 -13.72793 -13.49022 -13.37073 -12.99027 -12.67362 -12.41787 -11.91324
-11.81390 -11.52057 -10.81176 -10.56777 -10.03971 -9.28644 -8.28930 -6.34264
0.43533 1.21711 1.29656 1.36320 1.40334 1.50430 1.96292 2.35286
2.92408 3.05517 3.11458 3.23210 3.52660 3.64541 3.66791 3.86338
4.23284 4.32577 4.40861 4.45795 4.60624 4.68463 4.79942 5.01703
5.25567 5.50066 5.66816 5.84182 6.35211 6.44197 6.52577 6.73948
7.30232 8.87863
Molecular weight = 263.09amu
Principal moments of inertia in cm(-1)
A = 0.022042 B = 0.006092 C = 0.005309
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1270.017132 B = 4595.224308 C = 5272.458437
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.085 3.915
2 N -0.359 5.359
3 N -0.303 5.303
4 C 0.095 3.905
5 C -0.343 4.343
6 C 0.545 3.455
7 F -0.176 7.176
8 F -0.180 7.180
9 F -0.185 7.185
10 C 0.159 3.841
11 C 0.108 3.892
12 N -0.677 5.677
13 C 0.178 3.822
14 C -0.528 4.528
15 H 0.035 0.965
16 C 0.008 3.992
17 N -0.948 5.948
18 Si 0.950 3.050
19 H -0.262 1.262
20 H -0.285 1.285
21 H -0.246 1.246
22 H 0.103 0.897
23 H 0.109 0.891
24 H 0.096 0.904
25 H 0.221 0.779
26 H 0.094 0.906
27 H 0.071 0.929
28 H 0.339 0.661
29 H 0.029 0.971
30 H 0.001 0.999
31 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.301 13.039 14.228 19.436
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 N -0.138 5.138
3 N -0.122 5.122
4 C -0.091 4.091
5 C -0.357 4.357
6 C 0.490 3.510
7 F -0.158 7.158
8 F -0.162 7.162
9 F -0.166 7.166
10 C 0.026 3.974
11 C -0.023 4.023
12 N -0.309 5.309
13 C 0.050 3.950
14 C -0.566 4.566
15 H 0.053 0.947
16 C -0.189 4.189
17 N -0.588 5.588
18 Si 0.773 3.227
19 H -0.187 1.187
20 H -0.211 1.211
21 H -0.170 1.170
22 H 0.122 0.878
23 H 0.127 0.873
24 H 0.114 0.886
25 H 0.238 0.762
26 H 0.112 0.888
27 H 0.089 0.911
28 H 0.157 0.843
29 H 0.047 0.953
30 H 0.019 0.981
31 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 1.943 13.761 14.054 19.765
hybrid contribution -0.242 -1.440 0.104 1.464
sum 1.701 12.321 14.158 18.845
Atomic orbital electron populations
1.22363 0.71266 1.06176 1.05656 1.48855 1.08210 1.02426 1.54294
1.77422 1.01407 1.08013 1.25390 1.24085 0.96516 0.92259 0.96269
1.19913 0.92316 0.95513 1.27987 1.17308 0.82367 0.77983 0.73367
1.93137 1.52825 1.73541 1.96283 1.93287 1.96652 1.74925 1.51296
1.93159 1.96724 1.75182 1.51582 1.20790 0.90234 0.91133 0.95257
1.20731 1.02038 0.87224 0.92288 1.60332 1.55850 1.04236 1.10486
1.19787 0.93726 0.86122 0.95383 1.21273 1.44819 0.98182 0.92337
0.94660 1.25883 0.94756 1.00071 0.98232 1.70058 1.48819 1.19617
1.20349 0.85672 0.79659 0.77633 0.79701 1.18672 1.21119 1.16973
0.87847 0.87283 0.88566 0.76213 0.88763 0.91127 0.84344 0.95305
0.98123 0.92372
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.34 11.09 127.77 1.42 2.76 16
2 N -0.36 -8.71 4.01 -356.04 -1.43 -10.14 16
3 N -0.30 -7.80 12.58 -57.02 -0.72 -8.51 16
4 C 0.10 2.30 11.45 85.23 0.98 3.28 16
5 C -0.34 -9.65 5.52 -20.14 -0.11 -9.76 16
6 C 0.55 16.11 3.11 71.24 0.22 16.33 16
7 F -0.18 -4.67 16.82 44.97 0.76 -3.91 16
8 F -0.18 -6.47 17.30 44.97 0.78 -5.69 16
9 F -0.19 -5.42 16.44 44.97 0.74 -4.68 16
10 C 0.16 4.41 6.44 41.40 0.27 4.68 16
11 C 0.11 3.15 5.48 85.56 0.47 3.62 16
12 N -0.68 -25.69 6.48 -521.99 -3.38 -29.07 16
13 C 0.18 7.91 4.51 85.56 0.39 8.30 16
14 C -0.53 -29.68 9.87 25.60 0.25 -29.43 16
15 H 0.04 2.23 8.06 -2.91 -0.02 2.21 16
16 C 0.01 0.46 5.47 84.65 0.46 0.93 16
17 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16
18 Si 0.95 42.34 27.47 68.60 1.88 44.22 16
19 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16
20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16
21 H -0.25 -10.12 6.54 99.48 0.65 -9.47 16
22 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
23 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16
24 H 0.10 1.48 7.66 -2.39 -0.02 1.46 16
25 H 0.22 3.75 8.00 -2.91 -0.02 3.72 16
26 H 0.09 2.86 7.10 -2.39 -0.02 2.85 16
27 H 0.07 1.69 7.72 -2.39 -0.02 1.67 16
28 H 0.34 12.43 8.72 -89.70 -0.78 11.64 16
29 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16
30 H 0.00 0.05 7.57 -2.39 -0.02 0.03 16
31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16
Total: -1.00 -68.57 285.37 3.61 -64.96
By element:
Atomic # 1 Polarization: 10.02 SS G_CDS: 0.34 Total: 10.36 kcal
Atomic # 6 Polarization: -3.64 SS G_CDS: 4.34 Total: 0.70 kcal
Atomic # 7 Polarization: -100.74 SS G_CDS: -5.23 Total: -105.96 kcal
Atomic # 9 Polarization: -16.56 SS G_CDS: 2.27 Total: -14.28 kcal
Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal
Total: -68.57 3.61 -64.96 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597116094.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.086 kcal
(2) G-P(sol) polarization free energy of solvation -68.574 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.661 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.051 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds