Wall clock time and date at job start Mon Mar 30 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40082 * 126.03882 * 2 1 4 4 C 1.30843 * 108.20675 * 179.74052 * 3 2 1 5 5 C 1.39865 * 108.19782 * 0.43878 * 4 3 2 6 6 C 1.50703 * 126.03744 * 179.81653 * 5 4 3 7 7 F 1.39905 * 109.47157 * 359.69324 * 6 5 4 8 8 F 1.39900 * 109.47159 * 239.69625 * 6 5 4 9 9 F 1.39897 * 109.47274 * 119.69316 * 6 5 4 10 10 C 1.34946 * 126.03769 * 180.02562 * 2 1 3 11 11 C 1.50699 * 126.12759 * 359.95773 * 10 2 1 12 12 N 1.46903 * 109.47168 * 90.01957 * 11 10 2 13 13 C 1.46897 * 111.00074 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99924 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00008 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99830 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00110 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47309 * 89.99679 * 18 16 14 20 20 H 1.48497 * 109.46956 * 209.99907 * 18 16 14 21 21 H 1.48509 * 109.46854 * 329.99631 * 18 16 14 22 22 H 1.08995 * 109.47108 * 269.97640 * 1 2 3 23 23 H 1.09003 * 109.47052 * 29.97176 * 1 2 3 24 24 H 1.08995 * 109.47516 * 149.97096 * 1 2 3 25 25 H 1.08000 * 125.89749 * 180.26139 * 4 3 2 26 26 H 1.08992 * 109.47490 * 210.02399 * 11 10 2 27 27 H 1.09002 * 109.46926 * 330.02921 * 11 10 2 28 28 H 1.00895 * 111.00640 * 303.96358 * 12 11 10 29 29 H 1.08997 * 109.47814 * 300.00628 * 13 12 11 30 30 H 1.09002 * 109.46907 * 60.00934 * 13 12 11 31 31 H 0.96998 * 119.99653 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7321 0.0056 5 6 3.5437 -0.6665 -0.0008 6 6 4.7680 -1.5453 -0.0014 7 9 5.9160 -0.7457 -0.0016 8 9 4.7619 -2.3527 -1.1439 9 9 4.7626 -2.3533 1.1406 10 6 2.2589 -1.0912 -0.0005 11 6 1.7974 -2.5258 -0.0002 12 7 1.6470 -2.9921 -1.3852 13 6 1.1978 -4.3901 -1.4241 14 6 1.0558 -4.8324 -2.8578 15 1 1.2775 -4.1439 -3.6597 16 6 0.6429 -6.1160 -3.1456 17 7 0.5185 -6.5018 -4.3967 18 14 0.2587 -7.3067 -1.7584 19 1 -1.1758 -7.1933 -1.3917 20 1 0.5479 -8.6939 -2.2025 21 1 1.0988 -6.9795 -0.5783 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8903 -0.5134 24 1 -0.3634 -0.8897 -0.5142 25 1 4.4054 1.3710 0.0111 26 1 2.5333 -3.1442 0.5135 27 1 0.8389 -2.5990 0.5137 28 1 1.0182 -2.3954 -1.9014 29 1 1.9299 -5.0212 -0.9204 30 1 0.2353 -4.4767 -0.9199 31 1 0.2276 -7.4047 -4.5991 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597116094.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:46 Heat of formation + Delta-G solvation = -93.051144 kcal Electronic energy + Delta-G solvation = -20190.966199 eV Core-core repulsion = 16479.453392 eV Total energy + Delta-G solvation = -3711.512807 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.95735 -48.51917 -48.40265 -42.58403 -37.42001 -34.81289 -34.43939 -32.59849 -29.84431 -28.51629 -26.37489 -25.45583 -23.17843 -22.31145 -21.28682 -19.30485 -19.27437 -19.12327 -18.57589 -17.10018 -16.81978 -16.74501 -16.05787 -15.56160 -15.41923 -15.30708 -15.17748 -14.90756 -14.64084 -14.60342 -14.45787 -14.24334 -13.97310 -13.72793 -13.49022 -13.37073 -12.99027 -12.67362 -12.41787 -11.91324 -11.81390 -11.52057 -10.81176 -10.56777 -10.03971 -9.28644 -8.28930 -6.34264 0.43533 1.21711 1.29656 1.36320 1.40334 1.50430 1.96292 2.35286 2.92408 3.05517 3.11458 3.23210 3.52660 3.64541 3.66791 3.86338 4.23284 4.32577 4.40861 4.45795 4.60624 4.68463 4.79942 5.01703 5.25567 5.50066 5.66816 5.84182 6.35211 6.44197 6.52577 6.73948 7.30232 8.87863 Molecular weight = 263.09amu Principal moments of inertia in cm(-1) A = 0.022042 B = 0.006092 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.017132 B = 4595.224308 C = 5272.458437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.359 5.359 3 N -0.303 5.303 4 C 0.095 3.905 5 C -0.343 4.343 6 C 0.545 3.455 7 F -0.176 7.176 8 F -0.180 7.180 9 F -0.185 7.185 10 C 0.159 3.841 11 C 0.108 3.892 12 N -0.677 5.677 13 C 0.178 3.822 14 C -0.528 4.528 15 H 0.035 0.965 16 C 0.008 3.992 17 N -0.948 5.948 18 Si 0.950 3.050 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.246 1.246 22 H 0.103 0.897 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.221 0.779 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.339 0.661 29 H 0.029 0.971 30 H 0.001 0.999 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 13.039 14.228 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.138 5.138 3 N -0.122 5.122 4 C -0.091 4.091 5 C -0.357 4.357 6 C 0.490 3.510 7 F -0.158 7.158 8 F -0.162 7.162 9 F -0.166 7.166 10 C 0.026 3.974 11 C -0.023 4.023 12 N -0.309 5.309 13 C 0.050 3.950 14 C -0.566 4.566 15 H 0.053 0.947 16 C -0.189 4.189 17 N -0.588 5.588 18 Si 0.773 3.227 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.170 1.170 22 H 0.122 0.878 23 H 0.127 0.873 24 H 0.114 0.886 25 H 0.238 0.762 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.157 0.843 29 H 0.047 0.953 30 H 0.019 0.981 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.943 13.761 14.054 19.765 hybrid contribution -0.242 -1.440 0.104 1.464 sum 1.701 12.321 14.158 18.845 Atomic orbital electron populations 1.22363 0.71266 1.06176 1.05656 1.48855 1.08210 1.02426 1.54294 1.77422 1.01407 1.08013 1.25390 1.24085 0.96516 0.92259 0.96269 1.19913 0.92316 0.95513 1.27987 1.17308 0.82367 0.77983 0.73367 1.93137 1.52825 1.73541 1.96283 1.93287 1.96652 1.74925 1.51296 1.93159 1.96724 1.75182 1.51582 1.20790 0.90234 0.91133 0.95257 1.20731 1.02038 0.87224 0.92288 1.60332 1.55850 1.04236 1.10486 1.19787 0.93726 0.86122 0.95383 1.21273 1.44819 0.98182 0.92337 0.94660 1.25883 0.94756 1.00071 0.98232 1.70058 1.48819 1.19617 1.20349 0.85672 0.79659 0.77633 0.79701 1.18672 1.21119 1.16973 0.87847 0.87283 0.88566 0.76213 0.88763 0.91127 0.84344 0.95305 0.98123 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 11.09 127.77 1.42 2.76 16 2 N -0.36 -8.71 4.01 -356.04 -1.43 -10.14 16 3 N -0.30 -7.80 12.58 -57.02 -0.72 -8.51 16 4 C 0.10 2.30 11.45 85.23 0.98 3.28 16 5 C -0.34 -9.65 5.52 -20.14 -0.11 -9.76 16 6 C 0.55 16.11 3.11 71.24 0.22 16.33 16 7 F -0.18 -4.67 16.82 44.97 0.76 -3.91 16 8 F -0.18 -6.47 17.30 44.97 0.78 -5.69 16 9 F -0.19 -5.42 16.44 44.97 0.74 -4.68 16 10 C 0.16 4.41 6.44 41.40 0.27 4.68 16 11 C 0.11 3.15 5.48 85.56 0.47 3.62 16 12 N -0.68 -25.69 6.48 -521.99 -3.38 -29.07 16 13 C 0.18 7.91 4.51 85.56 0.39 8.30 16 14 C -0.53 -29.68 9.87 25.60 0.25 -29.43 16 15 H 0.04 2.23 8.06 -2.91 -0.02 2.21 16 16 C 0.01 0.46 5.47 84.65 0.46 0.93 16 17 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 18 Si 0.95 42.34 27.47 68.60 1.88 44.22 16 19 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.25 -10.12 6.54 99.48 0.65 -9.47 16 22 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.10 1.48 7.66 -2.39 -0.02 1.46 16 25 H 0.22 3.75 8.00 -2.91 -0.02 3.72 16 26 H 0.09 2.86 7.10 -2.39 -0.02 2.85 16 27 H 0.07 1.69 7.72 -2.39 -0.02 1.67 16 28 H 0.34 12.43 8.72 -89.70 -0.78 11.64 16 29 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 30 H 0.00 0.05 7.57 -2.39 -0.02 0.03 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.57 285.37 3.61 -64.96 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.34 Total: 10.36 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 4.34 Total: 0.70 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -5.23 Total: -105.96 kcal Atomic # 9 Polarization: -16.56 SS G_CDS: 2.27 Total: -14.28 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal Total: -68.57 3.61 -64.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597116094.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.086 kcal (2) G-P(sol) polarization free energy of solvation -68.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds