Wall clock time and date at job start Mon Mar 30 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86806 * 119.99618 * 2 1 4 4 H 1.48491 * 109.46959 * 274.98177 * 3 2 1 5 5 H 1.48503 * 109.46978 * 34.98250 * 3 2 1 6 6 H 1.48502 * 109.47036 * 154.98035 * 3 2 1 7 7 C 1.40043 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99708 * 186.15283 * 7 2 1 9 9 C 1.46367 * 120.00227 * 6.15629 * 7 2 1 10 10 O 1.21690 * 120.00248 * 353.93322 * 9 7 2 11 11 N 1.34783 * 120.00162 * 173.66232 * 9 7 2 12 12 C 1.46497 * 120.00084 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47218 * 179.97438 * 12 11 9 14 14 O 1.42904 * 109.47245 * 64.99592 * 13 12 11 15 15 C 1.53011 * 109.46936 * 305.00047 * 13 12 11 16 16 C 1.52999 * 109.46936 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47186 * 59.99864 * 16 15 13 18 18 F 1.39904 * 109.46985 * 179.97438 * 17 16 15 19 19 F 1.39896 * 109.47152 * 60.00043 * 17 16 15 20 20 C 1.52998 * 109.47504 * 299.99784 * 17 16 15 21 21 C 1.52996 * 109.47560 * 184.99920 * 13 12 11 22 22 H 0.96994 * 120.00710 * 0.02562 * 1 2 3 23 23 H 0.96998 * 119.99823 * 359.97438 * 11 9 7 24 24 H 1.08998 * 109.47166 * 299.99854 * 12 11 9 25 25 H 1.09000 * 109.47161 * 59.99891 * 12 11 9 26 26 H 0.96701 * 114.00113 * 300.00285 * 14 13 12 27 27 H 1.08999 * 109.46995 * 299.99560 * 15 13 12 28 28 H 1.08996 * 109.46971 * 59.99652 * 15 13 12 29 29 H 1.08999 * 109.46919 * 299.99606 * 16 15 13 30 30 H 1.08997 * 109.46894 * 179.97438 * 16 15 13 31 31 H 1.09007 * 109.47269 * 300.00536 * 20 17 16 32 32 H 1.08995 * 109.47901 * 180.02562 * 20 17 16 33 33 H 1.08997 * 109.47098 * 299.99974 * 21 13 12 34 34 H 1.09003 * 109.47131 * 59.99430 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4946 2.6200 0.8027 6 1 3.5869 1.4123 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2154 0.1008 9 6 1.2815 -2.4768 -0.1348 10 8 0.0647 -2.4828 -0.1368 11 7 1.9613 -3.6336 -0.2628 12 6 1.2352 -4.8988 -0.3977 13 6 2.2353 -6.0495 -0.5268 14 8 2.9823 -6.1697 0.6856 15 6 3.1903 -5.7673 -1.6884 16 6 4.1908 -6.9177 -1.8171 17 6 3.4366 -8.2222 -2.0822 18 9 4.3515 -9.2740 -2.2005 19 9 2.7055 -8.1051 -3.2692 20 6 2.4816 -8.5045 -0.9207 21 6 1.4807 -7.3537 -0.7923 22 1 -0.4851 0.8399 -0.0004 23 1 2.9313 -3.6284 -0.2656 24 1 0.6119 -5.0557 0.4826 25 1 0.6058 -4.8635 -1.2869 26 1 3.4867 -5.3778 0.9168 27 1 2.6206 -5.6757 -2.6131 28 1 3.7279 -4.8382 -1.4992 29 1 4.7605 -7.0089 -0.8923 30 1 4.8709 -6.7169 -2.6448 31 1 3.0513 -8.5956 0.0042 32 1 1.9447 -9.4340 -1.1094 33 1 0.8004 -7.5548 0.0352 34 1 0.9109 -7.2621 -1.7170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598423973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:27 Heat of formation + Delta-G solvation = -208.692750 kcal Electronic energy + Delta-G solvation = -20646.262320 eV Core-core repulsion = 17020.902471 eV Total energy + Delta-G solvation = -3625.359849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.112 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.01425 -47.00003 -39.50849 -36.98957 -34.57991 -33.16525 -32.29163 -31.35203 -29.62638 -26.68342 -24.71782 -23.39203 -21.57625 -20.04653 -19.66440 -17.76986 -17.33065 -17.15724 -16.30088 -15.84104 -15.33211 -15.10157 -14.70294 -14.09951 -13.90130 -13.87632 -13.60707 -13.40059 -13.18565 -12.68695 -12.60103 -12.50543 -12.22345 -11.91547 -11.62697 -11.39551 -11.27389 -11.15788 -10.98425 -10.86557 -10.52611 -10.33607 -10.12798 -9.70709 -8.90284 -7.69557 -7.63243 -6.25344 -4.70332 3.10288 3.17702 3.20835 3.68850 3.97369 4.04008 4.14835 4.29353 4.38817 4.52841 4.58803 4.78152 4.98063 4.99341 5.12641 5.20832 5.45573 5.55580 5.66414 5.68086 5.73302 5.87750 5.88095 6.07192 6.11679 6.34226 6.42431 7.37761 7.67545 7.81569 7.97184 8.23919 8.96706 9.41586 10.53132 10.71147 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.040175 B = 0.004430 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.777342 B = 6319.559672 C = 6539.882525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.579 6.579 11 N -0.767 5.767 12 C 0.110 3.890 13 C 0.123 3.877 14 O -0.557 6.557 15 C -0.145 4.145 16 C -0.152 4.152 17 C 0.287 3.713 18 F -0.206 7.206 19 F -0.201 7.201 20 C -0.151 4.151 21 C -0.102 4.102 22 H 0.269 0.731 23 H 0.376 0.624 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.379 0.621 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 -13.405 -2.466 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.461 6.461 11 N -0.425 5.425 12 C -0.016 4.016 13 C 0.082 3.918 14 O -0.363 6.363 15 C -0.182 4.182 16 C -0.190 4.190 17 C 0.251 3.749 18 F -0.187 7.187 19 F -0.182 7.182 20 C -0.189 4.189 21 C -0.140 4.140 22 H 0.080 0.920 23 H 0.208 0.792 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.227 0.773 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.900 -13.925 -2.498 15.740 hybrid contribution 1.198 1.271 -0.234 1.762 sum 8.098 -12.654 -2.732 15.270 Atomic orbital electron populations 1.70017 1.07110 1.27373 1.35038 1.25701 0.94590 1.00329 0.92569 0.86360 0.80214 0.81491 0.78700 1.19796 1.20422 1.18884 1.20863 0.94046 0.89554 1.53936 0.91413 1.18229 0.87168 0.82303 0.76434 1.90610 1.14109 1.86292 1.55119 1.46185 1.08205 1.05830 1.82278 1.21519 0.94269 0.84145 1.01644 1.21464 0.91019 0.95142 0.84155 1.86447 1.65609 1.42721 1.41535 1.22202 0.97712 0.97930 1.00400 1.22434 0.99124 0.92576 1.04850 1.21189 0.84455 0.86379 0.82924 1.92987 1.68619 1.60557 1.96575 1.92986 1.78426 1.96378 1.50438 1.22424 0.98105 1.00434 0.97903 1.21461 0.97220 0.91614 1.03716 0.92038 0.79206 0.92217 0.92397 0.77256 0.89746 0.89580 0.88275 0.89753 0.87956 0.89760 0.89463 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.67 11.85 55.55 0.66 -22.01 16 2 C 0.09 2.41 5.49 -17.37 -0.10 2.31 16 3 Si 0.91 19.67 29.56 -169.99 -5.03 14.64 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.55 -14.94 9.53 -35.64 -0.34 -15.28 16 8 H 0.07 1.68 7.86 -52.48 -0.41 1.26 16 9 C 0.55 15.21 7.74 -12.99 -0.10 15.11 16 10 O -0.58 -18.42 15.05 5.20 0.08 -18.34 16 11 N -0.77 -15.73 5.02 -61.72 -0.31 -16.04 16 12 C 0.11 1.96 4.84 -4.04 -0.02 1.94 16 13 C 0.12 1.61 0.71 -90.62 -0.06 1.55 16 14 O -0.56 -7.08 11.63 -35.23 -0.41 -7.49 16 15 C -0.14 -1.73 4.57 -26.73 -0.12 -1.85 16 16 C -0.15 -1.61 5.31 -26.73 -0.14 -1.75 16 17 C 0.29 3.33 2.10 -26.73 -0.06 3.28 16 18 F -0.21 -2.59 17.06 2.25 0.04 -2.55 16 19 F -0.20 -2.64 16.03 2.25 0.04 -2.61 16 20 C -0.15 -1.60 5.31 -26.71 -0.14 -1.74 16 21 C -0.10 -1.20 4.83 -26.71 -0.13 -1.32 16 22 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16 23 H 0.38 6.46 6.34 -40.82 -0.26 6.20 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.38 4.22 8.19 45.56 0.37 4.59 16 27 H 0.08 1.09 7.80 -51.93 -0.41 0.68 16 28 H 0.09 1.01 6.57 -51.93 -0.34 0.67 16 29 H 0.10 0.97 7.68 -51.93 -0.40 0.57 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.07 7.68 -51.92 -0.40 0.67 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.00 7.80 -51.93 -0.41 0.60 16 LS Contribution 286.89 15.07 4.32 4.32 Total: -1.00 -33.67 286.89 -5.32 -38.98 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -3.50 Total: 8.84 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.21 Total: 2.24 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.35 Total: -38.05 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.33 Total: -25.82 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.07 Total: -5.15 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.67 -5.32 -38.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598423973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.710 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds