Wall clock time and date at job start Mon Mar 30 2020 05:26:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30673 * 1
3 3 Si 1.86806 * 119.99618 * 2 1
4 4 H 1.48491 * 109.46959 * 274.98177 * 3 2 1
5 5 H 1.48503 * 109.46978 * 34.98250 * 3 2 1
6 6 H 1.48502 * 109.47036 * 154.98035 * 3 2 1
7 7 C 1.40043 * 120.00127 * 179.97438 * 2 1 3
8 8 H 1.08006 * 119.99708 * 186.15283 * 7 2 1
9 9 C 1.46367 * 120.00227 * 6.15629 * 7 2 1
10 10 O 1.21690 * 120.00248 * 353.93322 * 9 7 2
11 11 N 1.34783 * 120.00162 * 173.66232 * 9 7 2
12 12 C 1.46497 * 120.00084 * 179.97438 * 11 9 7
13 13 C 1.52999 * 109.47218 * 179.97438 * 12 11 9
14 14 O 1.42904 * 109.47245 * 64.99592 * 13 12 11
15 15 C 1.53011 * 109.46936 * 305.00047 * 13 12 11
16 16 C 1.52999 * 109.46936 * 179.97438 * 15 13 12
17 17 C 1.52996 * 109.47186 * 59.99864 * 16 15 13
18 18 F 1.39904 * 109.46985 * 179.97438 * 17 16 15
19 19 F 1.39896 * 109.47152 * 60.00043 * 17 16 15
20 20 C 1.52998 * 109.47504 * 299.99784 * 17 16 15
21 21 C 1.52996 * 109.47560 * 184.99920 * 13 12 11
22 22 H 0.96994 * 120.00710 * 0.02562 * 1 2 3
23 23 H 0.96998 * 119.99823 * 359.97438 * 11 9 7
24 24 H 1.08998 * 109.47166 * 299.99854 * 12 11 9
25 25 H 1.09000 * 109.47161 * 59.99891 * 12 11 9
26 26 H 0.96701 * 114.00113 * 300.00285 * 14 13 12
27 27 H 1.08999 * 109.46995 * 299.99560 * 15 13 12
28 28 H 1.08996 * 109.46971 * 59.99652 * 15 13 12
29 29 H 1.08999 * 109.46919 * 299.99606 * 16 15 13
30 30 H 1.08997 * 109.46894 * 179.97438 * 16 15 13
31 31 H 1.09007 * 109.47269 * 300.00536 * 20 17 16
32 32 H 1.08995 * 109.47901 * 180.02562 * 20 17 16
33 33 H 1.08997 * 109.47098 * 299.99974 * 21 13 12
34 34 H 1.09003 * 109.47131 * 59.99430 * 21 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6179 0.0000
4 1 2.3828 2.1073 -1.3947
5 1 1.4946 2.6200 0.8027
6 1 3.5869 1.4123 0.5921
7 6 2.0070 -1.2128 0.0005
8 1 3.0824 -1.2154 0.1008
9 6 1.2815 -2.4768 -0.1348
10 8 0.0647 -2.4828 -0.1368
11 7 1.9613 -3.6336 -0.2628
12 6 1.2352 -4.8988 -0.3977
13 6 2.2353 -6.0495 -0.5268
14 8 2.9823 -6.1697 0.6856
15 6 3.1903 -5.7673 -1.6884
16 6 4.1908 -6.9177 -1.8171
17 6 3.4366 -8.2222 -2.0822
18 9 4.3515 -9.2740 -2.2005
19 9 2.7055 -8.1051 -3.2692
20 6 2.4816 -8.5045 -0.9207
21 6 1.4807 -7.3537 -0.7923
22 1 -0.4851 0.8399 -0.0004
23 1 2.9313 -3.6284 -0.2656
24 1 0.6119 -5.0557 0.4826
25 1 0.6058 -4.8635 -1.2869
26 1 3.4867 -5.3778 0.9168
27 1 2.6206 -5.6757 -2.6131
28 1 3.7279 -4.8382 -1.4992
29 1 4.7605 -7.0089 -0.8923
30 1 4.8709 -6.7169 -2.6448
31 1 3.0513 -8.5956 0.0042
32 1 1.9447 -9.4340 -1.1094
33 1 0.8004 -7.5548 0.0352
34 1 0.9109 -7.2621 -1.7170
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000598423973.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:26:27
Heat of formation + Delta-G solvation = -208.692750 kcal
Electronic energy + Delta-G solvation = -20646.262320 eV
Core-core repulsion = 17020.902471 eV
Total energy + Delta-G solvation = -3625.359849 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.112 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-49.01425 -47.00003 -39.50849 -36.98957 -34.57991 -33.16525 -32.29163 -31.35203
-29.62638 -26.68342 -24.71782 -23.39203 -21.57625 -20.04653 -19.66440 -17.76986
-17.33065 -17.15724 -16.30088 -15.84104 -15.33211 -15.10157 -14.70294 -14.09951
-13.90130 -13.87632 -13.60707 -13.40059 -13.18565 -12.68695 -12.60103 -12.50543
-12.22345 -11.91547 -11.62697 -11.39551 -11.27389 -11.15788 -10.98425 -10.86557
-10.52611 -10.33607 -10.12798 -9.70709 -8.90284 -7.69557 -7.63243 -6.25344
-4.70332 3.10288 3.17702 3.20835 3.68850 3.97369 4.04008 4.14835
4.29353 4.38817 4.52841 4.58803 4.78152 4.98063 4.99341 5.12641
5.20832 5.45573 5.55580 5.66414 5.68086 5.73302 5.87750 5.88095
6.07192 6.11679 6.34226 6.42431 7.37761 7.67545 7.81569 7.97184
8.23919 8.96706 9.41586 10.53132 10.71147
Molecular weight = 263.11amu
Principal moments of inertia in cm(-1)
A = 0.040175 B = 0.004430 C = 0.004280
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 696.777342 B = 6319.559672 C = 6539.882525
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.767 5.767
2 C 0.088 3.912
3 Si 0.908 3.092
4 H -0.273 1.273
5 H -0.279 1.279
6 H -0.265 1.265
7 C -0.547 4.547
8 H 0.068 0.932
9 C 0.555 3.445
10 O -0.579 6.579
11 N -0.767 5.767
12 C 0.110 3.890
13 C 0.123 3.877
14 O -0.557 6.557
15 C -0.145 4.145
16 C -0.152 4.152
17 C 0.287 3.713
18 F -0.206 7.206
19 F -0.201 7.201
20 C -0.151 4.151
21 C -0.102 4.102
22 H 0.269 0.731
23 H 0.376 0.624
24 H 0.060 0.940
25 H 0.058 0.942
26 H 0.379 0.621
27 H 0.084 0.916
28 H 0.086 0.914
29 H 0.099 0.901
30 H 0.084 0.916
31 H 0.102 0.898
32 H 0.084 0.916
33 H 0.087 0.913
34 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.265 -13.405 -2.466 15.940
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.395 5.395
2 C -0.132 4.132
3 Si 0.732 3.268
4 H -0.198 1.198
5 H -0.204 1.204
6 H -0.189 1.189
7 C -0.584 4.584
8 H 0.086 0.914
9 C 0.359 3.641
10 O -0.461 6.461
11 N -0.425 5.425
12 C -0.016 4.016
13 C 0.082 3.918
14 O -0.363 6.363
15 C -0.182 4.182
16 C -0.190 4.190
17 C 0.251 3.749
18 F -0.187 7.187
19 F -0.182 7.182
20 C -0.189 4.189
21 C -0.140 4.140
22 H 0.080 0.920
23 H 0.208 0.792
24 H 0.078 0.922
25 H 0.076 0.924
26 H 0.227 0.773
27 H 0.103 0.897
28 H 0.104 0.896
29 H 0.117 0.883
30 H 0.102 0.898
31 H 0.120 0.880
32 H 0.102 0.898
33 H 0.105 0.895
34 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 6.900 -13.925 -2.498 15.740
hybrid contribution 1.198 1.271 -0.234 1.762
sum 8.098 -12.654 -2.732 15.270
Atomic orbital electron populations
1.70017 1.07110 1.27373 1.35038 1.25701 0.94590 1.00329 0.92569
0.86360 0.80214 0.81491 0.78700 1.19796 1.20422 1.18884 1.20863
0.94046 0.89554 1.53936 0.91413 1.18229 0.87168 0.82303 0.76434
1.90610 1.14109 1.86292 1.55119 1.46185 1.08205 1.05830 1.82278
1.21519 0.94269 0.84145 1.01644 1.21464 0.91019 0.95142 0.84155
1.86447 1.65609 1.42721 1.41535 1.22202 0.97712 0.97930 1.00400
1.22434 0.99124 0.92576 1.04850 1.21189 0.84455 0.86379 0.82924
1.92987 1.68619 1.60557 1.96575 1.92986 1.78426 1.96378 1.50438
1.22424 0.98105 1.00434 0.97903 1.21461 0.97220 0.91614 1.03716
0.92038 0.79206 0.92217 0.92397 0.77256 0.89746 0.89580 0.88275
0.89753 0.87956 0.89760 0.89463 0.89495
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -22.67 11.85 55.55 0.66 -22.01 16
2 C 0.09 2.41 5.49 -17.37 -0.10 2.31 16
3 Si 0.91 19.67 29.56 -169.99 -5.03 14.64 16
4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16
5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16
6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16
7 C -0.55 -14.94 9.53 -35.64 -0.34 -15.28 16
8 H 0.07 1.68 7.86 -52.48 -0.41 1.26 16
9 C 0.55 15.21 7.74 -12.99 -0.10 15.11 16
10 O -0.58 -18.42 15.05 5.20 0.08 -18.34 16
11 N -0.77 -15.73 5.02 -61.72 -0.31 -16.04 16
12 C 0.11 1.96 4.84 -4.04 -0.02 1.94 16
13 C 0.12 1.61 0.71 -90.62 -0.06 1.55 16
14 O -0.56 -7.08 11.63 -35.23 -0.41 -7.49 16
15 C -0.14 -1.73 4.57 -26.73 -0.12 -1.85 16
16 C -0.15 -1.61 5.31 -26.73 -0.14 -1.75 16
17 C 0.29 3.33 2.10 -26.73 -0.06 3.28 16
18 F -0.21 -2.59 17.06 2.25 0.04 -2.55 16
19 F -0.20 -2.64 16.03 2.25 0.04 -2.61 16
20 C -0.15 -1.60 5.31 -26.71 -0.14 -1.74 16
21 C -0.10 -1.20 4.83 -26.71 -0.13 -1.32 16
22 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16
23 H 0.38 6.46 6.34 -40.82 -0.26 6.20 16
24 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16
25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
26 H 0.38 4.22 8.19 45.56 0.37 4.59 16
27 H 0.08 1.09 7.80 -51.93 -0.41 0.68 16
28 H 0.09 1.01 6.57 -51.93 -0.34 0.67 16
29 H 0.10 0.97 7.68 -51.93 -0.40 0.57 16
30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
31 H 0.10 1.07 7.68 -51.92 -0.40 0.67 16
32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
34 H 0.09 1.00 7.80 -51.93 -0.41 0.60 16
LS Contribution 286.89 15.07 4.32 4.32
Total: -1.00 -33.67 286.89 -5.32 -38.98
By element:
Atomic # 1 Polarization: 12.33 SS G_CDS: -3.50 Total: 8.84 kcal
Atomic # 6 Polarization: 3.45 SS G_CDS: -1.21 Total: 2.24 kcal
Atomic # 7 Polarization: -38.40 SS G_CDS: 0.35 Total: -38.05 kcal
Atomic # 8 Polarization: -25.49 SS G_CDS: -0.33 Total: -25.82 kcal
Atomic # 9 Polarization: -5.23 SS G_CDS: 0.07 Total: -5.15 kcal
Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -33.67 -5.32 -38.98 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598423973.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -169.710 kcal
(2) G-P(sol) polarization free energy of solvation -33.666 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.376 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal
(6) G-S(sol) free energy of system = (1) + (5) -208.693 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds