Wall clock time and date at job start Mon Mar 30 2020 05:26:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30673 * 1
3 3 Si 1.86806 * 119.99618 * 2 1
4 4 H 1.48491 * 109.46959 * 274.98177 * 3 2 1
5 5 H 1.48503 * 109.46978 * 34.98250 * 3 2 1
6 6 H 1.48502 * 109.47036 * 154.98035 * 3 2 1
7 7 C 1.40043 * 120.00127 * 179.97438 * 2 1 3
8 8 H 1.08006 * 119.99708 * 186.15283 * 7 2 1
9 9 C 1.46367 * 120.00227 * 6.15629 * 7 2 1
10 10 O 1.21690 * 120.00248 * 353.93322 * 9 7 2
11 11 N 1.34783 * 120.00162 * 173.66232 * 9 7 2
12 12 C 1.46497 * 120.00084 * 179.97438 * 11 9 7
13 13 C 1.52999 * 109.47218 * 179.97438 * 12 11 9
14 14 O 1.42904 * 109.47245 * 64.99592 * 13 12 11
15 15 C 1.53011 * 109.46936 * 305.00047 * 13 12 11
16 16 C 1.52999 * 109.46936 * 179.97438 * 15 13 12
17 17 C 1.52996 * 109.47186 * 59.99864 * 16 15 13
18 18 F 1.39904 * 109.46985 * 179.97438 * 17 16 15
19 19 F 1.39896 * 109.47152 * 60.00043 * 17 16 15
20 20 C 1.52998 * 109.47504 * 299.99784 * 17 16 15
21 21 C 1.52996 * 109.47560 * 184.99920 * 13 12 11
22 22 H 0.96994 * 120.00710 * 0.02562 * 1 2 3
23 23 H 0.96998 * 119.99823 * 359.97438 * 11 9 7
24 24 H 1.08998 * 109.47166 * 299.99854 * 12 11 9
25 25 H 1.09000 * 109.47161 * 59.99891 * 12 11 9
26 26 H 0.96701 * 114.00113 * 300.00285 * 14 13 12
27 27 H 1.08999 * 109.46995 * 299.99560 * 15 13 12
28 28 H 1.08996 * 109.46971 * 59.99652 * 15 13 12
29 29 H 1.08999 * 109.46919 * 299.99606 * 16 15 13
30 30 H 1.08997 * 109.46894 * 179.97438 * 16 15 13
31 31 H 1.09007 * 109.47269 * 300.00536 * 20 17 16
32 32 H 1.08995 * 109.47901 * 180.02562 * 20 17 16
33 33 H 1.08997 * 109.47098 * 299.99974 * 21 13 12
34 34 H 1.09003 * 109.47131 * 59.99430 * 21 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6179 0.0000
4 1 2.3828 2.1073 -1.3947
5 1 1.4946 2.6200 0.8027
6 1 3.5869 1.4123 0.5921
7 6 2.0070 -1.2128 0.0005
8 1 3.0824 -1.2154 0.1008
9 6 1.2815 -2.4768 -0.1348
10 8 0.0647 -2.4828 -0.1368
11 7 1.9613 -3.6336 -0.2628
12 6 1.2352 -4.8988 -0.3977
13 6 2.2353 -6.0495 -0.5268
14 8 2.9823 -6.1697 0.6856
15 6 3.1903 -5.7673 -1.6884
16 6 4.1908 -6.9177 -1.8171
17 6 3.4366 -8.2222 -2.0822
18 9 4.3515 -9.2740 -2.2005
19 9 2.7055 -8.1051 -3.2692
20 6 2.4816 -8.5045 -0.9207
21 6 1.4807 -7.3537 -0.7923
22 1 -0.4851 0.8399 -0.0004
23 1 2.9313 -3.6284 -0.2656
24 1 0.6119 -5.0557 0.4826
25 1 0.6058 -4.8635 -1.2869
26 1 3.4867 -5.3778 0.9168
27 1 2.6206 -5.6757 -2.6131
28 1 3.7279 -4.8382 -1.4992
29 1 4.7605 -7.0089 -0.8923
30 1 4.8709 -6.7169 -2.6448
31 1 3.0513 -8.5956 0.0042
32 1 1.9447 -9.4340 -1.1094
33 1 0.8004 -7.5548 0.0352
34 1 0.9109 -7.2621 -1.7170
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000598423973.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:26:27
Heat of formation + Delta-G solvation = -234.357028 kcal
Electronic energy + Delta-G solvation = -20647.375207 eV
Core-core repulsion = 17020.902471 eV
Total energy + Delta-G solvation = -3626.472736 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.112 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-49.96291 -47.95894 -40.71987 -38.91572 -35.62519 -34.96397 -34.31193 -32.27307
-30.96984 -28.54545 -26.19361 -24.36989 -22.73680 -21.59542 -21.01052 -19.50205
-18.37157 -18.16912 -17.56059 -17.23319 -16.79124 -16.54857 -16.04360 -15.66067
-15.26165 -15.10400 -14.80247 -14.57560 -14.27126 -14.13488 -13.91886 -13.49168
-13.42868 -13.26842 -13.09495 -12.81773 -12.62024 -12.60274 -12.51298 -12.12906
-12.02190 -11.92405 -11.22889 -10.93282 -10.80395 -9.88460 -9.52567 -8.30107
-6.85029 1.41953 1.42461 1.58547 2.24699 2.47324 2.78633 2.97555
3.06205 3.23214 3.37123 3.42871 3.62502 3.73855 3.89059 3.96726
4.06502 4.30569 4.53402 4.59197 4.69329 4.75702 4.80958 4.86897
4.97131 5.00994 5.11437 5.25449 5.33115 5.85829 6.17987 6.24534
6.71390 6.87494 7.51899 8.48524 8.67073
Molecular weight = 263.11amu
Principal moments of inertia in cm(-1)
A = 0.040175 B = 0.004430 C = 0.004280
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 696.777342 B = 6319.559672 C = 6539.882525
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.823 5.823
2 C 0.029 3.971
3 Si 0.997 3.003
4 H -0.265 1.265
5 H -0.276 1.276
6 H -0.246 1.246
7 C -0.572 4.572
8 H 0.092 0.908
9 C 0.537 3.463
10 O -0.634 6.634
11 N -0.749 5.749
12 C 0.112 3.888
13 C 0.139 3.861
14 O -0.555 6.555
15 C -0.141 4.141
16 C -0.145 4.145
17 C 0.281 3.719
18 F -0.210 7.210
19 F -0.212 7.212
20 C -0.144 4.144
21 C -0.104 4.104
22 H 0.274 0.726
23 H 0.395 0.605
24 H 0.038 0.962
25 H 0.041 0.959
26 H 0.387 0.613
27 H 0.074 0.926
28 H 0.090 0.910
29 H 0.113 0.887
30 H 0.095 0.905
31 H 0.109 0.891
32 H 0.098 0.902
33 H 0.089 0.911
34 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.674 -13.452 -2.409 17.340
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.453 5.453
2 C -0.186 4.186
3 Si 0.817 3.183
4 H -0.189 1.189
5 H -0.201 1.201
6 H -0.168 1.168
7 C -0.609 4.609
8 H 0.110 0.890
9 C 0.341 3.659
10 O -0.521 6.521
11 N -0.405 5.405
12 C -0.014 4.014
13 C 0.098 3.902
14 O -0.362 6.362
15 C -0.179 4.179
16 C -0.183 4.183
17 C 0.245 3.755
18 F -0.191 7.191
19 F -0.193 7.193
20 C -0.181 4.181
21 C -0.142 4.142
22 H 0.084 0.916
23 H 0.230 0.770
24 H 0.056 0.944
25 H 0.059 0.941
26 H 0.237 0.763
27 H 0.092 0.908
28 H 0.108 0.892
29 H 0.131 0.869
30 H 0.113 0.887
31 H 0.127 0.873
32 H 0.116 0.884
33 H 0.108 0.892
34 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 9.373 -14.022 -2.440 17.042
hybrid contribution 0.432 1.209 -0.242 1.306
sum 9.806 -12.813 -2.682 16.356
Atomic orbital electron populations
1.70191 1.09639 1.28950 1.36503 1.26971 0.95435 1.05019 0.91195
0.85014 0.79034 0.75224 0.79070 1.18947 1.20060 1.16849 1.21434
0.95341 0.90095 1.53985 0.89019 1.18634 0.86756 0.84332 0.76129
1.90566 1.16471 1.87532 1.57566 1.45722 1.09108 1.05249 1.80443
1.21611 0.95249 0.84680 0.99816 1.21264 0.90254 0.93721 0.84987
1.86453 1.65388 1.43163 1.41240 1.22136 0.97678 0.98923 0.99170
1.22408 0.98646 0.91178 1.06056 1.21406 0.84638 0.86710 0.82744
1.92980 1.68760 1.60801 1.96586 1.92970 1.78727 1.96433 1.51178
1.22385 0.97692 1.00295 0.97765 1.21473 0.97549 0.91302 1.03849
0.91617 0.76967 0.94409 0.94077 0.76338 0.90754 0.89161 0.86860
0.88664 0.87262 0.88368 0.89193 0.89579
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -49.85 11.85 21.83 0.26 -49.59 16
2 C 0.03 1.57 5.49 85.30 0.47 2.04 16
3 Si 1.00 39.76 29.56 68.60 2.03 41.79 16
4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16
5 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16
6 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16
7 C -0.57 -31.14 9.53 24.83 0.24 -30.90 16
8 H 0.09 4.38 7.86 -2.91 -0.02 4.35 16
9 C 0.54 30.06 7.74 86.36 0.67 30.73 16
10 O -0.63 -41.99 15.05 -4.32 -0.06 -42.05 16
11 N -0.75 -30.71 5.02 -467.41 -2.35 -33.06 16
12 C 0.11 4.05 4.84 86.38 0.42 4.46 16
13 C 0.14 3.48 0.71 -10.79 -0.01 3.48 16
14 O -0.55 -12.96 11.63 -148.98 -1.73 -14.69 16
15 C -0.14 -3.14 4.57 30.60 0.14 -3.00 16
16 C -0.15 -2.70 5.31 30.59 0.16 -2.54 16
17 C 0.28 5.93 2.10 30.59 0.06 5.99 16
18 F -0.21 -4.79 17.06 44.97 0.77 -4.02 16
19 F -0.21 -5.25 16.03 44.97 0.72 -4.53 16
20 C -0.14 -2.72 5.31 30.61 0.16 -2.56 16
21 C -0.10 -2.30 4.83 30.61 0.15 -2.15 16
22 H 0.27 15.04 8.29 -92.71 -0.77 14.27 16
23 H 0.39 13.08 6.34 -92.71 -0.59 12.49 16
24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16
26 H 0.39 7.71 8.19 -74.06 -0.61 7.10 16
27 H 0.07 1.84 7.80 -2.39 -0.02 1.82 16
28 H 0.09 1.92 6.57 -2.39 -0.02 1.91 16
29 H 0.11 1.83 7.68 -2.39 -0.02 1.81 16
30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16
31 H 0.11 1.96 7.68 -2.38 -0.02 1.94 16
32 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16
33 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16
34 H 0.09 1.93 7.80 -2.39 -0.02 1.91 16
Total: -1.00 -74.48 286.89 2.04 -72.44
By element:
Atomic # 1 Polarization: 28.21 SS G_CDS: -0.05 Total: 28.16 kcal
Atomic # 6 Polarization: 3.09 SS G_CDS: 2.46 Total: 5.55 kcal
Atomic # 7 Polarization: -80.56 SS G_CDS: -2.09 Total: -82.65 kcal
Atomic # 8 Polarization: -54.95 SS G_CDS: -1.80 Total: -56.75 kcal
Atomic # 9 Polarization: -10.04 SS G_CDS: 1.49 Total: -8.55 kcal
Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal
Total: -74.48 2.04 -72.44 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598423973.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -161.916 kcal
(2) G-P(sol) polarization free energy of solvation -74.479 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.395 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -234.357 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds