Wall clock time and date at job start Mon Mar 30 2020 05:10:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34949 * 126.03273 * 2 1
4 4 C 1.35323 * 107.74228 * 180.14452 * 3 2 1
5 5 C 1.50698 * 126.03933 * 179.87239 * 4 3 2
6 6 N 1.46496 * 109.47130 * 269.71564 * 5 4 3
7 7 C 1.36935 * 120.00537 * 269.99860 * 6 5 4
8 8 H 1.08004 * 119.99740 * 326.05691 * 7 6 5
9 9 C 1.38807 * 120.00385 * 146.04804 * 7 6 5
10 10 N 1.31627 * 119.99811 * 337.27613 * 9 7 6
11 11 Si 1.86801 * 120.00170 * 157.27588 * 9 7 6
12 12 H 1.48501 * 109.47036 * 60.00268 * 11 9 7
13 13 H 1.48501 * 109.46896 * 180.02562 * 11 9 7
14 14 H 1.48493 * 109.46896 * 299.99982 * 11 9 7
15 15 C 1.46507 * 119.99990 * 90.00410 * 6 5 4
16 16 C 1.52998 * 109.47442 * 85.64941 * 15 6 5
17 17 F 1.39904 * 109.46902 * 60.00036 * 16 15 6
18 18 F 1.39892 * 109.47309 * 179.97438 * 16 15 6
19 19 F 1.39902 * 109.47316 * 300.00492 * 16 15 6
20 20 C 1.39869 * 107.91707 * 359.61077 * 4 3 2
21 21 N 1.30837 * 108.20558 * 0.24030 * 20 4 3
22 22 H 1.09001 * 109.47664 * 270.26379 * 1 2 3
23 23 H 1.09004 * 109.47415 * 30.25938 * 1 2 3
24 24 H 1.08998 * 109.47267 * 150.25927 * 1 2 3
25 25 H 1.07992 * 126.13334 * 359.97438 * 3 2 1
26 26 H 1.09002 * 109.46890 * 149.71595 * 5 4 3
27 27 H 1.09004 * 109.46882 * 29.71724 * 5 4 3
28 28 H 0.96996 * 119.99656 * 179.97438 * 10 9 7
29 29 H 1.09006 * 109.46931 * 325.65116 * 15 6 5
30 30 H 1.09000 * 109.47271 * 205.65365 * 15 6 5
31 31 H 1.08001 * 125.89470 * 180.26004 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2588 1.0913 0.0000
4 6 3.5437 0.6666 -0.0033
5 6 4.7679 1.5454 -0.0072
6 7 5.1649 1.8237 -1.3896
7 6 6.0419 0.9905 -2.0312
8 1 6.8320 0.5069 -1.4757
9 6 5.9155 0.7671 -3.3953
10 7 4.7569 0.9605 -3.9893
11 14 7.3896 0.1920 -4.3882
12 1 7.8689 -1.1084 -3.8547
13 1 6.9952 0.0289 -5.8105
14 1 8.4765 1.1988 -4.2887
15 6 4.6235 2.9936 -2.0857
16 6 5.4791 4.2203 -1.7630
17 9 6.7944 3.9950 -2.1830
18 9 4.9626 5.3373 -2.4282
19 9 5.4632 4.4500 -0.3830
20 6 3.5346 -0.7320 0.0037
21 7 2.2891 -1.1327 0.0057
22 1 -0.3634 0.0047 1.0276
23 1 -0.3634 0.8877 -0.5179
24 1 -0.3634 -0.8923 -0.5098
25 1 1.9281 2.1193 -0.0004
26 1 5.5820 1.0366 0.5092
27 1 4.5440 2.4826 0.5023
28 1 4.6687 0.8047 -4.9426
29 1 3.5987 3.1692 -1.7585
30 1 4.6360 2.8146 -3.1609
31 1 4.4054 -1.3709 0.0072
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000685984890.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:10:22
Heat of formation + Delta-G solvation = -55.255013 kcal
Electronic energy + Delta-G solvation = -20623.225084 eV
Core-core repulsion = 16913.351240 eV
Total energy + Delta-G solvation = -3709.873844 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.094 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-48.99916 -46.60947 -46.41824 -40.45576 -35.91703 -32.86148 -31.62720 -29.97598
-28.24750 -26.70844 -24.83600 -23.08065 -21.19815 -20.40315 -19.48113 -17.67159
-17.43009 -17.01834 -16.36914 -15.57616 -14.98376 -14.68832 -13.89915 -13.83359
-13.80601 -13.33016 -13.31144 -13.00961 -12.89616 -12.71754 -12.66629 -12.51027
-12.16538 -11.98183 -11.61919 -11.09995 -10.91322 -10.71736 -10.64497 -10.22499
-10.10322 -9.85070 -8.76512 -8.64582 -7.71655 -6.90385 -5.97684 -3.50123
2.51396 3.09217 3.34528 3.40960 3.43728 3.55851 3.93891 4.42104
4.93129 4.97216 5.14279 5.24739 5.33670 5.37317 5.39891 5.55573
5.71408 5.74454 6.05807 6.27712 6.36065 6.54163 6.72138 6.92567
7.12954 7.35191 7.63288 7.71319 8.26855 8.35290 8.93361 9.59054
10.11172 11.06351
Molecular weight = 263.09amu
Principal moments of inertia in cm(-1)
A = 0.016120 B = 0.008931 C = 0.006617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1736.550386 B = 3134.315943 C = 4230.754318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.110 3.890
2 N -0.388 5.388
3 C 0.043 3.957
4 C -0.218 4.218
5 C 0.206 3.794
6 N -0.557 5.557
7 C -0.262 4.262
8 H 0.072 0.928
9 C 0.016 3.984
10 N -0.885 5.885
11 Si 0.900 3.100
12 H -0.279 1.279
13 H -0.290 1.290
14 H -0.278 1.278
15 C 0.110 3.890
16 C 0.408 3.592
17 F -0.184 7.184
18 F -0.211 7.211
19 F -0.204 7.204
20 C 0.072 3.928
21 N -0.315 5.315
22 H 0.064 0.936
23 H 0.080 0.920
24 H 0.081 0.919
25 H 0.161 0.839
26 H 0.060 0.940
27 H 0.052 0.948
28 H 0.259 0.741
29 H 0.065 0.935
30 H 0.135 0.865
31 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.420 3.052 6.293 8.848
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.033 4.033
2 N -0.172 5.172
3 C -0.102 4.102
4 C -0.231 4.231
5 C 0.080 3.920
6 N -0.273 5.273
7 C -0.391 4.391
8 H 0.089 0.911
9 C -0.184 4.184
10 N -0.527 5.527
11 Si 0.729 3.271
12 H -0.205 1.205
13 H -0.216 1.216
14 H -0.204 1.204
15 C -0.021 4.021
16 C 0.351 3.649
17 F -0.165 7.165
18 F -0.193 7.193
19 F -0.186 7.186
20 C -0.115 4.115
21 N -0.136 5.136
22 H 0.083 0.917
23 H 0.098 0.902
24 H 0.100 0.900
25 H 0.178 0.822
26 H 0.079 0.921
27 H 0.070 0.930
28 H 0.069 0.931
29 H 0.083 0.917
30 H 0.152 0.848
31 H 0.193 0.807
Dipole moment (debyes) X Y Z Total
from point charges -6.383 2.000 6.140 9.080
hybrid contribution 1.238 0.709 -0.743 1.609
sum -5.145 2.710 5.397 7.933
Atomic orbital electron populations
1.21643 0.75585 1.03823 1.02219 1.48274 1.05826 1.04108 1.58957
1.22139 0.91168 0.92584 1.04310 1.21095 0.95625 0.94668 1.11709
1.19515 0.91068 0.94779 0.86632 1.43778 1.50504 1.22546 1.10487
1.19066 1.05348 1.23371 0.91344 0.91062 1.25137 0.96142 0.98580
0.98577 1.69924 1.21634 1.50410 1.10704 0.86400 0.82838 0.78901
0.78951 1.20488 1.21581 1.20445 1.22193 0.92749 0.82023 1.05179
1.23499 0.81567 0.86785 0.73085 1.93120 1.38969 1.94615 1.89803
1.93054 1.87068 1.57887 1.81259 1.93037 1.96695 1.95589 1.33233
1.23640 0.94433 0.95092 0.98300 1.77194 1.02085 1.08282 1.26076
0.91721 0.90169 0.90019 0.82178 0.92138 0.93007 0.93136 0.91696
0.84751 0.80728
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 1.28 11.47 59.85 0.69 1.97 16
2 N -0.39 -6.65 4.01 -68.16 -0.27 -6.92 16
3 C 0.04 0.76 11.40 -17.22 -0.20 0.56 16
4 C -0.22 -4.23 5.68 -105.05 -0.60 -4.83 16
5 C 0.21 4.08 5.93 -5.20 -0.03 4.05 16
6 N -0.56 -12.83 2.35 -174.61 -0.41 -13.24 16
7 C -0.26 -6.69 9.22 -15.06 -0.14 -6.83 16
8 H 0.07 1.81 7.93 -52.48 -0.42 1.39 16
9 C 0.02 0.43 4.92 -17.43 -0.09 0.34 16
10 N -0.89 -24.17 11.36 55.49 0.63 -23.53 16
11 Si 0.90 21.08 29.61 -169.99 -5.03 16.04 16
12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
15 C 0.11 2.43 5.28 -4.04 -0.02 2.41 16
16 C 0.41 8.53 3.29 37.16 0.12 8.65 16
17 F -0.18 -4.21 16.99 2.25 0.04 -4.17 16
18 F -0.21 -4.17 17.32 2.25 0.04 -4.13 16
19 F -0.20 -4.03 15.82 2.25 0.04 -4.00 16
20 C 0.07 1.42 11.96 -17.37 -0.21 1.22 16
21 N -0.31 -6.22 12.58 30.62 0.39 -5.83 16
22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
23 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16
24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
25 H 0.16 2.32 8.06 -52.49 -0.42 1.89 16
26 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16
27 H 0.05 0.94 6.86 -51.93 -0.36 0.58 16
28 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16
29 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16
30 H 0.14 3.36 5.35 -51.93 -0.28 3.08 16
31 H 0.18 3.21 8.06 -52.49 -0.42 2.79 16
LS Contribution 285.65 15.07 4.30 4.30
Total: -1.00 -29.74 285.65 -3.89 -33.63
By element:
Atomic # 1 Polarization: 3.46 SS G_CDS: -3.14 Total: 0.32 kcal
Atomic # 6 Polarization: 8.00 SS G_CDS: -0.47 Total: 7.53 kcal
Atomic # 7 Polarization: -49.86 SS G_CDS: 0.33 Total: -49.53 kcal
Atomic # 9 Polarization: -12.41 SS G_CDS: 0.11 Total: -12.30 kcal
Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.04 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -29.74 -3.89 -33.63 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000685984890.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.622 kcal
(2) G-P(sol) polarization free energy of solvation -29.742 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.890 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.633 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.255 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds