Wall clock time and date at job start Mon Mar 30 2020 05:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34949 * 126.03273 * 2 1 4 4 C 1.35323 * 107.74228 * 180.14452 * 3 2 1 5 5 C 1.50698 * 126.03933 * 179.87239 * 4 3 2 6 6 N 1.46496 * 109.47130 * 269.71564 * 5 4 3 7 7 C 1.36935 * 120.00537 * 269.99860 * 6 5 4 8 8 H 1.08004 * 119.99740 * 326.05691 * 7 6 5 9 9 C 1.38807 * 120.00385 * 146.04804 * 7 6 5 10 10 N 1.31627 * 119.99811 * 337.27613 * 9 7 6 11 11 Si 1.86801 * 120.00170 * 157.27588 * 9 7 6 12 12 H 1.48501 * 109.47036 * 60.00268 * 11 9 7 13 13 H 1.48501 * 109.46896 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.46896 * 299.99982 * 11 9 7 15 15 C 1.46507 * 119.99990 * 90.00410 * 6 5 4 16 16 C 1.52998 * 109.47442 * 85.64941 * 15 6 5 17 17 F 1.39904 * 109.46902 * 60.00036 * 16 15 6 18 18 F 1.39892 * 109.47309 * 179.97438 * 16 15 6 19 19 F 1.39902 * 109.47316 * 300.00492 * 16 15 6 20 20 C 1.39869 * 107.91707 * 359.61077 * 4 3 2 21 21 N 1.30837 * 108.20558 * 0.24030 * 20 4 3 22 22 H 1.09001 * 109.47664 * 270.26379 * 1 2 3 23 23 H 1.09004 * 109.47415 * 30.25938 * 1 2 3 24 24 H 1.08998 * 109.47267 * 150.25927 * 1 2 3 25 25 H 1.07992 * 126.13334 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.46890 * 149.71595 * 5 4 3 27 27 H 1.09004 * 109.46882 * 29.71724 * 5 4 3 28 28 H 0.96996 * 119.99656 * 179.97438 * 10 9 7 29 29 H 1.09006 * 109.46931 * 325.65116 * 15 6 5 30 30 H 1.09000 * 109.47271 * 205.65365 * 15 6 5 31 31 H 1.08001 * 125.89470 * 180.26004 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7679 1.5454 -0.0072 6 7 5.1649 1.8237 -1.3896 7 6 6.0419 0.9905 -2.0312 8 1 6.8320 0.5069 -1.4757 9 6 5.9155 0.7671 -3.3953 10 7 4.7569 0.9605 -3.9893 11 14 7.3896 0.1920 -4.3882 12 1 7.8689 -1.1084 -3.8547 13 1 6.9952 0.0289 -5.8105 14 1 8.4765 1.1988 -4.2887 15 6 4.6235 2.9936 -2.0857 16 6 5.4791 4.2203 -1.7630 17 9 6.7944 3.9950 -2.1830 18 9 4.9626 5.3373 -2.4282 19 9 5.4632 4.4500 -0.3830 20 6 3.5346 -0.7320 0.0037 21 7 2.2891 -1.1327 0.0057 22 1 -0.3634 0.0047 1.0276 23 1 -0.3634 0.8877 -0.5179 24 1 -0.3634 -0.8923 -0.5098 25 1 1.9281 2.1193 -0.0004 26 1 5.5820 1.0366 0.5092 27 1 4.5440 2.4826 0.5023 28 1 4.6687 0.8047 -4.9426 29 1 3.5987 3.1692 -1.7585 30 1 4.6360 2.8146 -3.1609 31 1 4.4054 -1.3709 0.0072 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685984890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:22 Heat of formation + Delta-G solvation = -55.255013 kcal Electronic energy + Delta-G solvation = -20623.225084 eV Core-core repulsion = 16913.351240 eV Total energy + Delta-G solvation = -3709.873844 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.99916 -46.60947 -46.41824 -40.45576 -35.91703 -32.86148 -31.62720 -29.97598 -28.24750 -26.70844 -24.83600 -23.08065 -21.19815 -20.40315 -19.48113 -17.67159 -17.43009 -17.01834 -16.36914 -15.57616 -14.98376 -14.68832 -13.89915 -13.83359 -13.80601 -13.33016 -13.31144 -13.00961 -12.89616 -12.71754 -12.66629 -12.51027 -12.16538 -11.98183 -11.61919 -11.09995 -10.91322 -10.71736 -10.64497 -10.22499 -10.10322 -9.85070 -8.76512 -8.64582 -7.71655 -6.90385 -5.97684 -3.50123 2.51396 3.09217 3.34528 3.40960 3.43728 3.55851 3.93891 4.42104 4.93129 4.97216 5.14279 5.24739 5.33670 5.37317 5.39891 5.55573 5.71408 5.74454 6.05807 6.27712 6.36065 6.54163 6.72138 6.92567 7.12954 7.35191 7.63288 7.71319 8.26855 8.35290 8.93361 9.59054 10.11172 11.06351 Molecular weight = 263.09amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.008931 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.550386 B = 3134.315943 C = 4230.754318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.388 5.388 3 C 0.043 3.957 4 C -0.218 4.218 5 C 0.206 3.794 6 N -0.557 5.557 7 C -0.262 4.262 8 H 0.072 0.928 9 C 0.016 3.984 10 N -0.885 5.885 11 Si 0.900 3.100 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.110 3.890 16 C 0.408 3.592 17 F -0.184 7.184 18 F -0.211 7.211 19 F -0.204 7.204 20 C 0.072 3.928 21 N -0.315 5.315 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.161 0.839 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.259 0.741 29 H 0.065 0.935 30 H 0.135 0.865 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 3.052 6.293 8.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.172 5.172 3 C -0.102 4.102 4 C -0.231 4.231 5 C 0.080 3.920 6 N -0.273 5.273 7 C -0.391 4.391 8 H 0.089 0.911 9 C -0.184 4.184 10 N -0.527 5.527 11 Si 0.729 3.271 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.204 1.204 15 C -0.021 4.021 16 C 0.351 3.649 17 F -0.165 7.165 18 F -0.193 7.193 19 F -0.186 7.186 20 C -0.115 4.115 21 N -0.136 5.136 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.178 0.822 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.383 2.000 6.140 9.080 hybrid contribution 1.238 0.709 -0.743 1.609 sum -5.145 2.710 5.397 7.933 Atomic orbital electron populations 1.21643 0.75585 1.03823 1.02219 1.48274 1.05826 1.04108 1.58957 1.22139 0.91168 0.92584 1.04310 1.21095 0.95625 0.94668 1.11709 1.19515 0.91068 0.94779 0.86632 1.43778 1.50504 1.22546 1.10487 1.19066 1.05348 1.23371 0.91344 0.91062 1.25137 0.96142 0.98580 0.98577 1.69924 1.21634 1.50410 1.10704 0.86400 0.82838 0.78901 0.78951 1.20488 1.21581 1.20445 1.22193 0.92749 0.82023 1.05179 1.23499 0.81567 0.86785 0.73085 1.93120 1.38969 1.94615 1.89803 1.93054 1.87068 1.57887 1.81259 1.93037 1.96695 1.95589 1.33233 1.23640 0.94433 0.95092 0.98300 1.77194 1.02085 1.08282 1.26076 0.91721 0.90169 0.90019 0.82178 0.92138 0.93007 0.93136 0.91696 0.84751 0.80728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.28 11.47 59.85 0.69 1.97 16 2 N -0.39 -6.65 4.01 -68.16 -0.27 -6.92 16 3 C 0.04 0.76 11.40 -17.22 -0.20 0.56 16 4 C -0.22 -4.23 5.68 -105.05 -0.60 -4.83 16 5 C 0.21 4.08 5.93 -5.20 -0.03 4.05 16 6 N -0.56 -12.83 2.35 -174.61 -0.41 -13.24 16 7 C -0.26 -6.69 9.22 -15.06 -0.14 -6.83 16 8 H 0.07 1.81 7.93 -52.48 -0.42 1.39 16 9 C 0.02 0.43 4.92 -17.43 -0.09 0.34 16 10 N -0.89 -24.17 11.36 55.49 0.63 -23.53 16 11 Si 0.90 21.08 29.61 -169.99 -5.03 16.04 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.11 2.43 5.28 -4.04 -0.02 2.41 16 16 C 0.41 8.53 3.29 37.16 0.12 8.65 16 17 F -0.18 -4.21 16.99 2.25 0.04 -4.17 16 18 F -0.21 -4.17 17.32 2.25 0.04 -4.13 16 19 F -0.20 -4.03 15.82 2.25 0.04 -4.00 16 20 C 0.07 1.42 11.96 -17.37 -0.21 1.22 16 21 N -0.31 -6.22 12.58 30.62 0.39 -5.83 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.16 2.32 8.06 -52.49 -0.42 1.89 16 26 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 27 H 0.05 0.94 6.86 -51.93 -0.36 0.58 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 29 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 30 H 0.14 3.36 5.35 -51.93 -0.28 3.08 16 31 H 0.18 3.21 8.06 -52.49 -0.42 2.79 16 LS Contribution 285.65 15.07 4.30 4.30 Total: -1.00 -29.74 285.65 -3.89 -33.63 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -3.14 Total: 0.32 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.47 Total: 7.53 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.33 Total: -49.53 kcal Atomic # 9 Polarization: -12.41 SS G_CDS: 0.11 Total: -12.30 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.74 -3.89 -33.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685984890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.622 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds