Wall clock time and date at job start Mon Mar 30 2020 05:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34949 * 126.03273 * 2 1 4 4 C 1.35323 * 107.74228 * 180.14452 * 3 2 1 5 5 C 1.50698 * 126.03933 * 179.87239 * 4 3 2 6 6 N 1.46496 * 109.47130 * 269.71564 * 5 4 3 7 7 C 1.36935 * 120.00537 * 269.99860 * 6 5 4 8 8 H 1.08004 * 119.99740 * 326.05691 * 7 6 5 9 9 C 1.38807 * 120.00385 * 146.04804 * 7 6 5 10 10 N 1.31627 * 119.99811 * 337.27613 * 9 7 6 11 11 Si 1.86801 * 120.00170 * 157.27588 * 9 7 6 12 12 H 1.48501 * 109.47036 * 60.00268 * 11 9 7 13 13 H 1.48501 * 109.46896 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.46896 * 299.99982 * 11 9 7 15 15 C 1.46507 * 119.99990 * 90.00410 * 6 5 4 16 16 C 1.52998 * 109.47442 * 85.64941 * 15 6 5 17 17 F 1.39904 * 109.46902 * 60.00036 * 16 15 6 18 18 F 1.39892 * 109.47309 * 179.97438 * 16 15 6 19 19 F 1.39902 * 109.47316 * 300.00492 * 16 15 6 20 20 C 1.39869 * 107.91707 * 359.61077 * 4 3 2 21 21 N 1.30837 * 108.20558 * 0.24030 * 20 4 3 22 22 H 1.09001 * 109.47664 * 270.26379 * 1 2 3 23 23 H 1.09004 * 109.47415 * 30.25938 * 1 2 3 24 24 H 1.08998 * 109.47267 * 150.25927 * 1 2 3 25 25 H 1.07992 * 126.13334 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.46890 * 149.71595 * 5 4 3 27 27 H 1.09004 * 109.46882 * 29.71724 * 5 4 3 28 28 H 0.96996 * 119.99656 * 179.97438 * 10 9 7 29 29 H 1.09006 * 109.46931 * 325.65116 * 15 6 5 30 30 H 1.09000 * 109.47271 * 205.65365 * 15 6 5 31 31 H 1.08001 * 125.89470 * 180.26004 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7679 1.5454 -0.0072 6 7 5.1649 1.8237 -1.3896 7 6 6.0419 0.9905 -2.0312 8 1 6.8320 0.5069 -1.4757 9 6 5.9155 0.7671 -3.3953 10 7 4.7569 0.9605 -3.9893 11 14 7.3896 0.1920 -4.3882 12 1 7.8689 -1.1084 -3.8547 13 1 6.9952 0.0289 -5.8105 14 1 8.4765 1.1988 -4.2887 15 6 4.6235 2.9936 -2.0857 16 6 5.4791 4.2203 -1.7630 17 9 6.7944 3.9950 -2.1830 18 9 4.9626 5.3373 -2.4282 19 9 5.4632 4.4500 -0.3830 20 6 3.5346 -0.7320 0.0037 21 7 2.2891 -1.1327 0.0057 22 1 -0.3634 0.0047 1.0276 23 1 -0.3634 0.8877 -0.5179 24 1 -0.3634 -0.8923 -0.5098 25 1 1.9281 2.1193 -0.0004 26 1 5.5820 1.0366 0.5092 27 1 4.5440 2.4826 0.5023 28 1 4.6687 0.8047 -4.9426 29 1 3.5987 3.1692 -1.7585 30 1 4.6360 2.8146 -3.1609 31 1 4.4054 -1.3709 0.0072 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685984890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:22 Heat of formation + Delta-G solvation = -72.267923 kcal Electronic energy + Delta-G solvation = -20623.962819 eV Core-core repulsion = 16913.351240 eV Total energy + Delta-G solvation = -3710.611579 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.67467 -48.23904 -48.14683 -41.83974 -37.66111 -34.23892 -33.37164 -31.54185 -29.85778 -28.12901 -26.42192 -24.74498 -22.92355 -21.75896 -20.93359 -19.40433 -19.12584 -18.78352 -17.84375 -17.13926 -16.64441 -16.18882 -15.57054 -15.48455 -15.19960 -15.03595 -14.93086 -14.67037 -14.41865 -14.39461 -14.26575 -13.89711 -13.37150 -13.34671 -13.22648 -12.86491 -12.68282 -12.51415 -12.28513 -12.05362 -11.93787 -11.33602 -10.58236 -10.12813 -9.14408 -8.74177 -7.93058 -5.46237 1.14403 1.47670 1.52313 1.57419 1.90025 2.03305 2.25446 2.53787 3.15110 3.39804 3.53866 3.56950 3.85817 4.04988 4.15482 4.46109 4.50931 4.58537 4.67778 4.71811 4.87956 5.05569 5.20783 5.35747 5.46222 5.70795 5.90706 6.35456 6.40351 6.92896 7.04202 7.71480 8.21545 9.08266 Molecular weight = 263.09amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.008931 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.550386 B = 3134.315943 C = 4230.754318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.385 5.385 3 C 0.053 3.947 4 C -0.245 4.245 5 C 0.210 3.790 6 N -0.569 5.569 7 C -0.261 4.261 8 H 0.067 0.933 9 C -0.025 4.025 10 N -0.910 5.910 11 Si 0.946 3.054 12 H -0.274 1.274 13 H -0.294 1.294 14 H -0.282 1.282 15 C 0.113 3.887 16 C 0.417 3.583 17 F -0.197 7.197 18 F -0.202 7.202 19 F -0.194 7.194 20 C 0.052 3.948 21 N -0.341 5.341 22 H 0.090 0.910 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.194 0.806 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.253 0.747 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 3.859 7.050 10.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.168 5.168 3 C -0.094 4.094 4 C -0.258 4.258 5 C 0.085 3.915 6 N -0.285 5.285 7 C -0.391 4.391 8 H 0.085 0.915 9 C -0.223 4.223 10 N -0.553 5.553 11 Si 0.775 3.225 12 H -0.200 1.200 13 H -0.221 1.221 14 H -0.208 1.208 15 C -0.018 4.018 16 C 0.359 3.641 17 F -0.179 7.179 18 F -0.184 7.184 19 F -0.176 7.176 20 C -0.134 4.134 21 N -0.164 5.164 22 H 0.108 0.892 23 H 0.125 0.875 24 H 0.101 0.899 25 H 0.211 0.789 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.396 2.797 6.923 10.510 hybrid contribution 1.451 0.498 -0.889 1.773 sum -5.946 3.296 6.034 9.089 Atomic orbital electron populations 1.22084 0.72515 1.05272 1.04379 1.48704 1.07596 1.03327 1.57215 1.22613 0.90617 0.93998 1.02152 1.21085 0.96405 0.94410 1.13892 1.19519 0.91393 0.95734 0.84851 1.43917 1.50603 1.22623 1.11407 1.19221 1.05532 1.22766 0.91534 0.91521 1.25634 0.97650 0.99602 0.99422 1.70024 1.22774 1.52182 1.10348 0.85666 0.80643 0.78547 0.77655 1.19985 1.22056 1.20781 1.22051 0.93901 0.82212 1.03669 1.23149 0.80717 0.86717 0.73482 1.93096 1.39993 1.94752 1.90040 1.93071 1.86852 1.57329 1.81161 1.93053 1.96600 1.95519 1.32396 1.23775 0.94784 0.95728 0.99077 1.77120 1.02365 1.09908 1.27041 0.89181 0.87502 0.89853 0.78896 0.92317 0.91206 0.93756 0.89661 0.87397 0.80822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.97 11.47 127.77 1.47 3.43 16 2 N -0.38 -12.31 4.01 -369.56 -1.48 -13.79 16 3 C 0.05 1.71 11.40 83.54 0.95 2.66 16 4 C -0.24 -9.19 5.68 -20.14 -0.11 -9.31 16 5 C 0.21 8.02 5.93 85.63 0.51 8.53 16 6 N -0.57 -25.64 2.35 -706.33 -1.66 -27.30 16 7 C -0.26 -13.23 9.22 84.03 0.78 -12.46 16 8 H 0.07 3.38 7.93 -2.91 -0.02 3.36 16 9 C -0.03 -1.33 4.92 84.86 0.42 -0.91 16 10 N -0.91 -49.88 11.36 21.65 0.25 -49.63 16 11 Si 0.95 43.43 29.61 68.60 2.03 45.46 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 15 C 0.11 4.84 5.28 86.38 0.46 5.30 16 16 C 0.42 16.71 3.29 71.98 0.24 16.95 16 17 F -0.20 -8.84 16.99 44.97 0.76 -8.08 16 18 F -0.20 -7.61 17.32 44.97 0.78 -6.83 16 19 F -0.19 -7.21 15.82 44.97 0.71 -6.50 16 20 C 0.05 2.04 11.96 85.24 1.02 3.06 16 21 N -0.34 -13.22 12.58 -57.02 -0.72 -13.94 16 22 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.19 4.77 8.06 -2.91 -0.02 4.75 16 26 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 27 H 0.07 2.37 6.86 -2.38 -0.02 2.35 16 28 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 29 H 0.09 3.25 8.10 -2.38 -0.02 3.23 16 30 H 0.11 5.36 5.35 -2.39 -0.01 5.35 16 31 H 0.17 6.55 8.06 -2.91 -0.02 6.52 16 Total: -1.00 -62.30 285.65 7.54 -54.76 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.15 Total: 8.60 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 5.72 Total: 17.25 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.61 Total: -104.65 kcal Atomic # 9 Polarization: -23.66 SS G_CDS: 2.25 Total: -21.40 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -62.30 7.54 -54.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685984890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.511 kcal (2) G-P(sol) polarization free energy of solvation -62.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds