Wall clock time and date at job start Mon Mar 30 2020 05:10:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34949 * 126.03273 * 2 1
4 4 C 1.35323 * 107.74228 * 180.14452 * 3 2 1
5 5 C 1.50698 * 126.03933 * 179.87239 * 4 3 2
6 6 N 1.46496 * 109.47130 * 269.71564 * 5 4 3
7 7 C 1.36935 * 120.00537 * 269.99860 * 6 5 4
8 8 H 1.08004 * 119.99740 * 326.05691 * 7 6 5
9 9 C 1.38807 * 120.00385 * 146.04804 * 7 6 5
10 10 N 1.31627 * 119.99811 * 337.27613 * 9 7 6
11 11 Si 1.86801 * 120.00170 * 157.27588 * 9 7 6
12 12 H 1.48501 * 109.47036 * 60.00268 * 11 9 7
13 13 H 1.48501 * 109.46896 * 180.02562 * 11 9 7
14 14 H 1.48493 * 109.46896 * 299.99982 * 11 9 7
15 15 C 1.46507 * 119.99990 * 90.00410 * 6 5 4
16 16 C 1.52998 * 109.47442 * 85.64941 * 15 6 5
17 17 F 1.39904 * 109.46902 * 60.00036 * 16 15 6
18 18 F 1.39892 * 109.47309 * 179.97438 * 16 15 6
19 19 F 1.39902 * 109.47316 * 300.00492 * 16 15 6
20 20 C 1.39869 * 107.91707 * 359.61077 * 4 3 2
21 21 N 1.30837 * 108.20558 * 0.24030 * 20 4 3
22 22 H 1.09001 * 109.47664 * 270.26379 * 1 2 3
23 23 H 1.09004 * 109.47415 * 30.25938 * 1 2 3
24 24 H 1.08998 * 109.47267 * 150.25927 * 1 2 3
25 25 H 1.07992 * 126.13334 * 359.97438 * 3 2 1
26 26 H 1.09002 * 109.46890 * 149.71595 * 5 4 3
27 27 H 1.09004 * 109.46882 * 29.71724 * 5 4 3
28 28 H 0.96996 * 119.99656 * 179.97438 * 10 9 7
29 29 H 1.09006 * 109.46931 * 325.65116 * 15 6 5
30 30 H 1.09000 * 109.47271 * 205.65365 * 15 6 5
31 31 H 1.08001 * 125.89470 * 180.26004 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2588 1.0913 0.0000
4 6 3.5437 0.6666 -0.0033
5 6 4.7679 1.5454 -0.0072
6 7 5.1649 1.8237 -1.3896
7 6 6.0419 0.9905 -2.0312
8 1 6.8320 0.5069 -1.4757
9 6 5.9155 0.7671 -3.3953
10 7 4.7569 0.9605 -3.9893
11 14 7.3896 0.1920 -4.3882
12 1 7.8689 -1.1084 -3.8547
13 1 6.9952 0.0289 -5.8105
14 1 8.4765 1.1988 -4.2887
15 6 4.6235 2.9936 -2.0857
16 6 5.4791 4.2203 -1.7630
17 9 6.7944 3.9950 -2.1830
18 9 4.9626 5.3373 -2.4282
19 9 5.4632 4.4500 -0.3830
20 6 3.5346 -0.7320 0.0037
21 7 2.2891 -1.1327 0.0057
22 1 -0.3634 0.0047 1.0276
23 1 -0.3634 0.8877 -0.5179
24 1 -0.3634 -0.8923 -0.5098
25 1 1.9281 2.1193 -0.0004
26 1 5.5820 1.0366 0.5092
27 1 4.5440 2.4826 0.5023
28 1 4.6687 0.8047 -4.9426
29 1 3.5987 3.1692 -1.7585
30 1 4.6360 2.8146 -3.1609
31 1 4.4054 -1.3709 0.0072
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000685984890.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:10:22
Heat of formation + Delta-G solvation = -72.267923 kcal
Electronic energy + Delta-G solvation = -20623.962819 eV
Core-core repulsion = 16913.351240 eV
Total energy + Delta-G solvation = -3710.611579 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.094 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-50.67467 -48.23904 -48.14683 -41.83974 -37.66111 -34.23892 -33.37164 -31.54185
-29.85778 -28.12901 -26.42192 -24.74498 -22.92355 -21.75896 -20.93359 -19.40433
-19.12584 -18.78352 -17.84375 -17.13926 -16.64441 -16.18882 -15.57054 -15.48455
-15.19960 -15.03595 -14.93086 -14.67037 -14.41865 -14.39461 -14.26575 -13.89711
-13.37150 -13.34671 -13.22648 -12.86491 -12.68282 -12.51415 -12.28513 -12.05362
-11.93787 -11.33602 -10.58236 -10.12813 -9.14408 -8.74177 -7.93058 -5.46237
1.14403 1.47670 1.52313 1.57419 1.90025 2.03305 2.25446 2.53787
3.15110 3.39804 3.53866 3.56950 3.85817 4.04988 4.15482 4.46109
4.50931 4.58537 4.67778 4.71811 4.87956 5.05569 5.20783 5.35747
5.46222 5.70795 5.90706 6.35456 6.40351 6.92896 7.04202 7.71480
8.21545 9.08266
Molecular weight = 263.09amu
Principal moments of inertia in cm(-1)
A = 0.016120 B = 0.008931 C = 0.006617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1736.550386 B = 3134.315943 C = 4230.754318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.098 3.902
2 N -0.385 5.385
3 C 0.053 3.947
4 C -0.245 4.245
5 C 0.210 3.790
6 N -0.569 5.569
7 C -0.261 4.261
8 H 0.067 0.933
9 C -0.025 4.025
10 N -0.910 5.910
11 Si 0.946 3.054
12 H -0.274 1.274
13 H -0.294 1.294
14 H -0.282 1.282
15 C 0.113 3.887
16 C 0.417 3.583
17 F -0.197 7.197
18 F -0.202 7.202
19 F -0.194 7.194
20 C 0.052 3.948
21 N -0.341 5.341
22 H 0.090 0.910
23 H 0.107 0.893
24 H 0.083 0.917
25 H 0.194 0.806
26 H 0.058 0.942
27 H 0.070 0.930
28 H 0.253 0.747
29 H 0.085 0.915
30 H 0.109 0.891
31 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.420 3.859 7.050 10.286
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.042 4.042
2 N -0.168 5.168
3 C -0.094 4.094
4 C -0.258 4.258
5 C 0.085 3.915
6 N -0.285 5.285
7 C -0.391 4.391
8 H 0.085 0.915
9 C -0.223 4.223
10 N -0.553 5.553
11 Si 0.775 3.225
12 H -0.200 1.200
13 H -0.221 1.221
14 H -0.208 1.208
15 C -0.018 4.018
16 C 0.359 3.641
17 F -0.179 7.179
18 F -0.184 7.184
19 F -0.176 7.176
20 C -0.134 4.134
21 N -0.164 5.164
22 H 0.108 0.892
23 H 0.125 0.875
24 H 0.101 0.899
25 H 0.211 0.789
26 H 0.077 0.923
27 H 0.088 0.912
28 H 0.062 0.938
29 H 0.103 0.897
30 H 0.126 0.874
31 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges -7.396 2.797 6.923 10.510
hybrid contribution 1.451 0.498 -0.889 1.773
sum -5.946 3.296 6.034 9.089
Atomic orbital electron populations
1.22084 0.72515 1.05272 1.04379 1.48704 1.07596 1.03327 1.57215
1.22613 0.90617 0.93998 1.02152 1.21085 0.96405 0.94410 1.13892
1.19519 0.91393 0.95734 0.84851 1.43917 1.50603 1.22623 1.11407
1.19221 1.05532 1.22766 0.91534 0.91521 1.25634 0.97650 0.99602
0.99422 1.70024 1.22774 1.52182 1.10348 0.85666 0.80643 0.78547
0.77655 1.19985 1.22056 1.20781 1.22051 0.93901 0.82212 1.03669
1.23149 0.80717 0.86717 0.73482 1.93096 1.39993 1.94752 1.90040
1.93071 1.86852 1.57329 1.81161 1.93053 1.96600 1.95519 1.32396
1.23775 0.94784 0.95728 0.99077 1.77120 1.02365 1.09908 1.27041
0.89181 0.87502 0.89853 0.78896 0.92317 0.91206 0.93756 0.89661
0.87397 0.80822
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.97 11.47 127.77 1.47 3.43 16
2 N -0.38 -12.31 4.01 -369.56 -1.48 -13.79 16
3 C 0.05 1.71 11.40 83.54 0.95 2.66 16
4 C -0.24 -9.19 5.68 -20.14 -0.11 -9.31 16
5 C 0.21 8.02 5.93 85.63 0.51 8.53 16
6 N -0.57 -25.64 2.35 -706.33 -1.66 -27.30 16
7 C -0.26 -13.23 9.22 84.03 0.78 -12.46 16
8 H 0.07 3.38 7.93 -2.91 -0.02 3.36 16
9 C -0.03 -1.33 4.92 84.86 0.42 -0.91 16
10 N -0.91 -49.88 11.36 21.65 0.25 -49.63 16
11 Si 0.95 43.43 29.61 68.60 2.03 45.46 16
12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16
13 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16
14 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16
15 C 0.11 4.84 5.28 86.38 0.46 5.30 16
16 C 0.42 16.71 3.29 71.98 0.24 16.95 16
17 F -0.20 -8.84 16.99 44.97 0.76 -8.08 16
18 F -0.20 -7.61 17.32 44.97 0.78 -6.83 16
19 F -0.19 -7.21 15.82 44.97 0.71 -6.50 16
20 C 0.05 2.04 11.96 85.24 1.02 3.06 16
21 N -0.34 -13.22 12.58 -57.02 -0.72 -13.94 16
22 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
23 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16
24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
25 H 0.19 4.77 8.06 -2.91 -0.02 4.75 16
26 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16
27 H 0.07 2.37 6.86 -2.38 -0.02 2.35 16
28 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16
29 H 0.09 3.25 8.10 -2.38 -0.02 3.23 16
30 H 0.11 5.36 5.35 -2.39 -0.01 5.35 16
31 H 0.17 6.55 8.06 -2.91 -0.02 6.52 16
Total: -1.00 -62.30 285.65 7.54 -54.76
By element:
Atomic # 1 Polarization: 7.44 SS G_CDS: 1.15 Total: 8.60 kcal
Atomic # 6 Polarization: 11.53 SS G_CDS: 5.72 Total: 17.25 kcal
Atomic # 7 Polarization: -101.04 SS G_CDS: -3.61 Total: -104.65 kcal
Atomic # 9 Polarization: -23.66 SS G_CDS: 2.25 Total: -21.40 kcal
Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal
Total: -62.30 7.54 -54.76 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000685984890.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.511 kcal
(2) G-P(sol) polarization free energy of solvation -62.299 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.811 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.543 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.757 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.268 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds