Wall clock time and date at job start Mon Mar 30 2020 04:29:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53000 * 109.46888 * 2 1
4 4 H 1.08993 * 109.51549 * 55.09718 * 3 2 1
5 5 C 1.53719 * 109.48260 * 175.36507 * 3 2 1
6 6 N 1.47147 * 108.16059 * 172.39710 * 5 3 2
7 7 S 1.65601 * 120.98249 * 129.42869 * 6 5 3
8 8 O 1.42102 * 106.40098 * 156.17736 * 7 6 5
9 9 O 1.42098 * 106.40172 * 23.25825 * 7 6 5
10 10 C 1.76193 * 107.21727 * 269.71561 * 7 6 5
11 11 H 1.07999 * 120.00769 * 0.02562 * 10 7 6
12 12 C 1.37881 * 119.99923 * 179.97438 * 10 7 6
13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 7
14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 7
15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10
16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10
17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10
18 18 C 1.47155 * 118.03752 * 309.15388 * 6 5 3
19 19 C 1.53295 * 108.38221 * 50.78759 * 18 6 5
20 20 H 1.09003 * 109.51247 * 187.72282 * 19 18 6
21 21 C 1.52996 * 109.51490 * 67.62193 * 19 18 6
22 22 O 1.42962 * 109.51081 * 294.99469 * 3 2 1
23 23 H 1.08998 * 109.47395 * 60.00163 * 1 2 3
24 24 H 1.09002 * 109.47439 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.47448 * 300.00038 * 1 2 3
26 26 H 1.08998 * 109.47292 * 239.99434 * 2 1 3
27 27 H 1.08999 * 109.47091 * 119.99382 * 2 1 3
28 28 H 1.09001 * 109.83765 * 52.71334 * 5 3 2
29 29 H 1.08994 * 109.74248 * 292.02164 * 5 3 2
30 30 H 0.96998 * 120.00124 * 180.02562 * 13 12 10
31 31 H 1.08999 * 109.68703 * 170.51223 * 18 6 5
32 32 H 1.09000 * 109.67955 * 291.06735 * 18 6 5
33 33 H 1.09002 * 109.47118 * 60.00088 * 21 19 18
34 34 H 1.08996 * 109.47404 * 179.97438 * 21 19 18
35 35 H 1.08999 * 109.47521 * 300.00417 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6071 1.9817 0.8425
5 6 3.5726 1.4445 0.1171
6 7 4.0451 2.8254 -0.0697
7 16 5.0874 3.5234 1.0115
8 8 5.7636 4.5561 0.3075
9 8 5.7625 2.4567 1.6639
10 6 4.1078 4.3186 2.2413
11 1 3.0302 4.2802 2.1816
12 6 4.7171 4.9892 3.2806
13 7 3.9859 5.5824 4.1989
14 14 6.5810 5.0552 3.3845
15 1 7.0756 6.2490 2.6526
16 1 7.1545 3.8284 2.7752
17 1 6.9948 5.1408 4.8081
18 6 3.5690 3.5659 -1.2489
19 6 2.0407 3.4587 -1.3024
20 1 1.6786 3.8822 -2.2392
21 6 1.4331 4.2258 -0.1263
22 8 1.6622 2.0825 -1.2213
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3634 -1.0277 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 1.8933 -0.5139 -0.8899
27 1 1.8933 -0.5137 0.8900
28 1 4.0031 0.8020 -0.6511
29 1 3.8670 1.0860 1.1034
30 1 4.4145 6.0544 4.9299
31 1 3.8609 4.6129 -1.1676
32 1 3.9991 3.1334 -2.1522
33 1 1.7258 5.2741 -0.1862
34 1 0.3465 4.1496 -0.1652
35 1 1.7942 3.8008 0.8102
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000689145882.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:29:57
Heat of formation + Delta-G solvation = -129.251904 kcal
Electronic energy + Delta-G solvation = -19681.214138 eV
Core-core repulsion = 16613.139489 eV
Total energy + Delta-G solvation = -3068.074649 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.44876 -35.78129 -34.52755 -34.43675 -33.98822 -33.05924 -30.85252 -28.13375
-26.42616 -25.48830 -23.58601 -21.69184 -19.62562 -18.60666 -17.63978 -16.85404
-16.40093 -15.46738 -15.28275 -15.09087 -14.31843 -14.02324 -13.68918 -13.55801
-13.42479 -13.24526 -12.86520 -12.06152 -11.89048 -11.74964 -11.68737 -11.57843
-11.39819 -11.03745 -10.93922 -10.80355 -10.76248 -10.63547 -10.48849 -10.05553
-9.78687 -9.74562 -9.24448 -9.01233 -8.14218 -6.83846 -5.38065 1.93449
3.04068 3.14396 3.23822 3.91879 3.95242 4.08255 4.54965 4.88545
5.07731 5.19533 5.25436 5.28260 5.41045 5.46934 5.47150 5.66111
5.73561 5.81356 5.89532 5.99423 6.01917 6.03596 6.11974 6.19992
6.20761 6.29731 6.40135 6.61008 6.68171 7.25699 7.44945 7.48248
8.18788 8.67210 10.27940
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.027705 B = 0.007870 C = 0.007748
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1010.407459 B = 3556.801302 C = 3612.850363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.115 4.115
3 C 0.072 3.928
4 H 0.072 0.928
5 C 0.100 3.900
6 N -1.003 6.003
7 S 2.673 3.327
8 O -1.008 7.008
9 O -1.006 7.006
10 C -1.016 5.016
11 H 0.125 0.875
12 C 0.155 3.845
13 N -0.822 5.822
14 Si 0.799 3.201
15 H -0.246 1.246
16 H -0.221 1.221
17 H -0.254 1.254
18 C 0.098 3.902
19 C 0.077 3.923
20 H 0.106 0.894
21 C -0.191 4.191
22 O -0.373 6.373
23 H 0.060 0.940
24 H 0.050 0.950
25 H 0.052 0.948
26 H 0.069 0.931
27 H 0.078 0.922
28 H 0.067 0.933
29 H 0.098 0.902
30 H 0.281 0.719
31 H 0.099 0.901
32 H 0.067 0.933
33 H 0.070 0.930
34 H 0.057 0.943
35 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.648 -6.580 -8.089 11.858
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.153 4.153
3 C 0.012 3.988
4 H 0.090 0.910
5 C -0.027 4.027
6 N -0.839 5.839
7 S 2.777 3.223
8 O -0.998 6.998
9 O -0.996 6.996
10 C -1.150 5.150
11 H 0.143 0.857
12 C -0.065 4.065
13 N -0.450 5.450
14 Si 0.619 3.381
15 H -0.170 1.170
16 H -0.143 1.143
17 H -0.178 1.178
18 C -0.028 4.028
19 C 0.018 3.982
20 H 0.123 0.877
21 C -0.248 4.248
22 O -0.293 6.293
23 H 0.079 0.921
24 H 0.070 0.930
25 H 0.072 0.928
26 H 0.088 0.912
27 H 0.096 0.904
28 H 0.085 0.915
29 H 0.116 0.884
30 H 0.091 0.909
31 H 0.117 0.883
32 H 0.085 0.915
33 H 0.089 0.911
34 H 0.076 0.924
35 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -4.812 -6.621 -8.149 11.550
hybrid contribution 0.277 0.598 0.763 1.008
sum -4.535 -6.023 -7.386 10.555
Atomic orbital electron populations
1.21692 0.95328 1.01126 1.02329 1.21513 0.96651 0.94369 1.02770
1.22636 0.93872 0.93896 0.88355 0.90973 1.22017 0.94286 0.83145
1.03216 1.57799 1.66187 1.21695 1.38183 1.01530 0.73470 0.73566
0.73775 1.93398 1.73649 1.57943 1.74827 1.93453 1.73471 1.57640
1.75036 1.30569 1.09145 1.49614 1.25681 0.85742 1.24407 0.98749
0.90444 0.92882 1.69984 1.37009 1.27426 1.10630 0.87906 0.85113
0.83581 0.81512 1.17019 1.14275 1.17842 1.21950 0.94379 0.97991
0.88496 1.22523 0.93841 0.82311 0.99505 0.87660 1.22503 1.00726
1.01478 1.00074 1.87895 1.79829 1.23422 1.38104 0.92061 0.93048
0.92842 0.91187 0.90360 0.91482 0.88407 0.90893 0.88311 0.91502
0.91065 0.92373 0.90454
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.63 9.81 37.16 0.36 -1.26 16
2 C -0.12 -1.39 5.65 -26.73 -0.15 -1.54 16
3 C 0.07 1.08 2.40 -26.36 -0.06 1.02 16
4 H 0.07 1.17 6.25 -51.93 -0.32 0.85 16
5 C 0.10 1.70 5.89 -3.32 -0.02 1.68 16
6 N -1.00 -19.84 2.85 -112.82 -0.32 -20.16 16
7 S 2.67 66.75 4.20 -107.50 -0.45 66.30 16
8 O -1.01 -26.76 15.64 -57.17 -0.89 -27.66 16
9 O -1.01 -26.84 14.81 -57.17 -0.85 -27.68 16
10 C -1.02 -27.61 10.29 30.60 0.31 -27.30 16
11 H 0.12 3.36 6.20 -52.49 -0.33 3.04 16
12 C 0.15 4.37 5.47 -17.82 -0.10 4.27 16
13 N -0.82 -23.27 13.96 55.43 0.77 -22.49 16
14 Si 0.80 20.43 26.54 -169.99 -4.51 15.92 16
15 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16
16 H -0.22 -5.78 5.61 56.52 0.32 -5.46 16
17 H -0.25 -5.97 7.11 56.52 0.40 -5.57 16
18 C 0.10 1.66 5.95 -3.53 -0.02 1.64 16
19 C 0.08 1.15 3.93 -26.58 -0.10 1.04 16
20 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16
21 C -0.19 -3.03 8.81 37.16 0.33 -2.70 16
22 O -0.37 -5.71 9.76 -35.23 -0.34 -6.05 16
23 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16
24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16
26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16
28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
29 H 0.10 1.72 7.24 -51.93 -0.38 1.34 16
30 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16
31 H 0.10 1.71 7.24 -51.93 -0.38 1.34 16
32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
35 H 0.08 1.42 4.25 -51.93 -0.22 1.20 16
LS Contribution 286.36 15.07 4.32 4.32
Total: -1.00 -31.54 286.36 -6.78 -38.32
By element:
Atomic # 1 Polarization: 7.39 SS G_CDS: -5.05 Total: 2.34 kcal
Atomic # 6 Polarization: -23.70 SS G_CDS: 0.55 Total: -23.15 kcal
Atomic # 7 Polarization: -43.11 SS G_CDS: 0.45 Total: -42.66 kcal
Atomic # 8 Polarization: -59.31 SS G_CDS: -2.08 Total: -61.39 kcal
Atomic # 14 Polarization: 20.43 SS G_CDS: -4.51 Total: 15.92 kcal
Atomic # 16 Polarization: 66.75 SS G_CDS: -0.45 Total: 66.30 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -31.54 -6.78 -38.32 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689145882.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.931 kcal
(2) G-P(sol) polarization free energy of solvation -31.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.468 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.252 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds