Wall clock time and date at job start Mon Mar 30 2020 04:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46888 * 2 1 4 4 H 1.08993 * 109.51549 * 55.09718 * 3 2 1 5 5 C 1.53719 * 109.48260 * 175.36507 * 3 2 1 6 6 N 1.47147 * 108.16059 * 172.39710 * 5 3 2 7 7 S 1.65601 * 120.98249 * 129.42869 * 6 5 3 8 8 O 1.42102 * 106.40098 * 156.17736 * 7 6 5 9 9 O 1.42098 * 106.40172 * 23.25825 * 7 6 5 10 10 C 1.76193 * 107.21727 * 269.71561 * 7 6 5 11 11 H 1.07999 * 120.00769 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99923 * 179.97438 * 10 7 6 13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 7 14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 7 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.47155 * 118.03752 * 309.15388 * 6 5 3 19 19 C 1.53295 * 108.38221 * 50.78759 * 18 6 5 20 20 H 1.09003 * 109.51247 * 187.72282 * 19 18 6 21 21 C 1.52996 * 109.51490 * 67.62193 * 19 18 6 22 22 O 1.42962 * 109.51081 * 294.99469 * 3 2 1 23 23 H 1.08998 * 109.47395 * 60.00163 * 1 2 3 24 24 H 1.09002 * 109.47439 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47448 * 300.00038 * 1 2 3 26 26 H 1.08998 * 109.47292 * 239.99434 * 2 1 3 27 27 H 1.08999 * 109.47091 * 119.99382 * 2 1 3 28 28 H 1.09001 * 109.83765 * 52.71334 * 5 3 2 29 29 H 1.08994 * 109.74248 * 292.02164 * 5 3 2 30 30 H 0.96998 * 120.00124 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.68703 * 170.51223 * 18 6 5 32 32 H 1.09000 * 109.67955 * 291.06735 * 18 6 5 33 33 H 1.09002 * 109.47118 * 60.00088 * 21 19 18 34 34 H 1.08996 * 109.47404 * 179.97438 * 21 19 18 35 35 H 1.08999 * 109.47521 * 300.00417 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6071 1.9817 0.8425 5 6 3.5726 1.4445 0.1171 6 7 4.0451 2.8254 -0.0697 7 16 5.0874 3.5234 1.0115 8 8 5.7636 4.5561 0.3075 9 8 5.7625 2.4567 1.6639 10 6 4.1078 4.3186 2.2413 11 1 3.0302 4.2802 2.1816 12 6 4.7171 4.9892 3.2806 13 7 3.9859 5.5824 4.1989 14 14 6.5810 5.0552 3.3845 15 1 7.0756 6.2490 2.6526 16 1 7.1545 3.8284 2.7752 17 1 6.9948 5.1408 4.8081 18 6 3.5690 3.5659 -1.2489 19 6 2.0407 3.4587 -1.3024 20 1 1.6786 3.8822 -2.2392 21 6 1.4331 4.2258 -0.1263 22 8 1.6622 2.0825 -1.2213 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 4.0031 0.8020 -0.6511 29 1 3.8670 1.0860 1.1034 30 1 4.4145 6.0544 4.9299 31 1 3.8609 4.6129 -1.1676 32 1 3.9991 3.1334 -2.1522 33 1 1.7258 5.2741 -0.1862 34 1 0.3465 4.1496 -0.1652 35 1 1.7942 3.8008 0.8102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689145882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:57 Heat of formation + Delta-G solvation = -129.251904 kcal Electronic energy + Delta-G solvation = -19681.214138 eV Core-core repulsion = 16613.139489 eV Total energy + Delta-G solvation = -3068.074649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.44876 -35.78129 -34.52755 -34.43675 -33.98822 -33.05924 -30.85252 -28.13375 -26.42616 -25.48830 -23.58601 -21.69184 -19.62562 -18.60666 -17.63978 -16.85404 -16.40093 -15.46738 -15.28275 -15.09087 -14.31843 -14.02324 -13.68918 -13.55801 -13.42479 -13.24526 -12.86520 -12.06152 -11.89048 -11.74964 -11.68737 -11.57843 -11.39819 -11.03745 -10.93922 -10.80355 -10.76248 -10.63547 -10.48849 -10.05553 -9.78687 -9.74562 -9.24448 -9.01233 -8.14218 -6.83846 -5.38065 1.93449 3.04068 3.14396 3.23822 3.91879 3.95242 4.08255 4.54965 4.88545 5.07731 5.19533 5.25436 5.28260 5.41045 5.46934 5.47150 5.66111 5.73561 5.81356 5.89532 5.99423 6.01917 6.03596 6.11974 6.19992 6.20761 6.29731 6.40135 6.61008 6.68171 7.25699 7.44945 7.48248 8.18788 8.67210 10.27940 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.007870 C = 0.007748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.407459 B = 3556.801302 C = 3612.850363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.072 0.928 5 C 0.100 3.900 6 N -1.003 6.003 7 S 2.673 3.327 8 O -1.008 7.008 9 O -1.006 7.006 10 C -1.016 5.016 11 H 0.125 0.875 12 C 0.155 3.845 13 N -0.822 5.822 14 Si 0.799 3.201 15 H -0.246 1.246 16 H -0.221 1.221 17 H -0.254 1.254 18 C 0.098 3.902 19 C 0.077 3.923 20 H 0.106 0.894 21 C -0.191 4.191 22 O -0.373 6.373 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.281 0.719 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 -6.580 -8.089 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.012 3.988 4 H 0.090 0.910 5 C -0.027 4.027 6 N -0.839 5.839 7 S 2.777 3.223 8 O -0.998 6.998 9 O -0.996 6.996 10 C -1.150 5.150 11 H 0.143 0.857 12 C -0.065 4.065 13 N -0.450 5.450 14 Si 0.619 3.381 15 H -0.170 1.170 16 H -0.143 1.143 17 H -0.178 1.178 18 C -0.028 4.028 19 C 0.018 3.982 20 H 0.123 0.877 21 C -0.248 4.248 22 O -0.293 6.293 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.812 -6.621 -8.149 11.550 hybrid contribution 0.277 0.598 0.763 1.008 sum -4.535 -6.023 -7.386 10.555 Atomic orbital electron populations 1.21692 0.95328 1.01126 1.02329 1.21513 0.96651 0.94369 1.02770 1.22636 0.93872 0.93896 0.88355 0.90973 1.22017 0.94286 0.83145 1.03216 1.57799 1.66187 1.21695 1.38183 1.01530 0.73470 0.73566 0.73775 1.93398 1.73649 1.57943 1.74827 1.93453 1.73471 1.57640 1.75036 1.30569 1.09145 1.49614 1.25681 0.85742 1.24407 0.98749 0.90444 0.92882 1.69984 1.37009 1.27426 1.10630 0.87906 0.85113 0.83581 0.81512 1.17019 1.14275 1.17842 1.21950 0.94379 0.97991 0.88496 1.22523 0.93841 0.82311 0.99505 0.87660 1.22503 1.00726 1.01478 1.00074 1.87895 1.79829 1.23422 1.38104 0.92061 0.93048 0.92842 0.91187 0.90360 0.91482 0.88407 0.90893 0.88311 0.91502 0.91065 0.92373 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.81 37.16 0.36 -1.26 16 2 C -0.12 -1.39 5.65 -26.73 -0.15 -1.54 16 3 C 0.07 1.08 2.40 -26.36 -0.06 1.02 16 4 H 0.07 1.17 6.25 -51.93 -0.32 0.85 16 5 C 0.10 1.70 5.89 -3.32 -0.02 1.68 16 6 N -1.00 -19.84 2.85 -112.82 -0.32 -20.16 16 7 S 2.67 66.75 4.20 -107.50 -0.45 66.30 16 8 O -1.01 -26.76 15.64 -57.17 -0.89 -27.66 16 9 O -1.01 -26.84 14.81 -57.17 -0.85 -27.68 16 10 C -1.02 -27.61 10.29 30.60 0.31 -27.30 16 11 H 0.12 3.36 6.20 -52.49 -0.33 3.04 16 12 C 0.15 4.37 5.47 -17.82 -0.10 4.27 16 13 N -0.82 -23.27 13.96 55.43 0.77 -22.49 16 14 Si 0.80 20.43 26.54 -169.99 -4.51 15.92 16 15 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.22 -5.78 5.61 56.52 0.32 -5.46 16 17 H -0.25 -5.97 7.11 56.52 0.40 -5.57 16 18 C 0.10 1.66 5.95 -3.53 -0.02 1.64 16 19 C 0.08 1.15 3.93 -26.58 -0.10 1.04 16 20 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 21 C -0.19 -3.03 8.81 37.16 0.33 -2.70 16 22 O -0.37 -5.71 9.76 -35.23 -0.34 -6.05 16 23 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.10 1.72 7.24 -51.93 -0.38 1.34 16 30 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.10 1.71 7.24 -51.93 -0.38 1.34 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.42 4.25 -51.93 -0.22 1.20 16 LS Contribution 286.36 15.07 4.32 4.32 Total: -1.00 -31.54 286.36 -6.78 -38.32 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.05 Total: 2.34 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 0.55 Total: -23.15 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.45 Total: -42.66 kcal Atomic # 8 Polarization: -59.31 SS G_CDS: -2.08 Total: -61.39 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.51 Total: 15.92 kcal Atomic # 16 Polarization: 66.75 SS G_CDS: -0.45 Total: 66.30 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.54 -6.78 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689145882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.931 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds