Wall clock time and date at job start Mon Mar 30 2020 04:30:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.46952 * 2 1
4 4 H 1.09005 * 109.51495 * 304.90068 * 3 2 1
5 5 C 1.53289 * 109.51363 * 184.74628 * 3 2 1
6 6 N 1.47153 * 108.38653 * 187.77205 * 5 3 2
7 7 S 1.65595 * 120.98404 * 230.51288 * 6 5 3
8 8 O 1.42106 * 106.40055 * 203.53838 * 7 6 5
9 9 O 1.42096 * 106.40412 * 336.45938 * 7 6 5
10 10 C 1.76204 * 107.21690 * 90.00272 * 7 6 5
11 11 H 1.07991 * 119.99991 * 359.97438 * 10 7 6
12 12 C 1.37881 * 119.99705 * 179.97438 * 10 7 6
13 13 N 1.31517 * 119.99999 * 0.02562 * 12 10 7
14 14 Si 1.86803 * 119.99707 * 179.97438 * 12 10 7
15 15 H 1.48500 * 109.46764 * 60.00451 * 14 12 10
16 16 H 1.48500 * 109.46868 * 180.02562 * 14 12 10
17 17 H 1.48498 * 109.47160 * 300.00593 * 14 12 10
18 18 C 1.47274 * 118.05448 * 50.53763 * 6 5 3
19 19 C 1.53296 * 108.32289 * 309.48608 * 18 6 5
20 20 H 1.09007 * 109.50673 * 172.23749 * 19 18 6
21 21 C 1.52997 * 109.51545 * 292.33619 * 19 18 6
22 22 O 1.42960 * 109.51254 * 64.99860 * 3 2 1
23 23 H 1.09007 * 109.47124 * 179.97438 * 1 2 3
24 24 H 1.08996 * 109.47653 * 299.99806 * 1 2 3
25 25 H 1.08996 * 109.47570 * 60.00321 * 1 2 3
26 26 H 1.09002 * 109.46980 * 240.00180 * 2 1 3
27 27 H 1.08996 * 109.47050 * 120.00471 * 2 1 3
28 28 H 1.08998 * 109.68622 * 307.50121 * 5 3 2
29 29 H 1.09000 * 109.67986 * 68.01557 * 5 3 2
30 30 H 0.97002 * 119.99591 * 179.97438 * 13 12 10
31 31 H 1.09005 * 109.74149 * 189.76195 * 18 6 5
32 32 H 1.08993 * 109.67566 * 69.17508 * 18 6 5
33 33 H 1.09002 * 109.47153 * 179.90016 * 21 19 18
34 34 H 1.09001 * 109.46832 * 59.90207 * 21 19 18
35 35 H 1.09004 * 109.47261 * 299.90188 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6071 1.9817 -0.8426
5 6 3.5682 1.4453 -0.1196
6 7 4.0461 2.8240 0.0707
7 16 5.0893 3.5214 -1.0099
8 8 5.7655 4.5539 -0.3055
9 8 5.7642 2.4544 -1.6619
10 6 4.1107 4.3170 -2.2404
11 1 3.0331 4.2790 -2.1812
12 6 4.7209 4.9881 -3.2788
13 7 6.0333 5.0339 -3.3512
14 14 3.6835 5.8310 -4.5838
15 1 2.8263 6.8617 -3.9450
16 1 4.5730 6.4760 -5.5828
17 1 2.8266 4.8249 -5.2610
18 6 3.5699 3.5656 1.2507
19 6 2.0415 3.4584 1.3027
20 1 1.6787 3.8814 2.2395
21 6 1.4350 4.2263 0.1265
22 8 1.6622 2.0825 1.2212
23 1 -0.3634 -1.0277 -0.0005
24 1 -0.3634 0.5138 0.8899
25 1 -0.3634 0.5137 -0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5139 0.8899
28 1 3.9975 0.7990 0.6459
29 1 3.8598 1.0882 -1.1072
30 1 6.4625 5.5058 -4.0820
31 1 3.8620 4.6126 1.1701
32 1 3.9993 3.1326 2.1540
33 1 0.3484 4.1482 0.1632
34 1 1.7983 3.8029 -0.8098
35 1 1.7262 5.2749 0.1883
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000689145886.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:30:00
Heat of formation + Delta-G solvation = -169.707190 kcal
Electronic energy + Delta-G solvation = -19637.451740 eV
Core-core repulsion = 16567.622818 eV
Total energy + Delta-G solvation = -3069.828922 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.69202 -37.53275 -36.19874 -35.77683 -35.24684 -35.05505 -31.99814 -29.36590
-28.28764 -26.74027 -24.78087 -22.76154 -21.09320 -20.36798 -19.30356 -18.39652
-17.63199 -17.15145 -16.73308 -16.45337 -15.90890 -15.52892 -15.29955 -15.13294
-14.52999 -14.41908 -14.01860 -13.49732 -13.18807 -13.03986 -13.01995 -12.92459
-12.74216 -12.70412 -12.56263 -12.34932 -12.31483 -12.04570 -11.94325 -11.75332
-11.33620 -11.25222 -10.99766 -10.76578 -9.59466 -8.75811 -7.49988 0.23008
1.32229 1.34078 1.47015 2.17949 2.56479 2.71207 2.82594 3.70322
3.75265 3.86771 4.01611 4.10714 4.16857 4.31187 4.36489 4.45494
4.45982 4.53662 4.68757 4.77848 4.86636 4.92733 4.95760 5.03618
5.16252 5.17551 5.28956 5.35702 5.42032 5.52609 5.83901 5.92055
6.28837 6.76813 8.19315
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.022385 B = 0.008264 C = 0.007571
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1250.554155 B = 3387.519073 C = 3697.498492
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.114 4.114
3 C 0.076 3.924
4 H 0.062 0.938
5 C 0.091 3.909
6 N -1.010 6.010
7 S 2.714 3.286
8 O -1.040 7.040
9 O -1.042 7.042
10 C -1.033 5.033
11 H 0.123 0.877
12 C 0.072 3.928
13 N -0.896 5.896
14 Si 0.986 3.014
15 H -0.248 1.248
16 H -0.265 1.265
17 H -0.250 1.250
18 C 0.088 3.912
19 C 0.082 3.918
20 H 0.141 0.859
21 C -0.192 4.192
22 O -0.371 6.371
23 H 0.069 0.931
24 H 0.055 0.945
25 H 0.050 0.950
26 H 0.087 0.913
27 H 0.078 0.922
28 H 0.080 0.920
29 H 0.083 0.917
30 H 0.299 0.701
31 H 0.086 0.914
32 H 0.082 0.918
33 H 0.079 0.921
34 H 0.050 0.950
35 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.890 -5.209 6.046 15.160
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.151 4.151
3 C 0.017 3.983
4 H 0.080 0.920
5 C -0.035 4.035
6 N -0.848 5.848
7 S 2.817 3.183
8 O -1.030 7.030
9 O -1.032 7.032
10 C -1.166 5.166
11 H 0.141 0.859
12 C -0.140 4.140
13 N -0.528 5.528
14 Si 0.804 3.196
15 H -0.172 1.172
16 H -0.189 1.189
17 H -0.173 1.173
18 C -0.038 4.038
19 C 0.023 3.977
20 H 0.158 0.842
21 C -0.249 4.249
22 O -0.290 6.290
23 H 0.088 0.912
24 H 0.074 0.926
25 H 0.069 0.931
26 H 0.106 0.894
27 H 0.096 0.904
28 H 0.098 0.902
29 H 0.101 0.899
30 H 0.109 0.891
31 H 0.104 0.896
32 H 0.100 0.900
33 H 0.098 0.902
34 H 0.069 0.931
35 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -11.826 -5.314 6.214 14.377
hybrid contribution -0.041 0.852 -1.154 1.435
sum -11.867 -4.463 5.060 13.651
Atomic orbital electron populations
1.21657 0.94164 1.02278 1.01906 1.21559 0.97556 0.92311 1.03718
1.22568 0.91986 0.95663 0.88078 0.91973 1.22163 0.96158 0.82201
1.02957 1.57817 1.65793 1.22863 1.38375 1.00170 0.73238 0.72046
0.72853 1.93292 1.74653 1.59411 1.75690 1.93289 1.74736 1.58767
1.76388 1.30925 1.08296 1.50133 1.27281 0.85869 1.25995 0.96042
0.92529 0.99478 1.69996 1.11165 1.38164 1.33439 0.85218 0.78650
0.79092 0.76622 1.17192 1.18949 1.17322 1.22241 0.96327 0.97217
0.87991 1.22624 0.91887 0.82321 1.00854 0.84181 1.22516 1.02027
1.01262 0.99107 1.87912 1.79392 1.23576 1.38080 0.91181 0.92570
0.93077 0.89430 0.90377 0.90204 0.89884 0.89124 0.89590 0.90013
0.90213 0.93065 0.91122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.71 9.81 71.98 0.71 -2.00 16
2 C -0.11 -2.49 5.65 30.59 0.17 -2.31 16
3 C 0.08 2.19 2.39 30.69 0.07 2.26 16
4 H 0.06 1.89 6.25 -2.38 -0.01 1.87 16
5 C 0.09 3.16 5.86 86.35 0.51 3.67 16
6 N -1.01 -41.49 2.86 -511.34 -1.46 -42.95 16
7 S 2.71 147.76 4.98 -56.49 -0.28 147.48 16
8 O -1.04 -62.60 16.82 -128.00 -2.15 -64.75 16
9 O -1.04 -62.90 16.82 -128.00 -2.15 -65.06 16
10 C -1.03 -55.91 9.75 67.74 0.66 -55.25 16
11 H 0.12 5.95 5.95 -2.92 -0.02 5.94 16
12 C 0.07 3.99 5.46 84.66 0.46 4.45 16
13 N -0.90 -53.50 13.19 21.45 0.28 -53.22 16
14 Si 0.99 40.68 29.54 68.60 2.03 42.71 16
15 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16
16 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16
17 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16
18 C 0.09 2.98 5.96 86.33 0.51 3.50 16
19 C 0.08 2.25 3.92 30.69 0.12 2.37 16
20 H 0.14 2.88 8.14 -2.38 -0.02 2.87 16
21 C -0.19 -5.47 8.81 71.98 0.63 -4.83 16
22 O -0.37 -10.41 9.76 -148.98 -1.45 -11.86 16
23 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16
24 H 0.06 1.13 7.82 -2.39 -0.02 1.11 16
25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16
28 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16
29 H 0.08 3.09 7.25 -2.39 -0.02 3.07 16
30 H 0.30 16.06 8.31 -92.71 -0.77 15.29 16
31 H 0.09 3.11 7.25 -2.38 -0.02 3.10 16
32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16
33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16
34 H 0.05 1.71 4.25 -2.39 -0.01 1.70 16
35 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16
Total: -1.00 -73.95 293.25 -0.27 -74.21
By element:
Atomic # 1 Polarization: 20.52 SS G_CDS: 1.08 Total: 21.60 kcal
Atomic # 6 Polarization: -52.01 SS G_CDS: 3.85 Total: -48.16 kcal
Atomic # 7 Polarization: -94.99 SS G_CDS: -1.18 Total: -96.17 kcal
Atomic # 8 Polarization: -135.91 SS G_CDS: -5.76 Total: -141.67 kcal
Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal
Atomic # 16 Polarization: 147.76 SS G_CDS: -0.28 Total: 147.48 kcal
Total: -73.95 -0.27 -74.21 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689145886.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -95.493 kcal
(2) G-P(sol) polarization free energy of solvation -73.948 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.441 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.214 kcal
(6) G-S(sol) free energy of system = (1) + (5) -169.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds