Wall clock time and date at job start Mon Mar 30 2020 04:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46952 * 2 1 4 4 H 1.09005 * 109.51495 * 304.90068 * 3 2 1 5 5 C 1.53289 * 109.51363 * 184.74628 * 3 2 1 6 6 N 1.47153 * 108.38653 * 187.77205 * 5 3 2 7 7 S 1.65595 * 120.98404 * 230.51288 * 6 5 3 8 8 O 1.42106 * 106.40055 * 203.53838 * 7 6 5 9 9 O 1.42096 * 106.40412 * 336.45938 * 7 6 5 10 10 C 1.76204 * 107.21690 * 90.00272 * 7 6 5 11 11 H 1.07991 * 119.99991 * 359.97438 * 10 7 6 12 12 C 1.37881 * 119.99705 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99999 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99707 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46764 * 60.00451 * 14 12 10 16 16 H 1.48500 * 109.46868 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47160 * 300.00593 * 14 12 10 18 18 C 1.47274 * 118.05448 * 50.53763 * 6 5 3 19 19 C 1.53296 * 108.32289 * 309.48608 * 18 6 5 20 20 H 1.09007 * 109.50673 * 172.23749 * 19 18 6 21 21 C 1.52997 * 109.51545 * 292.33619 * 19 18 6 22 22 O 1.42960 * 109.51254 * 64.99860 * 3 2 1 23 23 H 1.09007 * 109.47124 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47653 * 299.99806 * 1 2 3 25 25 H 1.08996 * 109.47570 * 60.00321 * 1 2 3 26 26 H 1.09002 * 109.46980 * 240.00180 * 2 1 3 27 27 H 1.08996 * 109.47050 * 120.00471 * 2 1 3 28 28 H 1.08998 * 109.68622 * 307.50121 * 5 3 2 29 29 H 1.09000 * 109.67986 * 68.01557 * 5 3 2 30 30 H 0.97002 * 119.99591 * 179.97438 * 13 12 10 31 31 H 1.09005 * 109.74149 * 189.76195 * 18 6 5 32 32 H 1.08993 * 109.67566 * 69.17508 * 18 6 5 33 33 H 1.09002 * 109.47153 * 179.90016 * 21 19 18 34 34 H 1.09001 * 109.46832 * 59.90207 * 21 19 18 35 35 H 1.09004 * 109.47261 * 299.90188 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6071 1.9817 -0.8426 5 6 3.5682 1.4453 -0.1196 6 7 4.0461 2.8240 0.0707 7 16 5.0893 3.5214 -1.0099 8 8 5.7655 4.5539 -0.3055 9 8 5.7642 2.4544 -1.6619 10 6 4.1107 4.3170 -2.2404 11 1 3.0331 4.2790 -2.1812 12 6 4.7209 4.9881 -3.2788 13 7 6.0333 5.0339 -3.3512 14 14 3.6835 5.8310 -4.5838 15 1 2.8263 6.8617 -3.9450 16 1 4.5730 6.4760 -5.5828 17 1 2.8266 4.8249 -5.2610 18 6 3.5699 3.5656 1.2507 19 6 2.0415 3.4584 1.3027 20 1 1.6787 3.8814 2.2395 21 6 1.4350 4.2263 0.1265 22 8 1.6622 2.0825 1.2212 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.9975 0.7990 0.6459 29 1 3.8598 1.0882 -1.1072 30 1 6.4625 5.5058 -4.0820 31 1 3.8620 4.6126 1.1701 32 1 3.9993 3.1326 2.1540 33 1 0.3484 4.1482 0.1632 34 1 1.7983 3.8029 -0.8098 35 1 1.7262 5.2749 0.1883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689145886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:00 Heat of formation + Delta-G solvation = -169.707190 kcal Electronic energy + Delta-G solvation = -19637.451740 eV Core-core repulsion = 16567.622818 eV Total energy + Delta-G solvation = -3069.828922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69202 -37.53275 -36.19874 -35.77683 -35.24684 -35.05505 -31.99814 -29.36590 -28.28764 -26.74027 -24.78087 -22.76154 -21.09320 -20.36798 -19.30356 -18.39652 -17.63199 -17.15145 -16.73308 -16.45337 -15.90890 -15.52892 -15.29955 -15.13294 -14.52999 -14.41908 -14.01860 -13.49732 -13.18807 -13.03986 -13.01995 -12.92459 -12.74216 -12.70412 -12.56263 -12.34932 -12.31483 -12.04570 -11.94325 -11.75332 -11.33620 -11.25222 -10.99766 -10.76578 -9.59466 -8.75811 -7.49988 0.23008 1.32229 1.34078 1.47015 2.17949 2.56479 2.71207 2.82594 3.70322 3.75265 3.86771 4.01611 4.10714 4.16857 4.31187 4.36489 4.45494 4.45982 4.53662 4.68757 4.77848 4.86636 4.92733 4.95760 5.03618 5.16252 5.17551 5.28956 5.35702 5.42032 5.52609 5.83901 5.92055 6.28837 6.76813 8.19315 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.008264 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.554155 B = 3387.519073 C = 3697.498492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.062 0.938 5 C 0.091 3.909 6 N -1.010 6.010 7 S 2.714 3.286 8 O -1.040 7.040 9 O -1.042 7.042 10 C -1.033 5.033 11 H 0.123 0.877 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.986 3.014 15 H -0.248 1.248 16 H -0.265 1.265 17 H -0.250 1.250 18 C 0.088 3.912 19 C 0.082 3.918 20 H 0.141 0.859 21 C -0.192 4.192 22 O -0.371 6.371 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.299 0.701 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 -5.209 6.046 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C 0.017 3.983 4 H 0.080 0.920 5 C -0.035 4.035 6 N -0.848 5.848 7 S 2.817 3.183 8 O -1.030 7.030 9 O -1.032 7.032 10 C -1.166 5.166 11 H 0.141 0.859 12 C -0.140 4.140 13 N -0.528 5.528 14 Si 0.804 3.196 15 H -0.172 1.172 16 H -0.189 1.189 17 H -0.173 1.173 18 C -0.038 4.038 19 C 0.023 3.977 20 H 0.158 0.842 21 C -0.249 4.249 22 O -0.290 6.290 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.826 -5.314 6.214 14.377 hybrid contribution -0.041 0.852 -1.154 1.435 sum -11.867 -4.463 5.060 13.651 Atomic orbital electron populations 1.21657 0.94164 1.02278 1.01906 1.21559 0.97556 0.92311 1.03718 1.22568 0.91986 0.95663 0.88078 0.91973 1.22163 0.96158 0.82201 1.02957 1.57817 1.65793 1.22863 1.38375 1.00170 0.73238 0.72046 0.72853 1.93292 1.74653 1.59411 1.75690 1.93289 1.74736 1.58767 1.76388 1.30925 1.08296 1.50133 1.27281 0.85869 1.25995 0.96042 0.92529 0.99478 1.69996 1.11165 1.38164 1.33439 0.85218 0.78650 0.79092 0.76622 1.17192 1.18949 1.17322 1.22241 0.96327 0.97217 0.87991 1.22624 0.91887 0.82321 1.00854 0.84181 1.22516 1.02027 1.01262 0.99107 1.87912 1.79392 1.23576 1.38080 0.91181 0.92570 0.93077 0.89430 0.90377 0.90204 0.89884 0.89124 0.89590 0.90013 0.90213 0.93065 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.81 71.98 0.71 -2.00 16 2 C -0.11 -2.49 5.65 30.59 0.17 -2.31 16 3 C 0.08 2.19 2.39 30.69 0.07 2.26 16 4 H 0.06 1.89 6.25 -2.38 -0.01 1.87 16 5 C 0.09 3.16 5.86 86.35 0.51 3.67 16 6 N -1.01 -41.49 2.86 -511.34 -1.46 -42.95 16 7 S 2.71 147.76 4.98 -56.49 -0.28 147.48 16 8 O -1.04 -62.60 16.82 -128.00 -2.15 -64.75 16 9 O -1.04 -62.90 16.82 -128.00 -2.15 -65.06 16 10 C -1.03 -55.91 9.75 67.74 0.66 -55.25 16 11 H 0.12 5.95 5.95 -2.92 -0.02 5.94 16 12 C 0.07 3.99 5.46 84.66 0.46 4.45 16 13 N -0.90 -53.50 13.19 21.45 0.28 -53.22 16 14 Si 0.99 40.68 29.54 68.60 2.03 42.71 16 15 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 16 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 18 C 0.09 2.98 5.96 86.33 0.51 3.50 16 19 C 0.08 2.25 3.92 30.69 0.12 2.37 16 20 H 0.14 2.88 8.14 -2.38 -0.02 2.87 16 21 C -0.19 -5.47 8.81 71.98 0.63 -4.83 16 22 O -0.37 -10.41 9.76 -148.98 -1.45 -11.86 16 23 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.06 1.13 7.82 -2.39 -0.02 1.11 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.08 3.09 7.25 -2.39 -0.02 3.07 16 30 H 0.30 16.06 8.31 -92.71 -0.77 15.29 16 31 H 0.09 3.11 7.25 -2.38 -0.02 3.10 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.71 4.25 -2.39 -0.01 1.70 16 35 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -73.95 293.25 -0.27 -74.21 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 1.08 Total: 21.60 kcal Atomic # 6 Polarization: -52.01 SS G_CDS: 3.85 Total: -48.16 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -1.18 Total: -96.17 kcal Atomic # 8 Polarization: -135.91 SS G_CDS: -5.76 Total: -141.67 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 147.76 SS G_CDS: -0.28 Total: 147.48 kcal Total: -73.95 -0.27 -74.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689145886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.493 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds