Wall clock time and date at job start Mon Mar 30 2020 05:12:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46508 * 119.99973 * 2 1
4 4 C 1.52995 * 109.47067 * 274.52899 * 3 2 1
5 5 H 1.09004 * 110.43427 * 307.70318 * 4 3 2
6 6 C 1.54883 * 110.48861 * 70.39321 * 4 3 2
7 7 C 1.54893 * 102.75080 * 156.62142 * 6 4 3
8 8 C 1.54273 * 104.19395 * 322.05477 * 7 6 4
9 9 C 1.53878 * 106.59692 * 23.61429 * 8 7 6
10 10 H 1.09005 * 110.03101 * 240.71468 * 9 8 7
11 11 O 1.42888 * 110.07653 * 119.30557 * 9 8 7
12 12 S 1.65600 * 120.00425 * 179.97438 * 2 1 3
13 13 O 1.42103 * 106.39783 * 28.46249 * 12 2 1
14 14 O 1.42094 * 106.40731 * 161.38245 * 12 2 1
15 15 C 1.76201 * 107.21540 * 274.92497 * 12 2 1
16 16 H 1.07995 * 120.00279 * 355.27889 * 15 12 2
17 17 C 1.37883 * 119.99752 * 175.27921 * 15 12 2
18 18 N 1.31516 * 119.99779 * 0.02562 * 17 15 12
19 19 Si 1.86796 * 119.99860 * 179.97438 * 17 15 12
20 20 H 1.48498 * 109.47010 * 90.00098 * 19 17 15
21 21 H 1.48499 * 109.47128 * 210.00116 * 19 17 15
22 22 H 1.48495 * 109.47350 * 330.00056 * 19 17 15
23 23 H 1.08999 * 109.46868 * 89.99953 * 1 2 3
24 24 H 1.08991 * 109.47386 * 210.00176 * 1 2 3
25 25 H 1.08998 * 109.47025 * 329.99920 * 1 2 3
26 26 H 1.09007 * 109.47087 * 154.52439 * 3 2 1
27 27 H 1.09000 * 109.46947 * 34.53032 * 3 2 1
28 28 H 1.09000 * 110.75534 * 274.93417 * 6 4 3
29 29 H 1.09001 * 110.76019 * 38.30694 * 6 4 3
30 30 H 1.08996 * 110.48730 * 203.38068 * 7 6 4
31 31 H 1.08999 * 110.60205 * 80.78651 * 7 6 4
32 32 H 1.08996 * 110.03543 * 264.32660 * 8 7 6
33 33 H 1.09001 * 110.07078 * 142.91638 * 8 7 6
34 34 H 0.96704 * 114.00558 * 62.80594 * 11 9 8
35 35 H 0.97003 * 119.99902 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.3538 1.7674 -1.4380
5 1 2.7817 0.9868 -2.0670
6 6 0.9887 2.2342 -2.0013
7 6 1.4008 3.2174 -3.1250
8 6 2.6267 3.9567 -2.5500
9 6 3.2328 3.0347 -1.4774
10 1 3.2169 3.5304 -0.5068
11 8 4.5741 2.6894 -1.8285
12 16 2.2931 -1.4341 0.0006
13 8 1.4558 -2.3811 -0.6486
14 8 3.6124 -1.1359 -0.4347
15 6 2.4287 -1.9572 1.6777
16 1 2.0710 -1.3199 2.4728
17 6 2.9916 -3.1803 1.9750
18 7 3.4277 -3.9561 1.0067
19 14 3.1361 -3.7346 3.7529
20 1 1.9129 -4.4827 4.1391
21 1 4.3226 -4.6150 3.9021
22 1 3.2877 -2.5467 4.6310
23 1 -0.3633 0.0000 -1.0277
24 1 -0.3634 -0.8899 0.5138
25 1 -0.3633 0.8900 0.5138
26 1 3.1827 1.1196 0.4421
27 1 1.6460 2.0067 0.5825
28 1 0.4313 1.3917 -2.4106
29 1 0.4086 2.7462 -1.2336
30 1 0.5938 3.9204 -3.3317
31 1 1.6729 2.6737 -4.0297
32 1 2.3168 4.8998 -2.1000
33 1 3.3560 4.1415 -3.3388
34 1 5.1767 3.4446 -1.8701
35 1 3.8241 -4.8164 1.2158
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000689233358.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:12:58
Heat of formation + Delta-G solvation = -152.988832 kcal
Electronic energy + Delta-G solvation = -19080.256742 eV
Core-core repulsion = 16011.152782 eV
Total energy + Delta-G solvation = -3069.103959 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-38.95940 -35.73388 -35.16761 -34.36871 -33.84930 -33.00278 -29.83323 -27.62222
-26.07734 -25.93991 -22.98156 -20.74438 -19.79878 -18.68382 -17.25926 -16.87165
-16.13051 -15.55398 -15.34432 -14.93404 -14.71958 -13.99172 -13.35037 -13.21949
-13.03210 -12.90184 -12.30401 -12.27907 -11.94719 -11.87239 -11.27748 -11.19466
-11.15162 -11.03672 -10.65625 -10.57436 -10.49912 -10.32783 -10.17976 -10.00415
-9.96547 -9.77592 -9.20390 -8.84734 -8.12971 -6.64357 -5.26628 2.34999
3.09238 3.15797 3.22616 4.09219 4.33341 4.56171 4.67859 4.69028
4.77288 5.00847 5.36334 5.43296 5.52725 5.64261 5.66739 5.70327
5.79082 5.89046 5.91435 5.97791 6.09883 6.15976 6.24198 6.26608
6.29633 6.37216 6.47596 6.74036 6.84970 7.37120 7.67203 7.86999
8.02289 8.93766 10.28929
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.033743 B = 0.006171 C = 0.005845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.602311 B = 4536.474158 C = 4789.541349
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.103 3.897
2 N -1.015 6.015
3 C 0.139 3.861
4 C -0.106 4.106
5 H 0.093 0.907
6 C -0.117 4.117
7 C -0.123 4.123
8 C -0.156 4.156
9 C 0.104 3.896
10 H 0.058 0.942
11 O -0.556 6.556
12 S 2.713 3.287
13 O -1.003 7.003
14 O -1.000 7.000
15 C -1.022 5.022
16 H 0.101 0.899
17 C 0.132 3.868
18 N -0.845 5.845
19 Si 0.920 3.080
20 H -0.267 1.267
21 H -0.275 1.275
22 H -0.263 1.263
23 H 0.044 0.956
24 H 0.069 0.931
25 H 0.056 0.944
26 H 0.085 0.915
27 H 0.065 0.935
28 H 0.073 0.927
29 H 0.068 0.932
30 H 0.062 0.938
31 H 0.066 0.934
32 H 0.065 0.935
33 H 0.070 0.930
34 H 0.370 0.630
35 H 0.290 0.710
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.931 14.671 -2.428 15.381
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 N -0.849 5.849
3 C 0.012 3.988
4 C -0.126 4.126
5 H 0.111 0.889
6 C -0.154 4.154
7 C -0.160 4.160
8 C -0.194 4.194
9 C 0.045 3.955
10 H 0.076 0.924
11 O -0.360 6.360
12 S 2.813 3.187
13 O -0.993 6.993
14 O -0.990 6.990
15 C -1.155 5.155
16 H 0.119 0.881
17 C -0.086 4.086
18 N -0.475 5.475
19 Si 0.744 3.256
20 H -0.192 1.192
21 H -0.200 1.200
22 H -0.187 1.187
23 H 0.062 0.938
24 H 0.088 0.912
25 H 0.075 0.925
26 H 0.104 0.896
27 H 0.083 0.917
28 H 0.092 0.908
29 H 0.087 0.913
30 H 0.081 0.919
31 H 0.085 0.915
32 H 0.083 0.917
33 H 0.089 0.911
34 H 0.216 0.784
35 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -3.816 13.489 -3.300 14.401
hybrid contribution 0.170 0.383 1.556 1.611
sum -3.646 13.872 -1.744 14.448
Atomic orbital electron populations
1.21277 0.80302 1.02020 1.00697 1.57934 1.14096 1.21886 1.90995
1.21111 0.97198 0.85908 0.94546 1.22506 0.94155 0.96981 0.98983
0.88893 1.22575 0.96622 0.98710 0.97513 1.22308 0.96925 0.98111
0.98694 1.22905 0.98704 0.98673 0.99131 1.22466 0.82383 0.94893
0.95779 0.92381 1.86718 1.19544 1.37094 1.92650 1.00634 0.71934
0.69663 0.76457 1.93350 1.69239 1.59341 1.77362 1.93383 1.38018
1.83781 1.83807 1.30660 1.54053 1.12784 1.18019 0.88096 1.24761
0.89686 0.94023 1.00108 1.69911 1.32758 1.11154 1.33664 0.86179
0.78511 0.79042 0.81901 1.19225 1.19965 1.18708 0.93763 0.91232
0.92542 0.89627 0.91653 0.90844 0.91310 0.91884 0.91526 0.91660
0.91145 0.78428 0.89945
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.75 9.42 59.85 0.56 2.31 16
2 N -1.01 -20.91 3.16 -121.76 -0.38 -21.30 16
3 C 0.14 2.46 4.76 -4.04 -0.02 2.44 16
4 C -0.11 -1.73 2.82 -88.96 -0.25 -1.99 16
5 H 0.09 1.87 8.08 -51.93 -0.42 1.45 16
6 C -0.12 -1.52 5.33 -24.74 -0.13 -1.65 16
7 C -0.12 -1.37 6.83 -25.07 -0.17 -1.54 16
8 C -0.16 -1.67 6.61 -25.61 -0.17 -1.84 16
9 C 0.10 1.41 3.83 -25.61 -0.10 1.31 16
10 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16
11 O -0.56 -8.34 13.22 -35.23 -0.47 -8.81 16
12 S 2.71 74.16 4.90 -107.50 -0.53 73.63 16
13 O -1.00 -30.04 17.17 -57.17 -0.98 -31.03 16
14 O -1.00 -29.96 16.83 -57.17 -0.96 -30.92 16
15 C -1.02 -28.81 9.75 30.60 0.30 -28.51 16
16 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16
17 C 0.13 3.77 5.46 -17.82 -0.10 3.67 16
18 N -0.85 -25.44 13.11 55.43 0.73 -24.71 16
19 Si 0.92 20.93 29.54 -169.99 -5.02 15.91 16
20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16
22 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16
23 H 0.04 0.69 7.10 -51.93 -0.37 0.32 16
24 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16
25 H 0.06 0.75 7.94 -51.93 -0.41 0.33 16
26 H 0.09 1.67 7.49 -51.93 -0.39 1.28 16
27 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16
28 H 0.07 1.01 7.15 -51.93 -0.37 0.63 16
29 H 0.07 0.78 7.96 -51.93 -0.41 0.37 16
30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16
34 H 0.37 3.53 9.11 45.56 0.42 3.95 16
35 H 0.29 7.83 8.31 -40.82 -0.34 7.49 16
LS Contribution 300.98 15.07 4.54 4.54
Total: -1.00 -36.70 300.98 -7.57 -44.27
By element:
Atomic # 1 Polarization: 8.63 SS G_CDS: -4.41 Total: 4.22 kcal
Atomic # 6 Polarization: -25.73 SS G_CDS: -0.08 Total: -25.80 kcal
Atomic # 7 Polarization: -46.35 SS G_CDS: 0.34 Total: -46.01 kcal
Atomic # 8 Polarization: -68.34 SS G_CDS: -2.41 Total: -70.75 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal
Atomic # 16 Polarization: 74.16 SS G_CDS: -0.53 Total: 73.63 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -36.70 -7.57 -44.27 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689233358.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.721 kcal
(2) G-P(sol) polarization free energy of solvation -36.702 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.423 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.989 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds