Wall clock time and date at job start Mon Mar 30 2020 05:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 119.99973 * 2 1 4 4 C 1.52995 * 109.47067 * 274.52899 * 3 2 1 5 5 H 1.09004 * 110.43427 * 307.70318 * 4 3 2 6 6 C 1.54883 * 110.48861 * 70.39321 * 4 3 2 7 7 C 1.54893 * 102.75080 * 156.62142 * 6 4 3 8 8 C 1.54273 * 104.19395 * 322.05477 * 7 6 4 9 9 C 1.53878 * 106.59692 * 23.61429 * 8 7 6 10 10 H 1.09005 * 110.03101 * 240.71468 * 9 8 7 11 11 O 1.42888 * 110.07653 * 119.30557 * 9 8 7 12 12 S 1.65600 * 120.00425 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.39783 * 28.46249 * 12 2 1 14 14 O 1.42094 * 106.40731 * 161.38245 * 12 2 1 15 15 C 1.76201 * 107.21540 * 274.92497 * 12 2 1 16 16 H 1.07995 * 120.00279 * 355.27889 * 15 12 2 17 17 C 1.37883 * 119.99752 * 175.27921 * 15 12 2 18 18 N 1.31516 * 119.99779 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 119.99860 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47010 * 90.00098 * 19 17 15 21 21 H 1.48499 * 109.47128 * 210.00116 * 19 17 15 22 22 H 1.48495 * 109.47350 * 330.00056 * 19 17 15 23 23 H 1.08999 * 109.46868 * 89.99953 * 1 2 3 24 24 H 1.08991 * 109.47386 * 210.00176 * 1 2 3 25 25 H 1.08998 * 109.47025 * 329.99920 * 1 2 3 26 26 H 1.09007 * 109.47087 * 154.52439 * 3 2 1 27 27 H 1.09000 * 109.46947 * 34.53032 * 3 2 1 28 28 H 1.09000 * 110.75534 * 274.93417 * 6 4 3 29 29 H 1.09001 * 110.76019 * 38.30694 * 6 4 3 30 30 H 1.08996 * 110.48730 * 203.38068 * 7 6 4 31 31 H 1.08999 * 110.60205 * 80.78651 * 7 6 4 32 32 H 1.08996 * 110.03543 * 264.32660 * 8 7 6 33 33 H 1.09001 * 110.07078 * 142.91638 * 8 7 6 34 34 H 0.96704 * 114.00558 * 62.80594 * 11 9 8 35 35 H 0.97003 * 119.99902 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3538 1.7674 -1.4380 5 1 2.7817 0.9868 -2.0670 6 6 0.9887 2.2342 -2.0013 7 6 1.4008 3.2174 -3.1250 8 6 2.6267 3.9567 -2.5500 9 6 3.2328 3.0347 -1.4774 10 1 3.2169 3.5304 -0.5068 11 8 4.5741 2.6894 -1.8285 12 16 2.2931 -1.4341 0.0006 13 8 1.4558 -2.3811 -0.6486 14 8 3.6124 -1.1359 -0.4347 15 6 2.4287 -1.9572 1.6777 16 1 2.0710 -1.3199 2.4728 17 6 2.9916 -3.1803 1.9750 18 7 3.4277 -3.9561 1.0067 19 14 3.1361 -3.7346 3.7529 20 1 1.9129 -4.4827 4.1391 21 1 4.3226 -4.6150 3.9021 22 1 3.2877 -2.5467 4.6310 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 3.1827 1.1196 0.4421 27 1 1.6460 2.0067 0.5825 28 1 0.4313 1.3917 -2.4106 29 1 0.4086 2.7462 -1.2336 30 1 0.5938 3.9204 -3.3317 31 1 1.6729 2.6737 -4.0297 32 1 2.3168 4.8998 -2.1000 33 1 3.3560 4.1415 -3.3388 34 1 5.1767 3.4446 -1.8701 35 1 3.8241 -4.8164 1.2158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689233358.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:58 Heat of formation + Delta-G solvation = -152.988832 kcal Electronic energy + Delta-G solvation = -19080.256742 eV Core-core repulsion = 16011.152782 eV Total energy + Delta-G solvation = -3069.103959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.95940 -35.73388 -35.16761 -34.36871 -33.84930 -33.00278 -29.83323 -27.62222 -26.07734 -25.93991 -22.98156 -20.74438 -19.79878 -18.68382 -17.25926 -16.87165 -16.13051 -15.55398 -15.34432 -14.93404 -14.71958 -13.99172 -13.35037 -13.21949 -13.03210 -12.90184 -12.30401 -12.27907 -11.94719 -11.87239 -11.27748 -11.19466 -11.15162 -11.03672 -10.65625 -10.57436 -10.49912 -10.32783 -10.17976 -10.00415 -9.96547 -9.77592 -9.20390 -8.84734 -8.12971 -6.64357 -5.26628 2.34999 3.09238 3.15797 3.22616 4.09219 4.33341 4.56171 4.67859 4.69028 4.77288 5.00847 5.36334 5.43296 5.52725 5.64261 5.66739 5.70327 5.79082 5.89046 5.91435 5.97791 6.09883 6.15976 6.24198 6.26608 6.29633 6.37216 6.47596 6.74036 6.84970 7.37120 7.67203 7.86999 8.02289 8.93766 10.28929 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.033743 B = 0.006171 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.602311 B = 4536.474158 C = 4789.541349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -1.015 6.015 3 C 0.139 3.861 4 C -0.106 4.106 5 H 0.093 0.907 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.156 4.156 9 C 0.104 3.896 10 H 0.058 0.942 11 O -0.556 6.556 12 S 2.713 3.287 13 O -1.003 7.003 14 O -1.000 7.000 15 C -1.022 5.022 16 H 0.101 0.899 17 C 0.132 3.868 18 N -0.845 5.845 19 Si 0.920 3.080 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.263 1.263 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.370 0.630 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 14.671 -2.428 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.849 5.849 3 C 0.012 3.988 4 C -0.126 4.126 5 H 0.111 0.889 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.194 4.194 9 C 0.045 3.955 10 H 0.076 0.924 11 O -0.360 6.360 12 S 2.813 3.187 13 O -0.993 6.993 14 O -0.990 6.990 15 C -1.155 5.155 16 H 0.119 0.881 17 C -0.086 4.086 18 N -0.475 5.475 19 Si 0.744 3.256 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.187 1.187 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.216 0.784 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.816 13.489 -3.300 14.401 hybrid contribution 0.170 0.383 1.556 1.611 sum -3.646 13.872 -1.744 14.448 Atomic orbital electron populations 1.21277 0.80302 1.02020 1.00697 1.57934 1.14096 1.21886 1.90995 1.21111 0.97198 0.85908 0.94546 1.22506 0.94155 0.96981 0.98983 0.88893 1.22575 0.96622 0.98710 0.97513 1.22308 0.96925 0.98111 0.98694 1.22905 0.98704 0.98673 0.99131 1.22466 0.82383 0.94893 0.95779 0.92381 1.86718 1.19544 1.37094 1.92650 1.00634 0.71934 0.69663 0.76457 1.93350 1.69239 1.59341 1.77362 1.93383 1.38018 1.83781 1.83807 1.30660 1.54053 1.12784 1.18019 0.88096 1.24761 0.89686 0.94023 1.00108 1.69911 1.32758 1.11154 1.33664 0.86179 0.78511 0.79042 0.81901 1.19225 1.19965 1.18708 0.93763 0.91232 0.92542 0.89627 0.91653 0.90844 0.91310 0.91884 0.91526 0.91660 0.91145 0.78428 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.75 9.42 59.85 0.56 2.31 16 2 N -1.01 -20.91 3.16 -121.76 -0.38 -21.30 16 3 C 0.14 2.46 4.76 -4.04 -0.02 2.44 16 4 C -0.11 -1.73 2.82 -88.96 -0.25 -1.99 16 5 H 0.09 1.87 8.08 -51.93 -0.42 1.45 16 6 C -0.12 -1.52 5.33 -24.74 -0.13 -1.65 16 7 C -0.12 -1.37 6.83 -25.07 -0.17 -1.54 16 8 C -0.16 -1.67 6.61 -25.61 -0.17 -1.84 16 9 C 0.10 1.41 3.83 -25.61 -0.10 1.31 16 10 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 11 O -0.56 -8.34 13.22 -35.23 -0.47 -8.81 16 12 S 2.71 74.16 4.90 -107.50 -0.53 73.63 16 13 O -1.00 -30.04 17.17 -57.17 -0.98 -31.03 16 14 O -1.00 -29.96 16.83 -57.17 -0.96 -30.92 16 15 C -1.02 -28.81 9.75 30.60 0.30 -28.51 16 16 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 17 C 0.13 3.77 5.46 -17.82 -0.10 3.67 16 18 N -0.85 -25.44 13.11 55.43 0.73 -24.71 16 19 Si 0.92 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 23 H 0.04 0.69 7.10 -51.93 -0.37 0.32 16 24 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 25 H 0.06 0.75 7.94 -51.93 -0.41 0.33 16 26 H 0.09 1.67 7.49 -51.93 -0.39 1.28 16 27 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 28 H 0.07 1.01 7.15 -51.93 -0.37 0.63 16 29 H 0.07 0.78 7.96 -51.93 -0.41 0.37 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 34 H 0.37 3.53 9.11 45.56 0.42 3.95 16 35 H 0.29 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 300.98 15.07 4.54 4.54 Total: -1.00 -36.70 300.98 -7.57 -44.27 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.41 Total: 4.22 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -0.08 Total: -25.80 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.34 Total: -46.01 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: -2.41 Total: -70.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 74.16 SS G_CDS: -0.53 Total: 73.63 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -36.70 -7.57 -44.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689233358.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.721 kcal (2) G-P(sol) polarization free energy of solvation -36.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds