Wall clock time and date at job start Mon Mar 30 2020 05:12:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46508 * 119.99973 * 2 1
4 4 C 1.52995 * 109.47067 * 274.52899 * 3 2 1
5 5 H 1.09004 * 110.43427 * 307.70318 * 4 3 2
6 6 C 1.54883 * 110.48861 * 70.39321 * 4 3 2
7 7 C 1.54893 * 102.75080 * 156.62142 * 6 4 3
8 8 C 1.54273 * 104.19395 * 322.05477 * 7 6 4
9 9 C 1.53878 * 106.59692 * 23.61429 * 8 7 6
10 10 H 1.09005 * 110.03101 * 240.71468 * 9 8 7
11 11 O 1.42888 * 110.07653 * 119.30557 * 9 8 7
12 12 S 1.65600 * 120.00425 * 179.97438 * 2 1 3
13 13 O 1.42103 * 106.39783 * 28.46249 * 12 2 1
14 14 O 1.42094 * 106.40731 * 161.38245 * 12 2 1
15 15 C 1.76201 * 107.21540 * 274.92497 * 12 2 1
16 16 H 1.07995 * 120.00279 * 355.27889 * 15 12 2
17 17 C 1.37883 * 119.99752 * 175.27921 * 15 12 2
18 18 N 1.31516 * 119.99779 * 0.02562 * 17 15 12
19 19 Si 1.86796 * 119.99860 * 179.97438 * 17 15 12
20 20 H 1.48498 * 109.47010 * 90.00098 * 19 17 15
21 21 H 1.48499 * 109.47128 * 210.00116 * 19 17 15
22 22 H 1.48495 * 109.47350 * 330.00056 * 19 17 15
23 23 H 1.08999 * 109.46868 * 89.99953 * 1 2 3
24 24 H 1.08991 * 109.47386 * 210.00176 * 1 2 3
25 25 H 1.08998 * 109.47025 * 329.99920 * 1 2 3
26 26 H 1.09007 * 109.47087 * 154.52439 * 3 2 1
27 27 H 1.09000 * 109.46947 * 34.53032 * 3 2 1
28 28 H 1.09000 * 110.75534 * 274.93417 * 6 4 3
29 29 H 1.09001 * 110.76019 * 38.30694 * 6 4 3
30 30 H 1.08996 * 110.48730 * 203.38068 * 7 6 4
31 31 H 1.08999 * 110.60205 * 80.78651 * 7 6 4
32 32 H 1.08996 * 110.03543 * 264.32660 * 8 7 6
33 33 H 1.09001 * 110.07078 * 142.91638 * 8 7 6
34 34 H 0.96704 * 114.00558 * 62.80594 * 11 9 8
35 35 H 0.97003 * 119.99902 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.3538 1.7674 -1.4380
5 1 2.7817 0.9868 -2.0670
6 6 0.9887 2.2342 -2.0013
7 6 1.4008 3.2174 -3.1250
8 6 2.6267 3.9567 -2.5500
9 6 3.2328 3.0347 -1.4774
10 1 3.2169 3.5304 -0.5068
11 8 4.5741 2.6894 -1.8285
12 16 2.2931 -1.4341 0.0006
13 8 1.4558 -2.3811 -0.6486
14 8 3.6124 -1.1359 -0.4347
15 6 2.4287 -1.9572 1.6777
16 1 2.0710 -1.3199 2.4728
17 6 2.9916 -3.1803 1.9750
18 7 3.4277 -3.9561 1.0067
19 14 3.1361 -3.7346 3.7529
20 1 1.9129 -4.4827 4.1391
21 1 4.3226 -4.6150 3.9021
22 1 3.2877 -2.5467 4.6310
23 1 -0.3633 0.0000 -1.0277
24 1 -0.3634 -0.8899 0.5138
25 1 -0.3633 0.8900 0.5138
26 1 3.1827 1.1196 0.4421
27 1 1.6460 2.0067 0.5825
28 1 0.4313 1.3917 -2.4106
29 1 0.4086 2.7462 -1.2336
30 1 0.5938 3.9204 -3.3317
31 1 1.6729 2.6737 -4.0297
32 1 2.3168 4.8998 -2.1000
33 1 3.3560 4.1415 -3.3388
34 1 5.1767 3.4446 -1.8701
35 1 3.8241 -4.8164 1.2158
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000689233358.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:12:58
Heat of formation + Delta-G solvation = -184.257202 kcal
Electronic energy + Delta-G solvation = -19081.612640 eV
Core-core repulsion = 16011.152782 eV
Total energy + Delta-G solvation = -3070.459858 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.05643 -37.42785 -37.09955 -36.11005 -35.56179 -35.14646 -31.06238 -28.61537
-28.26187 -27.25805 -24.41815 -21.70580 -20.95225 -20.76896 -19.01853 -18.26972
-18.07501 -17.04184 -16.84095 -16.49001 -16.09632 -15.78640 -15.10681 -14.58444
-14.35682 -14.11388 -13.96421 -13.62665 -13.38419 -13.24796 -13.19875 -13.01627
-12.54756 -12.47121 -12.35634 -12.30894 -12.07489 -11.96574 -11.61170 -11.49170
-11.26110 -11.23989 -10.95913 -10.78008 -9.75923 -8.74824 -7.50099 0.32787
1.32219 1.33611 1.49859 2.19953 2.56414 2.84221 3.40952 3.63347
3.68970 3.82396 4.02240 4.13167 4.29184 4.40601 4.44576 4.56255
4.57790 4.66590 4.76157 4.82631 4.89954 4.96864 4.99109 5.06569
5.14898 5.21723 5.26735 5.36195 5.37456 5.49446 5.88809 6.04325
6.76325 7.04104 8.20203
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.033743 B = 0.006171 C = 0.005845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.602311 B = 4536.474158 C = 4789.541349
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.093 3.907
2 N -1.009 6.009
3 C 0.133 3.867
4 C -0.116 4.116
5 H 0.038 0.962
6 C -0.112 4.112
7 C -0.122 4.122
8 C -0.146 4.146
9 C 0.100 3.900
10 H 0.081 0.919
11 O -0.591 6.591
12 S 2.713 3.287
13 O -1.042 7.042
14 O -1.042 7.042
15 C -1.042 5.042
16 H 0.120 0.880
17 C 0.065 3.935
18 N -0.896 5.896
19 Si 0.993 3.007
20 H -0.251 1.251
21 H -0.263 1.263
22 H -0.247 1.247
23 H 0.054 0.946
24 H 0.055 0.945
25 H 0.106 0.894
26 H 0.057 0.943
27 H 0.115 0.885
28 H 0.058 0.942
29 H 0.098 0.902
30 H 0.091 0.909
31 H 0.050 0.950
32 H 0.096 0.904
33 H 0.073 0.927
34 H 0.391 0.609
35 H 0.299 0.701
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.303 17.222 -0.627 18.031
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 N -0.847 5.847
3 C 0.007 3.993
4 C -0.137 4.137
5 H 0.057 0.943
6 C -0.150 4.150
7 C -0.160 4.160
8 C -0.184 4.184
9 C 0.041 3.959
10 H 0.099 0.901
11 O -0.399 6.399
12 S 2.815 3.185
13 O -1.033 7.033
14 O -1.032 7.032
15 C -1.175 5.175
16 H 0.138 0.862
17 C -0.147 4.147
18 N -0.528 5.528
19 Si 0.811 3.189
20 H -0.175 1.175
21 H -0.187 1.187
22 H -0.170 1.170
23 H 0.072 0.928
24 H 0.074 0.926
25 H 0.125 0.875
26 H 0.075 0.925
27 H 0.133 0.867
28 H 0.077 0.923
29 H 0.117 0.883
30 H 0.110 0.890
31 H 0.069 0.931
32 H 0.115 0.885
33 H 0.091 0.909
34 H 0.240 0.760
35 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -5.186 16.065 -1.528 16.950
hybrid contribution 0.583 -0.343 0.938 1.157
sum -4.603 15.721 -0.589 16.392
Atomic orbital electron populations
1.21602 0.77695 1.03792 1.02045 1.57368 1.15613 1.20824 1.90946
1.21411 0.96298 0.85329 0.96237 1.22524 0.96988 0.97068 0.97101
0.94329 1.22584 0.94670 0.98916 0.98798 1.22330 0.98145 0.98115
0.97377 1.22849 0.98185 0.98993 0.98379 1.22602 0.81395 0.93799
0.98091 0.90096 1.86665 1.20990 1.39378 1.92911 1.00195 0.71280
0.70631 0.76426 1.93283 1.69779 1.61972 1.78218 1.93316 1.40647
1.84738 1.84487 1.31006 1.54196 1.13578 1.18724 0.86228 1.26119
0.88751 0.94005 1.05812 1.70018 1.34037 1.12111 1.36626 0.85090
0.79495 0.79333 0.74982 1.17523 1.18703 1.17009 0.92762 0.92615
0.87536 0.92469 0.86666 0.92280 0.88313 0.89002 0.93124 0.88506
0.90869 0.75959 0.89144
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 3.01 9.42 127.77 1.20 4.21 16
2 N -1.01 -41.57 3.16 -539.13 -1.70 -43.27 16
3 C 0.13 4.57 4.76 86.38 0.41 4.99 16
4 C -0.12 -3.78 2.82 -9.72 -0.03 -3.80 16
5 H 0.04 1.65 8.08 -2.38 -0.02 1.63 16
6 C -0.11 -2.68 5.33 31.88 0.17 -2.51 16
7 C -0.12 -2.41 6.83 31.67 0.22 -2.20 16
8 C -0.15 -2.66 6.61 31.32 0.21 -2.46 16
9 C 0.10 2.53 3.83 31.32 0.12 2.65 16
10 H 0.08 1.66 7.84 -2.38 -0.02 1.64 16
11 O -0.59 -17.81 13.22 -148.98 -1.97 -19.78 16
12 S 2.71 154.11 4.90 -56.49 -0.28 153.84 16
13 O -1.04 -65.40 17.17 -128.00 -2.20 -67.60 16
14 O -1.04 -66.09 16.83 -128.00 -2.15 -68.24 16
15 C -1.04 -59.49 9.75 67.74 0.66 -58.83 16
16 H 0.12 6.12 7.81 -2.91 -0.02 6.10 16
17 C 0.07 3.77 5.46 84.66 0.46 4.23 16
18 N -0.90 -55.60 13.11 21.45 0.28 -55.32 16
19 Si 0.99 42.26 29.54 68.60 2.03 44.29 16
20 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16
21 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16
22 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16
23 H 0.05 1.63 7.10 -2.39 -0.02 1.62 16
24 H 0.06 1.95 7.91 -2.39 -0.02 1.93 16
25 H 0.11 2.36 7.94 -2.39 -0.02 2.35 16
26 H 0.06 2.28 7.49 -2.38 -0.02 2.26 16
27 H 0.12 2.80 7.83 -2.39 -0.02 2.78 16
28 H 0.06 1.56 7.15 -2.39 -0.02 1.54 16
29 H 0.10 1.77 7.96 -2.39 -0.02 1.75 16
30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16
32 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16
33 H 0.07 1.31 7.96 -2.39 -0.02 1.29 16
34 H 0.39 7.21 9.11 -74.05 -0.67 6.54 16
35 H 0.30 16.58 8.31 -92.71 -0.77 15.80 16
Total: -1.00 -84.98 300.98 -2.16 -87.14
By element:
Atomic # 1 Polarization: 22.26 SS G_CDS: 0.41 Total: 22.67 kcal
Atomic # 6 Polarization: -57.14 SS G_CDS: 3.42 Total: -53.72 kcal
Atomic # 7 Polarization: -97.16 SS G_CDS: -1.42 Total: -98.59 kcal
Atomic # 8 Polarization: -149.30 SS G_CDS: -6.32 Total: -155.63 kcal
Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal
Atomic # 16 Polarization: 154.11 SS G_CDS: -0.28 Total: 153.84 kcal
Total: -84.98 -2.16 -87.14 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689233358.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.117 kcal
(2) G-P(sol) polarization free energy of solvation -84.977 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.163 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.140 kcal
(6) G-S(sol) free energy of system = (1) + (5) -184.257 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds