Wall clock time and date at job start Mon Mar 30 2020 05:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 119.99973 * 2 1 4 4 C 1.52995 * 109.47067 * 274.52899 * 3 2 1 5 5 H 1.09004 * 110.43427 * 307.70318 * 4 3 2 6 6 C 1.54883 * 110.48861 * 70.39321 * 4 3 2 7 7 C 1.54893 * 102.75080 * 156.62142 * 6 4 3 8 8 C 1.54273 * 104.19395 * 322.05477 * 7 6 4 9 9 C 1.53878 * 106.59692 * 23.61429 * 8 7 6 10 10 H 1.09005 * 110.03101 * 240.71468 * 9 8 7 11 11 O 1.42888 * 110.07653 * 119.30557 * 9 8 7 12 12 S 1.65600 * 120.00425 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.39783 * 28.46249 * 12 2 1 14 14 O 1.42094 * 106.40731 * 161.38245 * 12 2 1 15 15 C 1.76201 * 107.21540 * 274.92497 * 12 2 1 16 16 H 1.07995 * 120.00279 * 355.27889 * 15 12 2 17 17 C 1.37883 * 119.99752 * 175.27921 * 15 12 2 18 18 N 1.31516 * 119.99779 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 119.99860 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47010 * 90.00098 * 19 17 15 21 21 H 1.48499 * 109.47128 * 210.00116 * 19 17 15 22 22 H 1.48495 * 109.47350 * 330.00056 * 19 17 15 23 23 H 1.08999 * 109.46868 * 89.99953 * 1 2 3 24 24 H 1.08991 * 109.47386 * 210.00176 * 1 2 3 25 25 H 1.08998 * 109.47025 * 329.99920 * 1 2 3 26 26 H 1.09007 * 109.47087 * 154.52439 * 3 2 1 27 27 H 1.09000 * 109.46947 * 34.53032 * 3 2 1 28 28 H 1.09000 * 110.75534 * 274.93417 * 6 4 3 29 29 H 1.09001 * 110.76019 * 38.30694 * 6 4 3 30 30 H 1.08996 * 110.48730 * 203.38068 * 7 6 4 31 31 H 1.08999 * 110.60205 * 80.78651 * 7 6 4 32 32 H 1.08996 * 110.03543 * 264.32660 * 8 7 6 33 33 H 1.09001 * 110.07078 * 142.91638 * 8 7 6 34 34 H 0.96704 * 114.00558 * 62.80594 * 11 9 8 35 35 H 0.97003 * 119.99902 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3538 1.7674 -1.4380 5 1 2.7817 0.9868 -2.0670 6 6 0.9887 2.2342 -2.0013 7 6 1.4008 3.2174 -3.1250 8 6 2.6267 3.9567 -2.5500 9 6 3.2328 3.0347 -1.4774 10 1 3.2169 3.5304 -0.5068 11 8 4.5741 2.6894 -1.8285 12 16 2.2931 -1.4341 0.0006 13 8 1.4558 -2.3811 -0.6486 14 8 3.6124 -1.1359 -0.4347 15 6 2.4287 -1.9572 1.6777 16 1 2.0710 -1.3199 2.4728 17 6 2.9916 -3.1803 1.9750 18 7 3.4277 -3.9561 1.0067 19 14 3.1361 -3.7346 3.7529 20 1 1.9129 -4.4827 4.1391 21 1 4.3226 -4.6150 3.9021 22 1 3.2877 -2.5467 4.6310 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 3.1827 1.1196 0.4421 27 1 1.6460 2.0067 0.5825 28 1 0.4313 1.3917 -2.4106 29 1 0.4086 2.7462 -1.2336 30 1 0.5938 3.9204 -3.3317 31 1 1.6729 2.6737 -4.0297 32 1 2.3168 4.8998 -2.1000 33 1 3.3560 4.1415 -3.3388 34 1 5.1767 3.4446 -1.8701 35 1 3.8241 -4.8164 1.2158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689233358.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:58 Heat of formation + Delta-G solvation = -184.257202 kcal Electronic energy + Delta-G solvation = -19081.612640 eV Core-core repulsion = 16011.152782 eV Total energy + Delta-G solvation = -3070.459858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05643 -37.42785 -37.09955 -36.11005 -35.56179 -35.14646 -31.06238 -28.61537 -28.26187 -27.25805 -24.41815 -21.70580 -20.95225 -20.76896 -19.01853 -18.26972 -18.07501 -17.04184 -16.84095 -16.49001 -16.09632 -15.78640 -15.10681 -14.58444 -14.35682 -14.11388 -13.96421 -13.62665 -13.38419 -13.24796 -13.19875 -13.01627 -12.54756 -12.47121 -12.35634 -12.30894 -12.07489 -11.96574 -11.61170 -11.49170 -11.26110 -11.23989 -10.95913 -10.78008 -9.75923 -8.74824 -7.50099 0.32787 1.32219 1.33611 1.49859 2.19953 2.56414 2.84221 3.40952 3.63347 3.68970 3.82396 4.02240 4.13167 4.29184 4.40601 4.44576 4.56255 4.57790 4.66590 4.76157 4.82631 4.89954 4.96864 4.99109 5.06569 5.14898 5.21723 5.26735 5.36195 5.37456 5.49446 5.88809 6.04325 6.76325 7.04104 8.20203 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.033743 B = 0.006171 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.602311 B = 4536.474158 C = 4789.541349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.009 6.009 3 C 0.133 3.867 4 C -0.116 4.116 5 H 0.038 0.962 6 C -0.112 4.112 7 C -0.122 4.122 8 C -0.146 4.146 9 C 0.100 3.900 10 H 0.081 0.919 11 O -0.591 6.591 12 S 2.713 3.287 13 O -1.042 7.042 14 O -1.042 7.042 15 C -1.042 5.042 16 H 0.120 0.880 17 C 0.065 3.935 18 N -0.896 5.896 19 Si 0.993 3.007 20 H -0.251 1.251 21 H -0.263 1.263 22 H -0.247 1.247 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.391 0.609 35 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 17.222 -0.627 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.847 5.847 3 C 0.007 3.993 4 C -0.137 4.137 5 H 0.057 0.943 6 C -0.150 4.150 7 C -0.160 4.160 8 C -0.184 4.184 9 C 0.041 3.959 10 H 0.099 0.901 11 O -0.399 6.399 12 S 2.815 3.185 13 O -1.033 7.033 14 O -1.032 7.032 15 C -1.175 5.175 16 H 0.138 0.862 17 C -0.147 4.147 18 N -0.528 5.528 19 Si 0.811 3.189 20 H -0.175 1.175 21 H -0.187 1.187 22 H -0.170 1.170 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.125 0.875 26 H 0.075 0.925 27 H 0.133 0.867 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.240 0.760 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.186 16.065 -1.528 16.950 hybrid contribution 0.583 -0.343 0.938 1.157 sum -4.603 15.721 -0.589 16.392 Atomic orbital electron populations 1.21602 0.77695 1.03792 1.02045 1.57368 1.15613 1.20824 1.90946 1.21411 0.96298 0.85329 0.96237 1.22524 0.96988 0.97068 0.97101 0.94329 1.22584 0.94670 0.98916 0.98798 1.22330 0.98145 0.98115 0.97377 1.22849 0.98185 0.98993 0.98379 1.22602 0.81395 0.93799 0.98091 0.90096 1.86665 1.20990 1.39378 1.92911 1.00195 0.71280 0.70631 0.76426 1.93283 1.69779 1.61972 1.78218 1.93316 1.40647 1.84738 1.84487 1.31006 1.54196 1.13578 1.18724 0.86228 1.26119 0.88751 0.94005 1.05812 1.70018 1.34037 1.12111 1.36626 0.85090 0.79495 0.79333 0.74982 1.17523 1.18703 1.17009 0.92762 0.92615 0.87536 0.92469 0.86666 0.92280 0.88313 0.89002 0.93124 0.88506 0.90869 0.75959 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.01 9.42 127.77 1.20 4.21 16 2 N -1.01 -41.57 3.16 -539.13 -1.70 -43.27 16 3 C 0.13 4.57 4.76 86.38 0.41 4.99 16 4 C -0.12 -3.78 2.82 -9.72 -0.03 -3.80 16 5 H 0.04 1.65 8.08 -2.38 -0.02 1.63 16 6 C -0.11 -2.68 5.33 31.88 0.17 -2.51 16 7 C -0.12 -2.41 6.83 31.67 0.22 -2.20 16 8 C -0.15 -2.66 6.61 31.32 0.21 -2.46 16 9 C 0.10 2.53 3.83 31.32 0.12 2.65 16 10 H 0.08 1.66 7.84 -2.38 -0.02 1.64 16 11 O -0.59 -17.81 13.22 -148.98 -1.97 -19.78 16 12 S 2.71 154.11 4.90 -56.49 -0.28 153.84 16 13 O -1.04 -65.40 17.17 -128.00 -2.20 -67.60 16 14 O -1.04 -66.09 16.83 -128.00 -2.15 -68.24 16 15 C -1.04 -59.49 9.75 67.74 0.66 -58.83 16 16 H 0.12 6.12 7.81 -2.91 -0.02 6.10 16 17 C 0.07 3.77 5.46 84.66 0.46 4.23 16 18 N -0.90 -55.60 13.11 21.45 0.28 -55.32 16 19 Si 0.99 42.26 29.54 68.60 2.03 44.29 16 20 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 23 H 0.05 1.63 7.10 -2.39 -0.02 1.62 16 24 H 0.06 1.95 7.91 -2.39 -0.02 1.93 16 25 H 0.11 2.36 7.94 -2.39 -0.02 2.35 16 26 H 0.06 2.28 7.49 -2.38 -0.02 2.26 16 27 H 0.12 2.80 7.83 -2.39 -0.02 2.78 16 28 H 0.06 1.56 7.15 -2.39 -0.02 1.54 16 29 H 0.10 1.77 7.96 -2.39 -0.02 1.75 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.31 7.96 -2.39 -0.02 1.29 16 34 H 0.39 7.21 9.11 -74.05 -0.67 6.54 16 35 H 0.30 16.58 8.31 -92.71 -0.77 15.80 16 Total: -1.00 -84.98 300.98 -2.16 -87.14 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.41 Total: 22.67 kcal Atomic # 6 Polarization: -57.14 SS G_CDS: 3.42 Total: -53.72 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -1.42 Total: -98.59 kcal Atomic # 8 Polarization: -149.30 SS G_CDS: -6.32 Total: -155.63 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 154.11 SS G_CDS: -0.28 Total: 153.84 kcal Total: -84.98 -2.16 -87.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689233358.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.117 kcal (2) G-P(sol) polarization free energy of solvation -84.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds