Wall clock time and date at job start Mon Mar 30 2020 04:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 C 1.52996 * 109.47448 * 120.00500 * 2 1 3 5 5 H 1.08996 * 110.32956 * 57.74438 * 4 2 1 6 6 C 1.54477 * 110.37417 * 180.02562 * 4 2 1 7 7 C 1.54503 * 104.06611 * 142.81140 * 6 4 2 8 8 H 1.09006 * 110.50808 * 241.21404 * 7 6 4 9 9 N 1.46494 * 110.51479 * 118.64125 * 7 6 4 10 10 S 1.65601 * 120.00089 * 144.99947 * 9 7 6 11 11 O 1.42108 * 106.40271 * 311.45998 * 10 9 7 12 12 O 1.42098 * 106.40745 * 178.54212 * 10 9 7 13 13 C 1.76201 * 107.21953 * 64.99984 * 10 9 7 14 14 H 1.08002 * 120.00153 * 359.97438 * 13 10 9 15 15 C 1.37884 * 120.00146 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99707 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99956 * 180.27487 * 15 13 10 18 18 H 1.48497 * 109.47172 * 179.72730 * 17 15 13 19 19 H 1.48506 * 109.47132 * 299.72429 * 17 15 13 20 20 H 1.48501 * 109.47173 * 59.72550 * 17 15 13 21 21 C 1.54485 * 104.06378 * 359.97438 * 7 6 4 22 22 O 1.44423 * 104.80189 * 336.02465 * 21 7 6 23 23 H 1.08999 * 109.46929 * 299.99932 * 1 2 3 24 24 H 1.08998 * 109.47669 * 59.99235 * 1 2 3 25 25 H 1.09000 * 109.47126 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47028 * 240.00608 * 2 1 3 27 27 H 1.09008 * 109.47167 * 60.00458 * 3 2 1 28 28 H 1.08998 * 109.47507 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47667 * 300.00404 * 3 2 1 30 30 H 1.08996 * 110.51662 * 24.15937 * 6 4 2 31 31 H 1.09003 * 110.50928 * 261.45372 * 6 4 2 32 32 H 0.97001 * 120.00379 * 325.00085 * 9 7 6 33 33 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 34 34 H 1.08994 * 110.37062 * 94.85656 * 21 7 6 35 35 H 1.08997 * 110.37207 * 217.19331 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6520 -1.7393 1.2835 6 6 3.5846 -0.7329 1.2704 7 6 3.9409 -0.5484 2.7625 8 1 4.5156 0.3664 2.9076 9 7 4.6882 -1.7066 3.2588 10 16 5.8817 -1.4999 4.3881 11 8 6.7007 -0.4386 3.9167 12 8 6.3833 -2.7961 4.6837 13 6 5.1106 -0.9169 5.8612 14 1 4.0418 -0.7640 5.8872 15 6 5.8719 -0.6547 6.9805 16 7 7.1736 -0.8393 6.9484 17 14 5.0535 -0.0439 8.5446 18 1 6.0825 0.1548 9.5967 19 1 4.3675 1.2451 8.2735 20 1 4.0597 -1.0458 9.0071 21 6 2.5695 -0.4466 3.4662 22 8 1.6602 0.0047 2.4388 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.6767 1.9564 0.8901 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 3.9810 0.0919 0.6783 31 1 3.9645 -1.6859 0.9021 32 1 4.4840 -2.5945 2.9260 33 1 7.7093 -0.6545 7.7358 34 1 2.2627 -1.4224 3.8424 35 1 2.6131 0.2780 4.2793 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691407105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:55 Heat of formation + Delta-G solvation = -180.020964 kcal Electronic energy + Delta-G solvation = -18869.516759 eV Core-core repulsion = 15799.240599 eV Total energy + Delta-G solvation = -3070.276161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80720 -37.42717 -36.33401 -36.15528 -35.35765 -35.08957 -30.92179 -28.74753 -28.15203 -27.93771 -24.34794 -22.28487 -21.07700 -20.74647 -19.50469 -18.32907 -17.63937 -17.07220 -16.82079 -16.12707 -15.92995 -15.90153 -15.23333 -15.08720 -14.61778 -14.08501 -13.96576 -13.50965 -13.28782 -13.05059 -12.98753 -12.89848 -12.66428 -12.52519 -12.47970 -12.32660 -12.28085 -12.11626 -11.72696 -11.50908 -11.35355 -11.22514 -10.99588 -10.68932 -10.19753 -8.74875 -7.47483 0.32647 1.35619 1.37106 1.49853 2.20903 2.59335 2.80101 3.13086 3.57170 3.65024 3.75628 4.00762 4.11308 4.17900 4.24207 4.28430 4.48076 4.57341 4.68096 4.82050 4.82493 4.91497 4.93870 4.98725 5.12547 5.17815 5.22883 5.26257 5.32591 5.52160 5.57224 5.90543 5.91470 6.36594 6.79560 8.21532 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.029445 B = 0.005958 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.684934 B = 4698.550361 C = 5229.412564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.149 4.149 4 C 0.074 3.926 5 H 0.079 0.921 6 C -0.157 4.157 7 C 0.118 3.882 8 H 0.086 0.914 9 N -1.109 6.109 10 S 2.718 3.282 11 O -1.044 7.044 12 O -1.044 7.044 13 C -1.037 5.037 14 H 0.124 0.876 15 C 0.072 3.928 16 N -0.894 5.894 17 Si 0.988 3.012 18 H -0.266 1.266 19 H -0.250 1.250 20 H -0.251 1.251 21 C 0.030 3.970 22 O -0.374 6.374 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.417 0.583 33 H 0.298 0.702 34 H 0.074 0.926 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.190 1.761 -11.029 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.206 4.206 4 C 0.017 3.983 5 H 0.097 0.903 6 C -0.196 4.196 7 C 0.009 3.991 8 H 0.104 0.896 9 N -0.868 5.868 10 S 2.819 3.181 11 O -1.033 7.033 12 O -1.034 7.034 13 C -1.171 5.171 14 H 0.142 0.858 15 C -0.141 4.141 16 N -0.525 5.525 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.173 1.173 20 H -0.175 1.175 21 C -0.049 4.049 22 O -0.293 6.293 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.252 0.748 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.204 1.922 -11.062 16.583 hybrid contribution -0.196 -0.179 1.151 1.181 sum -12.400 1.744 -9.911 15.970 Atomic orbital electron populations 1.21754 0.94240 1.02029 1.01905 1.21222 0.96820 0.96802 0.95782 1.21851 1.01014 0.95838 1.01923 1.23225 0.92537 0.96011 0.86537 0.90284 1.23420 0.96827 1.05015 0.94313 1.22107 0.93135 0.88520 0.95304 0.89552 1.55420 1.56129 1.14967 1.60253 0.99940 0.72289 0.71943 0.73917 1.93311 1.68341 1.58760 1.82913 1.93316 1.80102 1.44081 1.85922 1.30885 1.07060 1.61383 1.17736 0.85791 1.25977 0.94507 0.89769 1.03890 1.69990 1.07191 1.41358 1.34009 0.85193 0.78972 0.80050 0.75193 1.19034 1.17349 1.17453 1.23967 0.87806 1.01290 0.91829 1.89109 1.55210 1.65019 1.19964 0.93502 0.91499 0.92272 0.88284 0.93352 0.92610 0.91483 0.88534 0.88427 0.74816 0.89151 0.90799 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.10 71.98 0.65 -1.70 16 2 C -0.09 -1.57 2.84 -10.80 -0.03 -1.60 16 3 C -0.15 -2.84 8.77 71.98 0.63 -2.21 16 4 C 0.07 1.65 3.00 31.09 0.09 1.75 16 5 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 6 C -0.16 -3.84 6.22 31.61 0.20 -3.65 16 7 C 0.12 3.87 3.79 46.01 0.17 4.04 16 8 H 0.09 3.20 7.57 -2.38 -0.02 3.18 16 9 N -1.11 -41.62 5.46 -165.17 -0.90 -42.53 16 10 S 2.72 142.80 5.00 -56.49 -0.28 142.52 16 11 O -1.04 -61.52 17.40 -128.00 -2.23 -63.75 16 12 O -1.04 -61.53 18.02 -128.00 -2.31 -63.84 16 13 C -1.04 -55.33 9.72 67.74 0.66 -54.67 16 14 H 0.12 5.83 7.56 -2.91 -0.02 5.81 16 15 C 0.07 3.92 5.46 84.66 0.46 4.38 16 16 N -0.89 -52.91 13.19 21.45 0.28 -52.63 16 17 Si 0.99 40.69 29.54 68.60 2.03 42.71 16 18 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 21 C 0.03 0.91 7.14 72.49 0.52 1.42 16 22 O -0.37 -10.41 10.12 -148.98 -1.51 -11.92 16 23 H 0.05 0.93 7.85 -2.39 -0.02 0.91 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.09 7.61 -2.38 -0.02 1.07 16 28 H 0.05 1.08 6.11 -2.39 -0.01 1.07 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 2.21 5.79 -2.39 -0.01 2.20 16 31 H 0.10 2.10 7.83 -2.39 -0.02 2.08 16 32 H 0.42 13.11 8.72 -96.75 -0.84 12.26 16 33 H 0.30 15.93 8.31 -92.70 -0.77 15.16 16 34 H 0.07 2.13 8.06 -2.39 -0.02 2.11 16 35 H 0.09 2.97 8.10 -2.39 -0.02 2.95 16 Total: -1.00 -73.48 300.30 -1.31 -74.79 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.25 Total: 26.87 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 3.36 Total: -52.22 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -0.62 Total: -95.16 kcal Atomic # 8 Polarization: -133.47 SS G_CDS: -6.04 Total: -139.51 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 142.80 SS G_CDS: -0.28 Total: 142.52 kcal Total: -73.48 -1.31 -74.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691407105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.234 kcal (2) G-P(sol) polarization free energy of solvation -73.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds