Wall clock time and date at job start Mon Mar 30 2020 04:12:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.47107 * 2 1
4 4 C 1.52996 * 109.47448 * 120.00500 * 2 1 3
5 5 H 1.08996 * 110.32956 * 57.74438 * 4 2 1
6 6 C 1.54477 * 110.37417 * 180.02562 * 4 2 1
7 7 C 1.54503 * 104.06611 * 142.81140 * 6 4 2
8 8 H 1.09006 * 110.50808 * 241.21404 * 7 6 4
9 9 N 1.46494 * 110.51479 * 118.64125 * 7 6 4
10 10 S 1.65601 * 120.00089 * 144.99947 * 9 7 6
11 11 O 1.42108 * 106.40271 * 311.45998 * 10 9 7
12 12 O 1.42098 * 106.40745 * 178.54212 * 10 9 7
13 13 C 1.76201 * 107.21953 * 64.99984 * 10 9 7
14 14 H 1.08002 * 120.00153 * 359.97438 * 13 10 9
15 15 C 1.37884 * 120.00146 * 180.02562 * 13 10 9
16 16 N 1.31514 * 119.99707 * 0.02562 * 15 13 10
17 17 Si 1.86796 * 119.99956 * 180.27487 * 15 13 10
18 18 H 1.48497 * 109.47172 * 179.72730 * 17 15 13
19 19 H 1.48506 * 109.47132 * 299.72429 * 17 15 13
20 20 H 1.48501 * 109.47173 * 59.72550 * 17 15 13
21 21 C 1.54485 * 104.06378 * 359.97438 * 7 6 4
22 22 O 1.44423 * 104.80189 * 336.02465 * 21 7 6
23 23 H 1.08999 * 109.46929 * 299.99932 * 1 2 3
24 24 H 1.08998 * 109.47669 * 59.99235 * 1 2 3
25 25 H 1.09000 * 109.47126 * 180.02562 * 1 2 3
26 26 H 1.08997 * 109.47028 * 240.00608 * 2 1 3
27 27 H 1.09008 * 109.47167 * 60.00458 * 3 2 1
28 28 H 1.08998 * 109.47507 * 179.97438 * 3 2 1
29 29 H 1.08995 * 109.47667 * 300.00404 * 3 2 1
30 30 H 1.08996 * 110.51662 * 24.15937 * 6 4 2
31 31 H 1.09003 * 110.50928 * 261.45372 * 6 4 2
32 32 H 0.97001 * 120.00379 * 325.00085 * 9 7 6
33 33 H 0.97005 * 119.99656 * 179.97438 * 16 15 13
34 34 H 1.08994 * 110.37062 * 94.85656 * 21 7 6
35 35 H 1.08997 * 110.37207 * 217.19331 * 21 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2491
5 1 1.6520 -1.7393 1.2835
6 6 3.5846 -0.7329 1.2704
7 6 3.9409 -0.5484 2.7625
8 1 4.5156 0.3664 2.9076
9 7 4.6882 -1.7066 3.2588
10 16 5.8817 -1.4999 4.3881
11 8 6.7007 -0.4386 3.9167
12 8 6.3833 -2.7961 4.6837
13 6 5.1106 -0.9169 5.8612
14 1 4.0418 -0.7640 5.8872
15 6 5.8719 -0.6547 6.9805
16 7 7.1736 -0.8393 6.9484
17 14 5.0535 -0.0439 8.5446
18 1 6.0825 0.1548 9.5967
19 1 4.3675 1.2451 8.2735
20 1 4.0597 -1.0458 9.0071
21 6 2.5695 -0.4466 3.4662
22 8 1.6602 0.0047 2.4388
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5139 -0.8899
25 1 -0.3633 -1.0277 0.0005
26 1 1.8933 -0.5137 -0.8900
27 1 1.6767 1.9564 0.8901
28 1 3.1299 1.4426 0.0005
29 1 1.6766 1.9564 -0.8899
30 1 3.9810 0.0919 0.6783
31 1 3.9645 -1.6859 0.9021
32 1 4.4840 -2.5945 2.9260
33 1 7.7093 -0.6545 7.7358
34 1 2.2627 -1.4224 3.8424
35 1 2.6131 0.2780 4.2793
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000691407105.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:12:55
Heat of formation + Delta-G solvation = -180.020964 kcal
Electronic energy + Delta-G solvation = -18869.516759 eV
Core-core repulsion = 15799.240599 eV
Total energy + Delta-G solvation = -3070.276161 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.80720 -37.42717 -36.33401 -36.15528 -35.35765 -35.08957 -30.92179 -28.74753
-28.15203 -27.93771 -24.34794 -22.28487 -21.07700 -20.74647 -19.50469 -18.32907
-17.63937 -17.07220 -16.82079 -16.12707 -15.92995 -15.90153 -15.23333 -15.08720
-14.61778 -14.08501 -13.96576 -13.50965 -13.28782 -13.05059 -12.98753 -12.89848
-12.66428 -12.52519 -12.47970 -12.32660 -12.28085 -12.11626 -11.72696 -11.50908
-11.35355 -11.22514 -10.99588 -10.68932 -10.19753 -8.74875 -7.47483 0.32647
1.35619 1.37106 1.49853 2.20903 2.59335 2.80101 3.13086 3.57170
3.65024 3.75628 4.00762 4.11308 4.17900 4.24207 4.28430 4.48076
4.57341 4.68096 4.82050 4.82493 4.91497 4.93870 4.98725 5.12547
5.17815 5.22883 5.26257 5.32591 5.52160 5.57224 5.90543 5.91470
6.36594 6.79560 8.21532
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.029445 B = 0.005958 C = 0.005353
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.684934 B = 4698.550361 C = 5229.412564
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.088 4.088
3 C -0.149 4.149
4 C 0.074 3.926
5 H 0.079 0.921
6 C -0.157 4.157
7 C 0.118 3.882
8 H 0.086 0.914
9 N -1.109 6.109
10 S 2.718 3.282
11 O -1.044 7.044
12 O -1.044 7.044
13 C -1.037 5.037
14 H 0.124 0.876
15 C 0.072 3.928
16 N -0.894 5.894
17 Si 0.988 3.012
18 H -0.266 1.266
19 H -0.250 1.250
20 H -0.251 1.251
21 C 0.030 3.970
22 O -0.374 6.374
23 H 0.046 0.954
24 H 0.066 0.934
25 H 0.058 0.942
26 H 0.099 0.901
27 H 0.047 0.953
28 H 0.055 0.945
29 H 0.066 0.934
30 H 0.096 0.904
31 H 0.097 0.903
32 H 0.417 0.583
33 H 0.298 0.702
34 H 0.074 0.926
35 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.190 1.761 -11.029 17.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.106 4.106
3 C -0.206 4.206
4 C 0.017 3.983
5 H 0.097 0.903
6 C -0.196 4.196
7 C 0.009 3.991
8 H 0.104 0.896
9 N -0.868 5.868
10 S 2.819 3.181
11 O -1.033 7.033
12 O -1.034 7.034
13 C -1.171 5.171
14 H 0.142 0.858
15 C -0.141 4.141
16 N -0.525 5.525
17 Si 0.806 3.194
18 H -0.190 1.190
19 H -0.173 1.173
20 H -0.175 1.175
21 C -0.049 4.049
22 O -0.293 6.293
23 H 0.065 0.935
24 H 0.085 0.915
25 H 0.077 0.923
26 H 0.117 0.883
27 H 0.066 0.934
28 H 0.074 0.926
29 H 0.085 0.915
30 H 0.115 0.885
31 H 0.116 0.884
32 H 0.252 0.748
33 H 0.108 0.892
34 H 0.092 0.908
35 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -12.204 1.922 -11.062 16.583
hybrid contribution -0.196 -0.179 1.151 1.181
sum -12.400 1.744 -9.911 15.970
Atomic orbital electron populations
1.21754 0.94240 1.02029 1.01905 1.21222 0.96820 0.96802 0.95782
1.21851 1.01014 0.95838 1.01923 1.23225 0.92537 0.96011 0.86537
0.90284 1.23420 0.96827 1.05015 0.94313 1.22107 0.93135 0.88520
0.95304 0.89552 1.55420 1.56129 1.14967 1.60253 0.99940 0.72289
0.71943 0.73917 1.93311 1.68341 1.58760 1.82913 1.93316 1.80102
1.44081 1.85922 1.30885 1.07060 1.61383 1.17736 0.85791 1.25977
0.94507 0.89769 1.03890 1.69990 1.07191 1.41358 1.34009 0.85193
0.78972 0.80050 0.75193 1.19034 1.17349 1.17453 1.23967 0.87806
1.01290 0.91829 1.89109 1.55210 1.65019 1.19964 0.93502 0.91499
0.92272 0.88284 0.93352 0.92610 0.91483 0.88534 0.88427 0.74816
0.89151 0.90799 0.88718
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 24.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.35 9.10 71.98 0.65 -1.70 16
2 C -0.09 -1.57 2.84 -10.80 -0.03 -1.60 16
3 C -0.15 -2.84 8.77 71.98 0.63 -2.21 16
4 C 0.07 1.65 3.00 31.09 0.09 1.75 16
5 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16
6 C -0.16 -3.84 6.22 31.61 0.20 -3.65 16
7 C 0.12 3.87 3.79 46.01 0.17 4.04 16
8 H 0.09 3.20 7.57 -2.38 -0.02 3.18 16
9 N -1.11 -41.62 5.46 -165.17 -0.90 -42.53 16
10 S 2.72 142.80 5.00 -56.49 -0.28 142.52 16
11 O -1.04 -61.52 17.40 -128.00 -2.23 -63.75 16
12 O -1.04 -61.53 18.02 -128.00 -2.31 -63.84 16
13 C -1.04 -55.33 9.72 67.74 0.66 -54.67 16
14 H 0.12 5.83 7.56 -2.91 -0.02 5.81 16
15 C 0.07 3.92 5.46 84.66 0.46 4.38 16
16 N -0.89 -52.91 13.19 21.45 0.28 -52.63 16
17 Si 0.99 40.69 29.54 68.60 2.03 42.71 16
18 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16
19 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16
20 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16
21 C 0.03 0.91 7.14 72.49 0.52 1.42 16
22 O -0.37 -10.41 10.12 -148.98 -1.51 -11.92 16
23 H 0.05 0.93 7.85 -2.39 -0.02 0.91 16
24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
26 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16
27 H 0.05 1.09 7.61 -2.38 -0.02 1.07 16
28 H 0.05 1.08 6.11 -2.39 -0.01 1.07 16
29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
30 H 0.10 2.21 5.79 -2.39 -0.01 2.20 16
31 H 0.10 2.10 7.83 -2.39 -0.02 2.08 16
32 H 0.42 13.11 8.72 -96.75 -0.84 12.26 16
33 H 0.30 15.93 8.31 -92.70 -0.77 15.16 16
34 H 0.07 2.13 8.06 -2.39 -0.02 2.11 16
35 H 0.09 2.97 8.10 -2.39 -0.02 2.95 16
Total: -1.00 -73.48 300.30 -1.31 -74.79
By element:
Atomic # 1 Polarization: 26.63 SS G_CDS: 0.25 Total: 26.87 kcal
Atomic # 6 Polarization: -55.58 SS G_CDS: 3.36 Total: -52.22 kcal
Atomic # 7 Polarization: -94.54 SS G_CDS: -0.62 Total: -95.16 kcal
Atomic # 8 Polarization: -133.47 SS G_CDS: -6.04 Total: -139.51 kcal
Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal
Atomic # 16 Polarization: 142.80 SS G_CDS: -0.28 Total: 142.52 kcal
Total: -73.48 -1.31 -74.79 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691407105.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -105.234 kcal
(2) G-P(sol) polarization free energy of solvation -73.476 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.787 kcal
(6) G-S(sol) free energy of system = (1) + (5) -180.021 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds