Wall clock time and date at job start Mon Mar 30 2020 05:18:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42898 * 113.99979 * 2 1
4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1
5 5 C 1.53005 * 109.47314 * 149.99762 * 3 2 1
6 6 N 1.46504 * 109.46944 * 300.00219 * 5 3 2
7 7 S 1.65592 * 119.99978 * 164.99999 * 6 5 3
8 8 O 1.42104 * 106.40248 * 178.53480 * 7 6 5
9 9 O 1.42101 * 106.40361 * 311.45763 * 7 6 5
10 10 C 1.76208 * 107.21939 * 64.99574 * 7 6 5
11 11 H 1.07994 * 119.99746 * 0.02562 * 10 7 6
12 12 C 1.37877 * 119.99893 * 180.02562 * 10 7 6
13 13 N 1.31518 * 119.99693 * 180.02562 * 12 10 7
14 14 Si 1.86801 * 120.00023 * 359.97438 * 12 10 7
15 15 H 1.48507 * 109.46649 * 90.00246 * 14 12 10
16 16 H 1.48494 * 109.47126 * 209.99922 * 14 12 10
17 17 H 1.48491 * 109.47419 * 330.00457 * 14 12 10
18 18 C 1.52998 * 109.46963 * 269.99561 * 3 2 1
19 19 C 1.53784 * 113.61409 * 157.49722 * 18 3 2
20 20 C 1.53783 * 87.08257 * 220.02106 * 19 18 3
21 21 C 1.53781 * 87.08088 * 25.43031 * 20 19 18
22 22 H 1.09002 * 109.47382 * 300.00227 * 1 2 3
23 23 H 1.09001 * 109.46938 * 180.02562 * 1 2 3
24 24 H 1.09004 * 109.46926 * 60.00334 * 1 2 3
25 25 H 1.09004 * 109.46997 * 59.99364 * 5 3 2
26 26 H 1.08991 * 109.47298 * 179.97438 * 5 3 2
27 27 H 0.97004 * 119.99991 * 344.99310 * 6 5 3
28 28 H 0.96998 * 119.99278 * 180.02562 * 13 12 10
29 29 H 1.08999 * 112.85275 * 288.80229 * 18 3 2
30 30 H 1.08999 * 113.61476 * 334.56801 * 19 18 3
31 31 H 1.09000 * 113.61166 * 105.47188 * 19 18 3
32 32 H 1.09005 * 113.61404 * 270.88567 * 20 19 18
33 33 H 1.08997 * 113.69014 * 139.99096 * 20 19 18
34 34 H 1.08999 * 113.61857 * 220.02110 * 21 20 19
35 35 H 1.09000 * 113.61348 * 89.11458 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3449 1.9994 0.5138
5 6 3.3589 1.2633 0.7213
6 7 3.1602 0.8172 2.1026
7 16 4.4557 0.3213 3.0070
8 8 3.9454 -0.0098 4.2912
9 8 5.1819 -0.5950 2.1992
10 6 5.5008 1.7219 3.2328
11 1 5.2267 2.6748 2.8048
12 6 6.6685 1.6013 3.9561
13 7 7.4482 2.6468 4.1251
14 14 7.1421 -0.0467 4.6971
15 1 7.9598 -0.8114 3.7213
16 1 7.9298 0.1757 5.9361
17 1 5.9136 -0.8146 5.0226
18 6 2.2178 1.7713 -1.4425
19 6 2.3078 3.2994 -1.5894
20 6 1.4687 3.1470 -2.8691
21 6 0.9164 1.8484 -2.2582
22 1 -0.3634 0.5139 0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5138 -0.8901
25 1 4.0242 0.5693 0.2076
26 1 3.8024 2.2589 0.7209
27 1 2.2698 0.8123 2.4873
28 1 8.2699 2.5618 4.6336
29 1 3.0197 1.2346 -1.9494
30 1 1.7980 3.8452 -0.7955
31 1 3.3197 3.6616 -1.7713
32 1 2.0663 2.9876 -3.7667
33 1 0.7159 3.9253 -2.9945
34 1 0.8049 1.0392 -2.9799
35 1 0.0262 1.9974 -1.6471
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000692151942.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:02
Heat of formation + Delta-G solvation = -109.566590 kcal
Electronic energy + Delta-G solvation = -18705.697069 eV
Core-core repulsion = 15638.476039 eV
Total energy + Delta-G solvation = -3067.221030 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.72011 -36.94859 -35.55485 -34.37733 -34.32718 -32.98868 -29.57501 -26.47555
-26.36032 -25.66439 -24.51249 -21.47623 -19.64979 -18.98599 -17.45205 -16.73939
-16.63730 -16.01194 -15.68758 -15.25357 -14.79599 -14.30516 -13.83480 -13.61162
-13.24405 -13.07150 -12.73281 -12.67962 -12.36976 -12.11020 -11.71921 -11.41040
-11.29896 -11.25152 -10.78934 -10.72973 -10.53642 -10.42570 -10.38222 -10.26487
-9.81067 -9.27488 -9.17156 -9.14950 -8.48283 -6.77168 -5.30374 2.16217
3.10848 3.21845 3.31569 3.77545 3.99556 4.35234 4.48990 4.59883
4.63566 4.66193 4.78830 5.06742 5.27597 5.29884 5.37629 5.42779
5.46205 5.59504 5.62853 5.72067 5.76537 5.78313 5.90944 5.99982
6.09690 6.15913 6.28897 6.37988 6.65345 7.29631 7.51186 7.82207
8.23523 8.74406 10.35151
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.031785 B = 0.005857 C = 0.005231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 880.693583 B = 4779.190516 C = 5351.874205
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 O -0.372 6.372
3 C 0.092 3.908
4 H 0.066 0.934
5 C 0.130 3.870
6 N -1.120 6.120
7 S 2.678 3.322
8 O -1.011 7.011
9 O -1.011 7.011
10 C -1.016 5.016
11 H 0.121 0.879
12 C 0.153 3.847
13 N -0.825 5.825
14 Si 0.802 3.198
15 H -0.246 1.246
16 H -0.256 1.256
17 H -0.220 1.220
18 C -0.132 4.132
19 C -0.136 4.136
20 C -0.142 4.142
21 C -0.137 4.137
22 H 0.039 0.961
23 H 0.082 0.918
24 H 0.047 0.953
25 H 0.083 0.917
26 H 0.077 0.923
27 H 0.404 0.596
28 H 0.280 0.720
29 H 0.101 0.899
30 H 0.082 0.918
31 H 0.073 0.927
32 H 0.079 0.921
33 H 0.065 0.935
34 H 0.067 0.933
35 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.630 0.946 -11.328 16.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.290 6.290
3 C 0.033 3.967
4 H 0.084 0.916
5 C 0.003 3.997
6 N -0.875 5.875
7 S 2.779 3.221
8 O -1.001 7.001
9 O -1.001 7.001
10 C -1.150 5.150
11 H 0.139 0.861
12 C -0.066 4.066
13 N -0.454 5.454
14 Si 0.622 3.378
15 H -0.170 1.170
16 H -0.180 1.180
17 H -0.142 1.142
18 C -0.151 4.151
19 C -0.174 4.174
20 C -0.179 4.179
21 C -0.174 4.174
22 H 0.057 0.943
23 H 0.100 0.900
24 H 0.065 0.935
25 H 0.101 0.899
26 H 0.095 0.905
27 H 0.235 0.765
28 H 0.090 0.910
29 H 0.119 0.881
30 H 0.101 0.899
31 H 0.092 0.908
32 H 0.098 0.902
33 H 0.084 0.916
34 H 0.086 0.914
35 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -12.049 -0.015 -11.033 16.337
hybrid contribution -0.030 0.410 0.439 0.602
sum -12.079 0.395 -10.594 16.072
Atomic orbital electron populations
1.22983 0.81956 1.02625 1.00022 1.88002 1.18880 1.27257 1.94876
1.22430 0.95085 0.84916 0.94245 0.91622 1.21239 0.95867 1.00773
0.81838 1.55312 1.23932 1.85685 1.22586 1.01263 0.73013 0.75716
0.72067 1.93467 1.80645 1.85671 1.40316 1.93401 1.71647 1.64890
1.70128 1.30500 1.20423 1.16865 1.47230 0.86149 1.24430 0.93814
0.96996 0.91398 1.69994 1.11507 1.29807 1.34126 0.87849 0.84225
0.84224 0.81465 1.16990 1.17984 1.14185 1.23082 0.99231 0.96849
0.95933 1.22951 1.01061 0.95398 0.97960 1.22822 0.99617 0.97830
0.97674 1.22983 0.97166 0.98021 0.99240 0.94266 0.89982 0.93501
0.89865 0.90490 0.76472 0.90964 0.88087 0.89909 0.90799 0.90189
0.91634 0.91375 0.90132
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.22 10.57 101.05 1.07 1.29 16
2 O -0.37 -5.41 10.16 -35.23 -0.36 -5.76 16
3 C 0.09 1.25 2.12 -26.73 -0.06 1.19 16
4 H 0.07 0.79 7.59 -51.93 -0.39 0.40 16
5 C 0.13 2.22 5.91 -4.04 -0.02 2.20 16
6 N -1.12 -22.10 5.86 -10.61 -0.06 -22.17 16
7 S 2.68 68.37 4.24 -107.50 -0.46 67.91 16
8 O -1.01 -27.75 16.02 -57.17 -0.92 -28.67 16
9 O -1.01 -27.77 16.30 -57.17 -0.93 -28.70 16
10 C -1.02 -28.54 10.26 30.60 0.31 -28.23 16
11 H 0.12 3.37 8.06 -52.49 -0.42 2.95 16
12 C 0.15 4.44 5.47 -17.82 -0.10 4.34 16
13 N -0.83 -24.00 13.96 55.43 0.77 -23.23 16
14 Si 0.80 20.94 26.54 -169.99 -4.51 16.43 16
15 H -0.25 -6.28 7.11 56.52 0.40 -5.88 16
16 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16
17 H -0.22 -5.87 5.61 56.52 0.32 -5.55 16
18 C -0.13 -1.49 3.36 -89.81 -0.30 -1.79 16
19 C -0.14 -1.36 7.63 -25.92 -0.20 -1.56 16
20 C -0.14 -1.22 8.08 -25.92 -0.21 -1.43 16
21 C -0.14 -1.27 6.18 -25.92 -0.16 -1.43 16
22 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16
23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
24 H 0.05 0.41 4.95 -51.93 -0.26 0.16 16
25 H 0.08 1.52 7.75 -51.93 -0.40 1.12 16
26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16
27 H 0.40 6.97 8.65 -34.47 -0.30 6.67 16
28 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16
29 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16
30 H 0.08 0.80 7.96 -51.93 -0.41 0.38 16
31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
35 H 0.08 0.69 6.33 -51.93 -0.33 0.36 16
LS Contribution 297.15 15.07 4.48 4.48
Total: -1.00 -33.67 297.15 -6.76 -40.44
By element:
Atomic # 1 Polarization: 9.80 SS G_CDS: -5.12 Total: 4.68 kcal
Atomic # 6 Polarization: -25.75 SS G_CDS: 0.34 Total: -25.41 kcal
Atomic # 7 Polarization: -46.10 SS G_CDS: 0.71 Total: -45.39 kcal
Atomic # 8 Polarization: -60.93 SS G_CDS: -2.21 Total: -63.14 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -4.51 Total: 16.43 kcal
Atomic # 16 Polarization: 68.37 SS G_CDS: -0.46 Total: 67.91 kcal
Total LS contribution 4.48 Total: 4.48 kcal
Total: -33.67 -6.76 -40.44 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000692151942.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.131 kcal
(2) G-P(sol) polarization free energy of solvation -33.673 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.804 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.567 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds