Wall clock time and date at job start Mon Mar 30 2020 05:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.53005 * 109.47314 * 149.99762 * 3 2 1 6 6 N 1.46504 * 109.46944 * 300.00219 * 5 3 2 7 7 S 1.65592 * 119.99978 * 164.99999 * 6 5 3 8 8 O 1.42104 * 106.40248 * 178.53480 * 7 6 5 9 9 O 1.42101 * 106.40361 * 311.45763 * 7 6 5 10 10 C 1.76208 * 107.21939 * 64.99574 * 7 6 5 11 11 H 1.07994 * 119.99746 * 0.02562 * 10 7 6 12 12 C 1.37877 * 119.99893 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99693 * 180.02562 * 12 10 7 14 14 Si 1.86801 * 120.00023 * 359.97438 * 12 10 7 15 15 H 1.48507 * 109.46649 * 90.00246 * 14 12 10 16 16 H 1.48494 * 109.47126 * 209.99922 * 14 12 10 17 17 H 1.48491 * 109.47419 * 330.00457 * 14 12 10 18 18 C 1.52998 * 109.46963 * 269.99561 * 3 2 1 19 19 C 1.53784 * 113.61409 * 157.49722 * 18 3 2 20 20 C 1.53783 * 87.08257 * 220.02106 * 19 18 3 21 21 C 1.53781 * 87.08088 * 25.43031 * 20 19 18 22 22 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 23 23 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 25 25 H 1.09004 * 109.46997 * 59.99364 * 5 3 2 26 26 H 1.08991 * 109.47298 * 179.97438 * 5 3 2 27 27 H 0.97004 * 119.99991 * 344.99310 * 6 5 3 28 28 H 0.96998 * 119.99278 * 180.02562 * 13 12 10 29 29 H 1.08999 * 112.85275 * 288.80229 * 18 3 2 30 30 H 1.08999 * 113.61476 * 334.56801 * 19 18 3 31 31 H 1.09000 * 113.61166 * 105.47188 * 19 18 3 32 32 H 1.09005 * 113.61404 * 270.88567 * 20 19 18 33 33 H 1.08997 * 113.69014 * 139.99096 * 20 19 18 34 34 H 1.08999 * 113.61857 * 220.02110 * 21 20 19 35 35 H 1.09000 * 113.61348 * 89.11458 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2633 0.7213 6 7 3.1602 0.8172 2.1026 7 16 4.4557 0.3213 3.0070 8 8 3.9454 -0.0098 4.2912 9 8 5.1819 -0.5950 2.1992 10 6 5.5008 1.7219 3.2328 11 1 5.2267 2.6748 2.8048 12 6 6.6685 1.6013 3.9561 13 7 7.4482 2.6468 4.1251 14 14 7.1421 -0.0467 4.6971 15 1 7.9598 -0.8114 3.7213 16 1 7.9298 0.1757 5.9361 17 1 5.9136 -0.8146 5.0226 18 6 2.2178 1.7713 -1.4425 19 6 2.3078 3.2994 -1.5894 20 6 1.4687 3.1470 -2.8691 21 6 0.9164 1.8484 -2.2582 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 4.0242 0.5693 0.2076 26 1 3.8024 2.2589 0.7209 27 1 2.2698 0.8123 2.4873 28 1 8.2699 2.5618 4.6336 29 1 3.0197 1.2346 -1.9494 30 1 1.7980 3.8452 -0.7955 31 1 3.3197 3.6616 -1.7713 32 1 2.0663 2.9876 -3.7667 33 1 0.7159 3.9253 -2.9945 34 1 0.8049 1.0392 -2.9799 35 1 0.0262 1.9974 -1.6471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692151942.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:01 Heat of formation + Delta-G solvation = -136.290461 kcal Electronic energy + Delta-G solvation = -18706.855903 eV Core-core repulsion = 15638.476039 eV Total energy + Delta-G solvation = -3068.379864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62758 -37.89277 -37.65816 -36.47935 -35.85014 -35.17608 -30.74091 -28.55739 -27.30125 -26.44311 -25.63270 -22.57568 -21.08809 -20.37362 -19.42518 -18.61498 -17.76171 -17.51577 -17.03160 -16.49731 -16.04820 -15.92533 -15.49449 -15.04267 -14.95849 -14.62197 -14.24747 -13.79176 -13.48900 -13.40182 -13.11315 -12.89083 -12.82707 -12.69516 -12.56170 -12.35476 -12.20143 -11.84970 -11.59726 -11.33521 -11.22487 -11.19327 -11.06381 -10.34569 -10.09912 -8.96399 -7.51827 0.16456 1.05274 1.14801 1.22573 1.89974 2.42023 2.56289 2.84372 3.33066 3.59193 3.78359 3.84000 4.00040 4.10230 4.19676 4.30298 4.45727 4.54143 4.60494 4.67053 4.73242 4.85612 4.90486 4.96560 4.98594 5.11709 5.13950 5.17459 5.36720 5.39447 5.61707 6.01503 6.28722 6.36242 6.54193 8.21004 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.031785 B = 0.005857 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.693583 B = 4779.190516 C = 5351.874205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.401 6.401 3 C 0.100 3.900 4 H 0.084 0.916 5 C 0.118 3.882 6 N -1.105 6.105 7 S 2.698 3.302 8 O -1.031 7.031 9 O -1.032 7.032 10 C -1.035 5.035 11 H 0.110 0.890 12 C 0.109 3.891 13 N -0.852 5.852 14 Si 0.823 3.177 15 H -0.240 1.240 16 H -0.218 1.218 17 H -0.231 1.231 18 C -0.139 4.139 19 C -0.139 4.139 20 C -0.134 4.134 21 C -0.130 4.130 22 H 0.048 0.952 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.418 0.582 28 H 0.291 0.709 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.963 1.031 -11.973 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.320 6.320 3 C 0.040 3.960 4 H 0.102 0.898 5 C -0.008 4.008 6 N -0.865 5.865 7 S 2.798 3.202 8 O -1.021 7.021 9 O -1.022 7.022 10 C -1.168 5.168 11 H 0.128 0.872 12 C -0.108 4.108 13 N -0.482 5.482 14 Si 0.641 3.359 15 H -0.163 1.163 16 H -0.141 1.141 17 H -0.154 1.154 18 C -0.159 4.159 19 C -0.177 4.177 20 C -0.171 4.171 21 C -0.167 4.167 22 H 0.066 0.934 23 H 0.108 0.892 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.252 0.748 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.371 0.088 -11.663 17.743 hybrid contribution 0.319 0.418 0.580 0.783 sum -13.052 0.506 -11.083 17.130 Atomic orbital electron populations 1.23210 0.79935 1.03737 1.01417 1.87955 1.21168 1.27774 1.95125 1.22382 0.93142 0.85215 0.95227 0.89825 1.21524 0.98436 1.00475 0.80353 1.54825 1.23079 1.85370 1.23275 1.00472 0.73248 0.74743 0.71760 1.93428 1.80980 1.85794 1.41922 1.93371 1.73020 1.65274 1.70527 1.30940 1.21206 1.17673 1.46955 0.87167 1.25132 0.94183 0.99437 0.92006 1.70007 1.12292 1.30996 1.34941 0.87512 0.84234 0.81391 0.82806 1.16323 1.14053 1.15369 1.23105 1.00467 0.97627 0.94677 1.23010 1.01288 0.94303 0.99097 1.22792 0.99529 0.97791 0.97007 1.22977 0.96328 0.98461 0.98910 0.93379 0.89162 0.91553 0.91514 0.89845 0.74784 0.89825 0.89176 0.89328 0.91338 0.89830 0.90219 0.91068 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 10.57 113.37 1.20 1.44 16 2 O -0.40 -11.04 10.16 -148.98 -1.51 -12.56 16 3 C 0.10 2.54 2.12 30.59 0.06 2.61 16 4 H 0.08 1.81 7.59 -2.39 -0.02 1.79 16 5 C 0.12 4.01 5.91 86.38 0.51 4.52 16 6 N -1.11 -43.00 5.86 -187.48 -1.10 -44.10 16 7 S 2.70 137.47 4.24 -56.49 -0.24 137.24 16 8 O -1.03 -56.24 16.02 -128.00 -2.05 -58.30 16 9 O -1.03 -56.78 16.30 -128.00 -2.09 -58.87 16 10 C -1.03 -58.60 10.26 67.73 0.69 -57.91 16 11 H 0.11 6.28 8.06 -2.91 -0.02 6.25 16 12 C 0.11 6.34 5.47 84.65 0.46 6.80 16 13 N -0.85 -49.51 13.96 21.45 0.30 -49.21 16 14 Si 0.82 41.78 26.54 68.60 1.82 43.60 16 15 H -0.24 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.22 -9.72 7.11 99.48 0.71 -9.01 16 17 H -0.23 -12.13 5.61 99.48 0.56 -11.57 16 18 C -0.14 -2.95 3.36 -10.27 -0.03 -2.98 16 19 C -0.14 -2.54 7.63 31.12 0.24 -2.30 16 20 C -0.13 -1.96 8.08 31.12 0.25 -1.70 16 21 C -0.13 -2.06 6.18 31.12 0.19 -1.87 16 22 H 0.05 0.81 8.09 -2.39 -0.02 0.79 16 23 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 0.97 4.95 -2.38 -0.01 0.96 16 25 H 0.07 2.47 7.75 -2.38 -0.02 2.45 16 26 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.42 13.92 8.65 -96.74 -0.84 13.08 16 28 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 1.51 7.96 -2.39 -0.02 1.49 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.26 6.33 -2.39 -0.02 1.25 16 Total: -1.00 -70.88 297.15 -1.19 -72.07 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.10 Total: 21.52 kcal Atomic # 6 Polarization: -54.98 SS G_CDS: 3.58 Total: -51.40 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -0.80 Total: -93.30 kcal Atomic # 8 Polarization: -124.07 SS G_CDS: -5.65 Total: -129.72 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.82 Total: 43.60 kcal Atomic # 16 Polarization: 137.47 SS G_CDS: -0.24 Total: 137.24 kcal Total: -70.88 -1.19 -72.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692151942.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.218 kcal (2) G-P(sol) polarization free energy of solvation -70.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds