Wall clock time and date at job start Mon Mar 30 2020 05:18:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42898 * 113.99979 * 2 1
4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1
5 5 C 1.53005 * 109.47314 * 149.99762 * 3 2 1
6 6 N 1.46504 * 109.46944 * 300.00219 * 5 3 2
7 7 S 1.65592 * 119.99978 * 164.99999 * 6 5 3
8 8 O 1.42104 * 106.40248 * 178.53480 * 7 6 5
9 9 O 1.42101 * 106.40361 * 311.45763 * 7 6 5
10 10 C 1.76208 * 107.21939 * 64.99574 * 7 6 5
11 11 H 1.07994 * 119.99746 * 0.02562 * 10 7 6
12 12 C 1.37877 * 119.99893 * 180.02562 * 10 7 6
13 13 N 1.31518 * 119.99693 * 180.02562 * 12 10 7
14 14 Si 1.86801 * 120.00023 * 359.97438 * 12 10 7
15 15 H 1.48507 * 109.46649 * 90.00246 * 14 12 10
16 16 H 1.48494 * 109.47126 * 209.99922 * 14 12 10
17 17 H 1.48491 * 109.47419 * 330.00457 * 14 12 10
18 18 C 1.52998 * 109.46963 * 269.99561 * 3 2 1
19 19 C 1.53784 * 113.61409 * 157.49722 * 18 3 2
20 20 C 1.53783 * 87.08257 * 220.02106 * 19 18 3
21 21 C 1.53781 * 87.08088 * 25.43031 * 20 19 18
22 22 H 1.09002 * 109.47382 * 300.00227 * 1 2 3
23 23 H 1.09001 * 109.46938 * 180.02562 * 1 2 3
24 24 H 1.09004 * 109.46926 * 60.00334 * 1 2 3
25 25 H 1.09004 * 109.46997 * 59.99364 * 5 3 2
26 26 H 1.08991 * 109.47298 * 179.97438 * 5 3 2
27 27 H 0.97004 * 119.99991 * 344.99310 * 6 5 3
28 28 H 0.96998 * 119.99278 * 180.02562 * 13 12 10
29 29 H 1.08999 * 112.85275 * 288.80229 * 18 3 2
30 30 H 1.08999 * 113.61476 * 334.56801 * 19 18 3
31 31 H 1.09000 * 113.61166 * 105.47188 * 19 18 3
32 32 H 1.09005 * 113.61404 * 270.88567 * 20 19 18
33 33 H 1.08997 * 113.69014 * 139.99096 * 20 19 18
34 34 H 1.08999 * 113.61857 * 220.02110 * 21 20 19
35 35 H 1.09000 * 113.61348 * 89.11458 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3449 1.9994 0.5138
5 6 3.3589 1.2633 0.7213
6 7 3.1602 0.8172 2.1026
7 16 4.4557 0.3213 3.0070
8 8 3.9454 -0.0098 4.2912
9 8 5.1819 -0.5950 2.1992
10 6 5.5008 1.7219 3.2328
11 1 5.2267 2.6748 2.8048
12 6 6.6685 1.6013 3.9561
13 7 7.4482 2.6468 4.1251
14 14 7.1421 -0.0467 4.6971
15 1 7.9598 -0.8114 3.7213
16 1 7.9298 0.1757 5.9361
17 1 5.9136 -0.8146 5.0226
18 6 2.2178 1.7713 -1.4425
19 6 2.3078 3.2994 -1.5894
20 6 1.4687 3.1470 -2.8691
21 6 0.9164 1.8484 -2.2582
22 1 -0.3634 0.5139 0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5138 -0.8901
25 1 4.0242 0.5693 0.2076
26 1 3.8024 2.2589 0.7209
27 1 2.2698 0.8123 2.4873
28 1 8.2699 2.5618 4.6336
29 1 3.0197 1.2346 -1.9494
30 1 1.7980 3.8452 -0.7955
31 1 3.3197 3.6616 -1.7713
32 1 2.0663 2.9876 -3.7667
33 1 0.7159 3.9253 -2.9945
34 1 0.8049 1.0392 -2.9799
35 1 0.0262 1.9974 -1.6471
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000692151942.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:01
Heat of formation + Delta-G solvation = -136.290461 kcal
Electronic energy + Delta-G solvation = -18706.855903 eV
Core-core repulsion = 15638.476039 eV
Total energy + Delta-G solvation = -3068.379864 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.62758 -37.89277 -37.65816 -36.47935 -35.85014 -35.17608 -30.74091 -28.55739
-27.30125 -26.44311 -25.63270 -22.57568 -21.08809 -20.37362 -19.42518 -18.61498
-17.76171 -17.51577 -17.03160 -16.49731 -16.04820 -15.92533 -15.49449 -15.04267
-14.95849 -14.62197 -14.24747 -13.79176 -13.48900 -13.40182 -13.11315 -12.89083
-12.82707 -12.69516 -12.56170 -12.35476 -12.20143 -11.84970 -11.59726 -11.33521
-11.22487 -11.19327 -11.06381 -10.34569 -10.09912 -8.96399 -7.51827 0.16456
1.05274 1.14801 1.22573 1.89974 2.42023 2.56289 2.84372 3.33066
3.59193 3.78359 3.84000 4.00040 4.10230 4.19676 4.30298 4.45727
4.54143 4.60494 4.67053 4.73242 4.85612 4.90486 4.96560 4.98594
5.11709 5.13950 5.17459 5.36720 5.39447 5.61707 6.01503 6.28722
6.36242 6.54193 8.21004
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.031785 B = 0.005857 C = 0.005231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 880.693583 B = 4779.190516 C = 5351.874205
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.401 6.401
3 C 0.100 3.900
4 H 0.084 0.916
5 C 0.118 3.882
6 N -1.105 6.105
7 S 2.698 3.302
8 O -1.031 7.031
9 O -1.032 7.032
10 C -1.035 5.035
11 H 0.110 0.890
12 C 0.109 3.891
13 N -0.852 5.852
14 Si 0.823 3.177
15 H -0.240 1.240
16 H -0.218 1.218
17 H -0.231 1.231
18 C -0.139 4.139
19 C -0.139 4.139
20 C -0.134 4.134
21 C -0.130 4.130
22 H 0.048 0.952
23 H 0.090 0.910
24 H 0.066 0.934
25 H 0.066 0.934
26 H 0.084 0.916
27 H 0.418 0.582
28 H 0.291 0.709
29 H 0.090 0.910
30 H 0.088 0.912
31 H 0.068 0.932
32 H 0.083 0.917
33 H 0.079 0.921
34 H 0.071 0.929
35 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.963 1.031 -11.973 18.422
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 O -0.320 6.320
3 C 0.040 3.960
4 H 0.102 0.898
5 C -0.008 4.008
6 N -0.865 5.865
7 S 2.798 3.202
8 O -1.021 7.021
9 O -1.022 7.022
10 C -1.168 5.168
11 H 0.128 0.872
12 C -0.108 4.108
13 N -0.482 5.482
14 Si 0.641 3.359
15 H -0.163 1.163
16 H -0.141 1.141
17 H -0.154 1.154
18 C -0.159 4.159
19 C -0.177 4.177
20 C -0.171 4.171
21 C -0.167 4.167
22 H 0.066 0.934
23 H 0.108 0.892
24 H 0.084 0.916
25 H 0.085 0.915
26 H 0.102 0.898
27 H 0.252 0.748
28 H 0.102 0.898
29 H 0.108 0.892
30 H 0.107 0.893
31 H 0.087 0.913
32 H 0.102 0.898
33 H 0.098 0.902
34 H 0.089 0.911
35 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -13.371 0.088 -11.663 17.743
hybrid contribution 0.319 0.418 0.580 0.783
sum -13.052 0.506 -11.083 17.130
Atomic orbital electron populations
1.23210 0.79935 1.03737 1.01417 1.87955 1.21168 1.27774 1.95125
1.22382 0.93142 0.85215 0.95227 0.89825 1.21524 0.98436 1.00475
0.80353 1.54825 1.23079 1.85370 1.23275 1.00472 0.73248 0.74743
0.71760 1.93428 1.80980 1.85794 1.41922 1.93371 1.73020 1.65274
1.70527 1.30940 1.21206 1.17673 1.46955 0.87167 1.25132 0.94183
0.99437 0.92006 1.70007 1.12292 1.30996 1.34941 0.87512 0.84234
0.81391 0.82806 1.16323 1.14053 1.15369 1.23105 1.00467 0.97627
0.94677 1.23010 1.01288 0.94303 0.99097 1.22792 0.99529 0.97791
0.97007 1.22977 0.96328 0.98461 0.98910 0.93379 0.89162 0.91553
0.91514 0.89845 0.74784 0.89825 0.89176 0.89328 0.91338 0.89830
0.90219 0.91068 0.89000
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 23.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.24 10.57 113.37 1.20 1.44 16
2 O -0.40 -11.04 10.16 -148.98 -1.51 -12.56 16
3 C 0.10 2.54 2.12 30.59 0.06 2.61 16
4 H 0.08 1.81 7.59 -2.39 -0.02 1.79 16
5 C 0.12 4.01 5.91 86.38 0.51 4.52 16
6 N -1.11 -43.00 5.86 -187.48 -1.10 -44.10 16
7 S 2.70 137.47 4.24 -56.49 -0.24 137.24 16
8 O -1.03 -56.24 16.02 -128.00 -2.05 -58.30 16
9 O -1.03 -56.78 16.30 -128.00 -2.09 -58.87 16
10 C -1.03 -58.60 10.26 67.73 0.69 -57.91 16
11 H 0.11 6.28 8.06 -2.91 -0.02 6.25 16
12 C 0.11 6.34 5.47 84.65 0.46 6.80 16
13 N -0.85 -49.51 13.96 21.45 0.30 -49.21 16
14 Si 0.82 41.78 26.54 68.60 1.82 43.60 16
15 H -0.24 -11.84 7.11 99.48 0.71 -11.13 16
16 H -0.22 -9.72 7.11 99.48 0.71 -9.01 16
17 H -0.23 -12.13 5.61 99.48 0.56 -11.57 16
18 C -0.14 -2.95 3.36 -10.27 -0.03 -2.98 16
19 C -0.14 -2.54 7.63 31.12 0.24 -2.30 16
20 C -0.13 -1.96 8.08 31.12 0.25 -1.70 16
21 C -0.13 -2.06 6.18 31.12 0.19 -1.87 16
22 H 0.05 0.81 8.09 -2.39 -0.02 0.79 16
23 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
24 H 0.07 0.97 4.95 -2.38 -0.01 0.96 16
25 H 0.07 2.47 7.75 -2.38 -0.02 2.45 16
26 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16
27 H 0.42 13.92 8.65 -96.74 -0.84 13.08 16
28 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16
29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16
30 H 0.09 1.51 7.96 -2.39 -0.02 1.49 16
31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
32 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16
33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
35 H 0.09 1.26 6.33 -2.39 -0.02 1.25 16
Total: -1.00 -70.88 297.15 -1.19 -72.07
By element:
Atomic # 1 Polarization: 21.41 SS G_CDS: 0.10 Total: 21.52 kcal
Atomic # 6 Polarization: -54.98 SS G_CDS: 3.58 Total: -51.40 kcal
Atomic # 7 Polarization: -92.50 SS G_CDS: -0.80 Total: -93.30 kcal
Atomic # 8 Polarization: -124.07 SS G_CDS: -5.65 Total: -129.72 kcal
Atomic # 14 Polarization: 41.78 SS G_CDS: 1.82 Total: 43.60 kcal
Atomic # 16 Polarization: 137.47 SS G_CDS: -0.24 Total: 137.24 kcal
Total: -70.88 -1.19 -72.07 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000692151942.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.218 kcal
(2) G-P(sol) polarization free energy of solvation -70.884 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.072 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.290 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds