Wall clock time and date at job start Mon Mar 30 2020 05:13:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42899 * 114.00076 * 2 1
4 4 H 1.08997 * 109.47300 * 20.93734 * 3 2 1
5 5 C 1.52993 * 109.47448 * 140.94352 * 3 2 1
6 6 N 1.46495 * 109.47098 * 300.00003 * 5 3 2
7 7 C 1.46506 * 120.00155 * 84.99792 * 6 5 3
8 8 S 1.65605 * 120.00327 * 264.99714 * 6 5 3
9 9 O 1.42096 * 106.40232 * 203.54159 * 8 6 5
10 10 O 1.42095 * 106.39730 * 336.46171 * 8 6 5
11 11 C 1.76204 * 107.21515 * 89.99989 * 8 6 5
12 12 H 1.08007 * 119.99836 * 0.02562 * 11 8 6
13 13 C 1.37870 * 119.99642 * 180.02562 * 11 8 6
14 14 N 1.31513 * 120.00549 * 359.97438 * 13 11 8
15 15 Si 1.86803 * 119.99820 * 179.97438 * 13 11 8
16 16 H 1.48502 * 109.47345 * 359.97438 * 15 13 11
17 17 H 1.48503 * 109.47205 * 119.99728 * 15 13 11
18 18 H 1.48502 * 109.47423 * 240.00019 * 15 13 11
19 19 C 1.53007 * 109.47210 * 260.94361 * 3 2 1
20 20 C 1.53000 * 117.49736 * 132.29706 * 19 3 2
21 21 C 1.53002 * 117.49769 * 63.63879 * 19 3 2
22 22 H 1.09001 * 109.46856 * 305.76291 * 1 2 3
23 23 H 1.09006 * 109.46972 * 185.76863 * 1 2 3
24 24 H 1.08999 * 109.47530 * 65.76924 * 1 2 3
25 25 H 1.09005 * 109.47388 * 60.00098 * 5 3 2
26 26 H 1.09001 * 109.47313 * 180.02562 * 5 3 2
27 27 H 1.09002 * 109.46838 * 90.00028 * 7 6 5
28 28 H 1.08996 * 109.47280 * 209.99941 * 7 6 5
29 29 H 1.09003 * 109.46775 * 330.00607 * 7 6 5
30 30 H 0.97003 * 120.00273 * 180.02562 * 14 13 11
31 31 H 1.09001 * 115.55052 * 277.97271 * 19 3 2
32 32 H 1.09000 * 117.50227 * 0.02562 * 20 19 3
33 33 H 1.09006 * 117.49135 * 145.02004 * 20 19 3
34 34 H 1.08997 * 117.50035 * 214.98284 * 21 19 3
35 35 H 1.09000 * 117.49842 * 359.97438 * 21 19 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.2812 2.0278 0.3672
5 6 3.2409 1.3158 0.9088
6 7 2.8437 0.9582 2.2728
7 6 2.7430 -0.4510 2.6608
8 16 2.5085 2.1467 3.3762
9 8 2.7045 1.5694 4.6598
10 8 3.1949 3.3097 2.9341
11 6 0.7882 2.5058 3.2495
12 1 0.1761 1.9719 2.5376
13 6 0.2235 3.4684 4.0591
14 7 0.9687 4.1182 4.9263
15 14 -1.6002 3.8497 3.9243
16 1 -2.2104 2.9875 2.8805
17 1 -2.2584 3.5886 5.2296
18 1 -1.7817 5.2766 3.5551
19 6 2.4251 1.6790 -1.4246
20 6 2.0175 3.0609 -1.9396
21 6 1.3174 1.8081 -2.4721
22 1 -0.3633 0.6006 0.8339
23 1 -0.3633 -1.0225 0.1033
24 1 -0.3634 0.4218 -0.9371
25 1 3.9700 0.5935 0.5415
26 1 3.6840 2.3117 0.9092
27 1 3.7040 -0.7912 3.0465
28 1 1.9817 -0.5617 3.4330
29 1 2.4684 -1.0484 1.7914
30 1 0.5713 4.7952 5.4961
31 1 3.3854 1.2822 -1.7539
32 1 1.4542 3.7040 -1.2635
33 1 2.7097 3.5730 -2.6081
34 1 1.5491 1.4966 -3.4906
35 1 0.2932 1.6264 -2.1465
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000692162978.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:18
Heat of formation + Delta-G solvation = -109.777554 kcal
Electronic energy + Delta-G solvation = -19412.752151 eV
Core-core repulsion = 16345.521973 eV
Total energy + Delta-G solvation = -3067.230178 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-38.82547 -35.87639 -35.26125 -35.02043 -33.93288 -33.06969 -29.65826 -26.37930
-26.11506 -24.95309 -22.56819 -22.22527 -20.40020 -18.64642 -17.26477 -16.52497
-16.10356 -15.75877 -15.28041 -14.89158 -14.63691 -14.34750 -14.00278 -13.32555
-13.07447 -12.89806 -12.12578 -11.98242 -11.90334 -11.68286 -11.37908 -11.26864
-11.23128 -11.20619 -10.85150 -10.62367 -10.28443 -10.26057 -10.17386 -10.08756
-9.96518 -9.31089 -9.27264 -8.85614 -8.04125 -6.70694 -5.32918 2.30508
3.02207 3.10925 3.16380 3.72764 4.02957 4.25025 4.54616 4.62796
4.90587 4.99496 5.15002 5.32815 5.51902 5.61298 5.66942 5.75414
5.79198 5.89869 5.90464 5.93497 5.96750 6.04699 6.20318 6.23318
6.30310 6.37001 6.47724 6.55768 6.86375 7.31193 7.53340 7.65164
7.95924 8.87509 10.22737
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.018139 B = 0.009130 C = 0.007692
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1543.235405 B = 3065.969280 C = 3639.429536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.372 6.372
3 C 0.095 3.905
4 H 0.076 0.924
5 C 0.129 3.871
6 N -1.012 6.012
7 C 0.104 3.896
8 S 2.712 3.288
9 O -1.004 7.004
10 O -1.005 7.005
11 C -1.018 5.018
12 H 0.100 0.900
13 C 0.134 3.866
14 N -0.845 5.845
15 Si 0.916 3.084
16 H -0.263 1.263
17 H -0.270 1.270
18 H -0.271 1.271
19 C -0.168 4.168
20 C -0.176 4.176
21 C -0.178 4.178
22 H 0.049 0.951
23 H 0.079 0.921
24 H 0.036 0.964
25 H 0.074 0.926
26 H 0.102 0.898
27 H 0.039 0.961
28 H 0.065 0.935
29 H 0.071 0.929
30 H 0.290 0.710
31 H 0.108 0.892
32 H 0.099 0.901
33 H 0.095 0.905
34 H 0.091 0.909
35 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.008 -5.562 -11.685 12.981
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.291 6.291
3 C 0.035 3.965
4 H 0.094 0.906
5 C 0.002 3.998
6 N -0.846 5.846
7 C -0.042 4.042
8 S 2.813 3.187
9 O -0.994 6.994
10 O -0.996 6.996
11 C -1.152 5.152
12 H 0.118 0.882
13 C -0.084 4.084
14 N -0.474 5.474
15 Si 0.740 3.260
16 H -0.187 1.187
17 H -0.195 1.195
18 H -0.196 1.196
19 C -0.187 4.187
20 C -0.213 4.213
21 C -0.215 4.215
22 H 0.068 0.932
23 H 0.097 0.903
24 H 0.054 0.946
25 H 0.092 0.908
26 H 0.120 0.880
27 H 0.057 0.943
28 H 0.084 0.916
29 H 0.090 0.910
30 H 0.101 0.899
31 H 0.126 0.874
32 H 0.118 0.882
33 H 0.114 0.886
34 H 0.110 0.890
35 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -0.186 -5.249 -10.948 12.143
hybrid contribution -1.833 0.330 -0.377 1.900
sum -2.019 -4.919 -11.325 12.511
Atomic orbital electron populations
1.22891 0.81852 1.02277 1.00050 1.87830 1.19022 1.27479 1.94763
1.22389 0.96785 0.85418 0.91913 0.90624 1.21288 0.94668 1.02429
0.81439 1.57756 1.84888 1.18964 1.22989 1.21279 1.00526 0.81987
1.00440 1.00583 0.76392 0.70685 0.71057 1.93355 1.88329 1.78329
1.39403 1.93340 1.76522 1.47690 1.82011 1.30656 1.20357 1.32214
1.31929 0.88198 1.24728 1.00673 0.91879 0.91105 1.69904 1.37823
1.21199 1.18506 0.86199 0.81820 0.78848 0.79099 1.18706 1.19549
1.19598 1.22746 0.99835 1.00670 0.95439 1.23042 1.03778 0.90714
1.03735 1.22908 0.97643 1.02580 0.98385 0.93245 0.90262 0.94566
0.90794 0.87981 0.94254 0.91604 0.91024 0.89943 0.87411 0.88221
0.88633 0.89029 0.88929
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.36 10.73 101.05 1.08 1.45 16
2 O -0.37 -5.93 8.48 -35.23 -0.30 -6.23 16
3 C 0.09 1.55 2.62 -26.73 -0.07 1.48 16
4 H 0.08 1.38 7.40 -51.93 -0.38 1.00 16
5 C 0.13 2.29 5.43 -4.05 -0.02 2.27 16
6 N -1.01 -21.11 3.15 -121.76 -0.38 -21.49 16
7 C 0.10 1.88 10.03 59.85 0.60 2.48 16
8 S 2.71 72.73 4.93 -107.50 -0.53 72.20 16
9 O -1.00 -29.79 17.09 -57.17 -0.98 -30.76 16
10 O -1.01 -29.11 16.57 -57.17 -0.95 -30.06 16
11 C -1.02 -27.66 9.75 30.60 0.30 -27.36 16
12 H 0.10 2.49 7.26 -52.48 -0.38 2.10 16
13 C 0.13 3.70 5.46 -17.82 -0.10 3.61 16
14 N -0.84 -24.75 13.19 55.43 0.73 -24.02 16
15 Si 0.92 20.31 29.54 -169.99 -5.02 15.29 16
16 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16
17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
19 C -0.17 -2.27 5.36 -90.61 -0.49 -2.75 16
20 C -0.18 -2.21 10.18 -26.69 -0.27 -2.49 16
21 C -0.18 -2.12 10.00 -26.69 -0.27 -2.39 16
22 H 0.05 0.78 7.42 -51.93 -0.39 0.39 16
23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
24 H 0.04 0.45 5.95 -51.93 -0.31 0.14 16
25 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16
26 H 0.10 1.89 6.91 -51.93 -0.36 1.53 16
27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.07 1.23 7.79 -51.93 -0.40 0.83 16
29 H 0.07 1.13 6.61 -51.93 -0.34 0.79 16
30 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16
31 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16
32 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16
33 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16
34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16
35 H 0.09 1.11 6.07 -51.93 -0.32 0.80 16
LS Contribution 304.42 15.07 4.59 4.59
Total: -1.00 -33.82 304.42 -7.04 -40.86
By element:
Atomic # 1 Polarization: 8.29 SS G_CDS: -4.97 Total: 3.32 kcal
Atomic # 6 Polarization: -24.47 SS G_CDS: 0.77 Total: -23.70 kcal
Atomic # 7 Polarization: -45.86 SS G_CDS: 0.35 Total: -45.51 kcal
Atomic # 8 Polarization: -64.82 SS G_CDS: -2.22 Total: -67.05 kcal
Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal
Atomic # 16 Polarization: 72.73 SS G_CDS: -0.53 Total: 72.20 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -33.82 -7.04 -40.86 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000692162978.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.915 kcal
(2) G-P(sol) polarization free energy of solvation -33.824 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.739 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds