Wall clock time and date at job start Mon Mar 30 2020 05:13:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42899 * 114.00076 * 2 1
4 4 H 1.08997 * 109.47300 * 20.93734 * 3 2 1
5 5 C 1.52993 * 109.47448 * 140.94352 * 3 2 1
6 6 N 1.46495 * 109.47098 * 300.00003 * 5 3 2
7 7 C 1.46506 * 120.00155 * 84.99792 * 6 5 3
8 8 S 1.65605 * 120.00327 * 264.99714 * 6 5 3
9 9 O 1.42096 * 106.40232 * 203.54159 * 8 6 5
10 10 O 1.42095 * 106.39730 * 336.46171 * 8 6 5
11 11 C 1.76204 * 107.21515 * 89.99989 * 8 6 5
12 12 H 1.08007 * 119.99836 * 0.02562 * 11 8 6
13 13 C 1.37870 * 119.99642 * 180.02562 * 11 8 6
14 14 N 1.31513 * 120.00549 * 359.97438 * 13 11 8
15 15 Si 1.86803 * 119.99820 * 179.97438 * 13 11 8
16 16 H 1.48502 * 109.47345 * 359.97438 * 15 13 11
17 17 H 1.48503 * 109.47205 * 119.99728 * 15 13 11
18 18 H 1.48502 * 109.47423 * 240.00019 * 15 13 11
19 19 C 1.53007 * 109.47210 * 260.94361 * 3 2 1
20 20 C 1.53000 * 117.49736 * 132.29706 * 19 3 2
21 21 C 1.53002 * 117.49769 * 63.63879 * 19 3 2
22 22 H 1.09001 * 109.46856 * 305.76291 * 1 2 3
23 23 H 1.09006 * 109.46972 * 185.76863 * 1 2 3
24 24 H 1.08999 * 109.47530 * 65.76924 * 1 2 3
25 25 H 1.09005 * 109.47388 * 60.00098 * 5 3 2
26 26 H 1.09001 * 109.47313 * 180.02562 * 5 3 2
27 27 H 1.09002 * 109.46838 * 90.00028 * 7 6 5
28 28 H 1.08996 * 109.47280 * 209.99941 * 7 6 5
29 29 H 1.09003 * 109.46775 * 330.00607 * 7 6 5
30 30 H 0.97003 * 120.00273 * 180.02562 * 14 13 11
31 31 H 1.09001 * 115.55052 * 277.97271 * 19 3 2
32 32 H 1.09000 * 117.50227 * 0.02562 * 20 19 3
33 33 H 1.09006 * 117.49135 * 145.02004 * 20 19 3
34 34 H 1.08997 * 117.50035 * 214.98284 * 21 19 3
35 35 H 1.09000 * 117.49842 * 359.97438 * 21 19 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.2812 2.0278 0.3672
5 6 3.2409 1.3158 0.9088
6 7 2.8437 0.9582 2.2728
7 6 2.7430 -0.4510 2.6608
8 16 2.5085 2.1467 3.3762
9 8 2.7045 1.5694 4.6598
10 8 3.1949 3.3097 2.9341
11 6 0.7882 2.5058 3.2495
12 1 0.1761 1.9719 2.5376
13 6 0.2235 3.4684 4.0591
14 7 0.9687 4.1182 4.9263
15 14 -1.6002 3.8497 3.9243
16 1 -2.2104 2.9875 2.8805
17 1 -2.2584 3.5886 5.2296
18 1 -1.7817 5.2766 3.5551
19 6 2.4251 1.6790 -1.4246
20 6 2.0175 3.0609 -1.9396
21 6 1.3174 1.8081 -2.4721
22 1 -0.3633 0.6006 0.8339
23 1 -0.3633 -1.0225 0.1033
24 1 -0.3634 0.4218 -0.9371
25 1 3.9700 0.5935 0.5415
26 1 3.6840 2.3117 0.9092
27 1 3.7040 -0.7912 3.0465
28 1 1.9817 -0.5617 3.4330
29 1 2.4684 -1.0484 1.7914
30 1 0.5713 4.7952 5.4961
31 1 3.3854 1.2822 -1.7539
32 1 1.4542 3.7040 -1.2635
33 1 2.7097 3.5730 -2.6081
34 1 1.5491 1.4966 -3.4906
35 1 0.2932 1.6264 -2.1465
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000692162978.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:17
Heat of formation + Delta-G solvation = -135.248806 kcal
Electronic energy + Delta-G solvation = -19413.856668 eV
Core-core repulsion = 16345.521973 eV
Total energy + Delta-G solvation = -3068.334694 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.01856 -37.46429 -36.99558 -36.53324 -36.14003 -35.16343 -31.00380 -28.30460
-27.58353 -26.31590 -23.97462 -23.20710 -21.55695 -20.66311 -19.12291 -18.33672
-17.55228 -17.07102 -17.05116 -16.60975 -16.09160 -15.72850 -15.57647 -15.00323
-14.40409 -14.30498 -13.98172 -13.69523 -13.28830 -13.17757 -13.10569 -13.05231
-12.51223 -12.44885 -12.41748 -12.32446 -12.29918 -12.03295 -11.92865 -11.29069
-11.27382 -11.06440 -10.95524 -10.52022 -9.62650 -8.75580 -7.49427 0.30460
1.29681 1.30688 1.47440 2.17400 2.55955 2.63813 2.81372 3.15133
3.70018 3.82225 3.95381 4.07999 4.13826 4.20222 4.29532 4.49653
4.52580 4.56887 4.61718 4.70589 4.79182 4.85200 4.90899 4.99369
5.05258 5.08545 5.19793 5.28370 5.29305 5.33874 5.89510 5.98349
6.31118 6.76471 8.19731
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.018139 B = 0.009130 C = 0.007692
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1543.235405 B = 3065.969280 C = 3639.429536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 O -0.378 6.378
3 C 0.099 3.901
4 H 0.048 0.952
5 C 0.120 3.880
6 N -1.007 6.007
7 C 0.099 3.901
8 S 2.712 3.288
9 O -1.043 7.043
10 O -1.038 7.038
11 C -1.032 5.032
12 H 0.115 0.885
13 C 0.072 3.928
14 N -0.894 5.894
15 Si 0.985 3.015
16 H -0.246 1.246
17 H -0.259 1.259
18 H -0.258 1.258
19 C -0.178 4.178
20 C -0.182 4.182
21 C -0.163 4.163
22 H 0.026 0.974
23 H 0.102 0.898
24 H 0.053 0.947
25 H 0.107 0.893
26 H 0.088 0.912
27 H 0.053 0.947
28 H 0.053 0.947
29 H 0.100 0.900
30 H 0.299 0.701
31 H 0.125 0.875
32 H 0.081 0.919
33 H 0.115 0.885
34 H 0.115 0.885
35 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.257 -6.625 -13.858 15.525
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.297 6.297
3 C 0.039 3.961
4 H 0.067 0.933
5 C -0.005 4.005
6 N -0.845 5.845
7 C -0.046 4.046
8 S 2.814 3.186
9 O -1.033 7.033
10 O -1.029 7.029
11 C -1.165 5.165
12 H 0.134 0.866
13 C -0.141 4.141
14 N -0.526 5.526
15 Si 0.803 3.197
16 H -0.169 1.169
17 H -0.184 1.184
18 H -0.183 1.183
19 C -0.197 4.197
20 C -0.219 4.219
21 C -0.199 4.199
22 H 0.045 0.955
23 H 0.120 0.880
24 H 0.072 0.928
25 H 0.125 0.875
26 H 0.106 0.894
27 H 0.072 0.928
28 H 0.072 0.928
29 H 0.118 0.882
30 H 0.109 0.891
31 H 0.143 0.857
32 H 0.099 0.901
33 H 0.133 0.867
34 H 0.134 0.866
35 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -1.416 -6.320 -13.126 14.637
hybrid contribution -1.386 0.594 0.259 1.530
sum -2.801 -5.726 -12.867 14.359
Atomic orbital electron populations
1.23030 0.80865 1.03503 1.00054 1.87790 1.20042 1.26941 1.94902
1.22204 0.95374 0.85151 0.93366 0.93346 1.21565 0.96329 1.02664
0.79967 1.57281 1.84826 1.18914 1.23436 1.21495 1.01151 0.80501
1.01432 1.00205 0.76500 0.70857 0.71036 1.93293 1.88783 1.79006
1.42229 1.93283 1.77212 1.49892 1.82481 1.30924 1.20766 1.32556
1.32280 0.86647 1.25976 1.06364 0.91407 0.90323 1.69996 1.40440
1.22323 1.19823 0.85180 0.74983 0.79495 0.80039 1.16891 1.18352
1.18270 1.22696 1.01363 1.01571 0.94096 1.23105 1.04313 0.90646
1.03884 1.23001 0.96921 1.01096 0.98922 0.95500 0.87951 0.92830
0.87519 0.89414 0.92788 0.92818 0.88200 0.89119 0.85692 0.90088
0.86697 0.86645 0.89183
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.56 10.73 113.37 1.22 1.78 16
2 O -0.38 -11.20 8.48 -148.98 -1.26 -12.46 16
3 C 0.10 3.13 2.62 30.59 0.08 3.21 16
4 H 0.05 1.78 7.40 -2.39 -0.02 1.76 16
5 C 0.12 4.19 5.43 86.38 0.47 4.66 16
6 N -1.01 -41.91 3.15 -539.13 -1.70 -43.61 16
7 C 0.10 3.49 10.03 127.77 1.28 4.77 16
8 S 2.71 149.36 4.93 -56.49 -0.28 149.08 16
9 O -1.04 -63.92 17.09 -128.00 -2.19 -66.10 16
10 O -1.04 -62.36 16.57 -128.00 -2.12 -64.48 16
11 C -1.03 -56.83 9.75 67.73 0.66 -56.17 16
12 H 0.12 5.78 7.26 -2.91 -0.02 5.75 16
13 C 0.07 4.01 5.46 84.65 0.46 4.47 16
14 N -0.89 -53.64 13.19 21.44 0.28 -53.36 16
15 Si 0.98 41.06 29.54 68.60 2.03 43.08 16
16 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16
17 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16
18 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16
19 C -0.18 -4.43 5.36 -10.79 -0.06 -4.49 16
20 C -0.18 -4.30 10.18 30.62 0.31 -3.99 16
21 C -0.16 -3.40 10.00 30.62 0.31 -3.09 16
22 H 0.03 0.81 7.42 -2.39 -0.02 0.79 16
23 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16
24 H 0.05 1.20 5.95 -2.39 -0.01 1.18 16
25 H 0.11 3.00 8.11 -2.38 -0.02 2.98 16
26 H 0.09 3.30 6.91 -2.39 -0.02 3.28 16
27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
28 H 0.05 2.00 7.79 -2.39 -0.02 1.98 16
29 H 0.10 2.93 6.61 -2.39 -0.02 2.91 16
30 H 0.30 16.03 8.31 -92.71 -0.77 15.26 16
31 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16
32 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16
33 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16
34 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16
35 H 0.09 1.92 6.07 -2.39 -0.01 1.91 16
Total: -1.00 -74.48 304.42 0.57 -73.91
By element:
Atomic # 1 Polarization: 21.73 SS G_CDS: 1.08 Total: 22.81 kcal
Atomic # 6 Polarization: -53.59 SS G_CDS: 4.73 Total: -48.86 kcal
Atomic # 7 Polarization: -95.56 SS G_CDS: -1.41 Total: -96.97 kcal
Atomic # 8 Polarization: -137.48 SS G_CDS: -5.57 Total: -143.05 kcal
Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal
Atomic # 16 Polarization: 149.36 SS G_CDS: -0.28 Total: 149.08 kcal
Total: -74.48 0.57 -73.91 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000692162978.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.337 kcal
(2) G-P(sol) polarization free energy of solvation -74.483 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.820 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.912 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.249 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds