Wall clock time and date at job start Mon Mar 30 2020 05:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00076 * 2 1 4 4 H 1.08997 * 109.47300 * 20.93734 * 3 2 1 5 5 C 1.52993 * 109.47448 * 140.94352 * 3 2 1 6 6 N 1.46495 * 109.47098 * 300.00003 * 5 3 2 7 7 C 1.46506 * 120.00155 * 84.99792 * 6 5 3 8 8 S 1.65605 * 120.00327 * 264.99714 * 6 5 3 9 9 O 1.42096 * 106.40232 * 203.54159 * 8 6 5 10 10 O 1.42095 * 106.39730 * 336.46171 * 8 6 5 11 11 C 1.76204 * 107.21515 * 89.99989 * 8 6 5 12 12 H 1.08007 * 119.99836 * 0.02562 * 11 8 6 13 13 C 1.37870 * 119.99642 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00549 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99820 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47345 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47205 * 119.99728 * 15 13 11 18 18 H 1.48502 * 109.47423 * 240.00019 * 15 13 11 19 19 C 1.53007 * 109.47210 * 260.94361 * 3 2 1 20 20 C 1.53000 * 117.49736 * 132.29706 * 19 3 2 21 21 C 1.53002 * 117.49769 * 63.63879 * 19 3 2 22 22 H 1.09001 * 109.46856 * 305.76291 * 1 2 3 23 23 H 1.09006 * 109.46972 * 185.76863 * 1 2 3 24 24 H 1.08999 * 109.47530 * 65.76924 * 1 2 3 25 25 H 1.09005 * 109.47388 * 60.00098 * 5 3 2 26 26 H 1.09001 * 109.47313 * 180.02562 * 5 3 2 27 27 H 1.09002 * 109.46838 * 90.00028 * 7 6 5 28 28 H 1.08996 * 109.47280 * 209.99941 * 7 6 5 29 29 H 1.09003 * 109.46775 * 330.00607 * 7 6 5 30 30 H 0.97003 * 120.00273 * 180.02562 * 14 13 11 31 31 H 1.09001 * 115.55052 * 277.97271 * 19 3 2 32 32 H 1.09000 * 117.50227 * 0.02562 * 20 19 3 33 33 H 1.09006 * 117.49135 * 145.02004 * 20 19 3 34 34 H 1.08997 * 117.50035 * 214.98284 * 21 19 3 35 35 H 1.09000 * 117.49842 * 359.97438 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2812 2.0278 0.3672 5 6 3.2409 1.3158 0.9088 6 7 2.8437 0.9582 2.2728 7 6 2.7430 -0.4510 2.6608 8 16 2.5085 2.1467 3.3762 9 8 2.7045 1.5694 4.6598 10 8 3.1949 3.3097 2.9341 11 6 0.7882 2.5058 3.2495 12 1 0.1761 1.9719 2.5376 13 6 0.2235 3.4684 4.0591 14 7 0.9687 4.1182 4.9263 15 14 -1.6002 3.8497 3.9243 16 1 -2.2104 2.9875 2.8805 17 1 -2.2584 3.5886 5.2296 18 1 -1.7817 5.2766 3.5551 19 6 2.4251 1.6790 -1.4246 20 6 2.0175 3.0609 -1.9396 21 6 1.3174 1.8081 -2.4721 22 1 -0.3633 0.6006 0.8339 23 1 -0.3633 -1.0225 0.1033 24 1 -0.3634 0.4218 -0.9371 25 1 3.9700 0.5935 0.5415 26 1 3.6840 2.3117 0.9092 27 1 3.7040 -0.7912 3.0465 28 1 1.9817 -0.5617 3.4330 29 1 2.4684 -1.0484 1.7914 30 1 0.5713 4.7952 5.4961 31 1 3.3854 1.2822 -1.7539 32 1 1.4542 3.7040 -1.2635 33 1 2.7097 3.5730 -2.6081 34 1 1.5491 1.4966 -3.4906 35 1 0.2932 1.6264 -2.1465 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692162978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:17 Heat of formation + Delta-G solvation = -135.248806 kcal Electronic energy + Delta-G solvation = -19413.856668 eV Core-core repulsion = 16345.521973 eV Total energy + Delta-G solvation = -3068.334694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.01856 -37.46429 -36.99558 -36.53324 -36.14003 -35.16343 -31.00380 -28.30460 -27.58353 -26.31590 -23.97462 -23.20710 -21.55695 -20.66311 -19.12291 -18.33672 -17.55228 -17.07102 -17.05116 -16.60975 -16.09160 -15.72850 -15.57647 -15.00323 -14.40409 -14.30498 -13.98172 -13.69523 -13.28830 -13.17757 -13.10569 -13.05231 -12.51223 -12.44885 -12.41748 -12.32446 -12.29918 -12.03295 -11.92865 -11.29069 -11.27382 -11.06440 -10.95524 -10.52022 -9.62650 -8.75580 -7.49427 0.30460 1.29681 1.30688 1.47440 2.17400 2.55955 2.63813 2.81372 3.15133 3.70018 3.82225 3.95381 4.07999 4.13826 4.20222 4.29532 4.49653 4.52580 4.56887 4.61718 4.70589 4.79182 4.85200 4.90899 4.99369 5.05258 5.08545 5.19793 5.28370 5.29305 5.33874 5.89510 5.98349 6.31118 6.76471 8.19731 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.018139 B = 0.009130 C = 0.007692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.235405 B = 3065.969280 C = 3639.429536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.378 6.378 3 C 0.099 3.901 4 H 0.048 0.952 5 C 0.120 3.880 6 N -1.007 6.007 7 C 0.099 3.901 8 S 2.712 3.288 9 O -1.043 7.043 10 O -1.038 7.038 11 C -1.032 5.032 12 H 0.115 0.885 13 C 0.072 3.928 14 N -0.894 5.894 15 Si 0.985 3.015 16 H -0.246 1.246 17 H -0.259 1.259 18 H -0.258 1.258 19 C -0.178 4.178 20 C -0.182 4.182 21 C -0.163 4.163 22 H 0.026 0.974 23 H 0.102 0.898 24 H 0.053 0.947 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.299 0.701 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -6.625 -13.858 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.297 6.297 3 C 0.039 3.961 4 H 0.067 0.933 5 C -0.005 4.005 6 N -0.845 5.845 7 C -0.046 4.046 8 S 2.814 3.186 9 O -1.033 7.033 10 O -1.029 7.029 11 C -1.165 5.165 12 H 0.134 0.866 13 C -0.141 4.141 14 N -0.526 5.526 15 Si 0.803 3.197 16 H -0.169 1.169 17 H -0.184 1.184 18 H -0.183 1.183 19 C -0.197 4.197 20 C -0.219 4.219 21 C -0.199 4.199 22 H 0.045 0.955 23 H 0.120 0.880 24 H 0.072 0.928 25 H 0.125 0.875 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.143 0.857 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.416 -6.320 -13.126 14.637 hybrid contribution -1.386 0.594 0.259 1.530 sum -2.801 -5.726 -12.867 14.359 Atomic orbital electron populations 1.23030 0.80865 1.03503 1.00054 1.87790 1.20042 1.26941 1.94902 1.22204 0.95374 0.85151 0.93366 0.93346 1.21565 0.96329 1.02664 0.79967 1.57281 1.84826 1.18914 1.23436 1.21495 1.01151 0.80501 1.01432 1.00205 0.76500 0.70857 0.71036 1.93293 1.88783 1.79006 1.42229 1.93283 1.77212 1.49892 1.82481 1.30924 1.20766 1.32556 1.32280 0.86647 1.25976 1.06364 0.91407 0.90323 1.69996 1.40440 1.22323 1.19823 0.85180 0.74983 0.79495 0.80039 1.16891 1.18352 1.18270 1.22696 1.01363 1.01571 0.94096 1.23105 1.04313 0.90646 1.03884 1.23001 0.96921 1.01096 0.98922 0.95500 0.87951 0.92830 0.87519 0.89414 0.92788 0.92818 0.88200 0.89119 0.85692 0.90088 0.86697 0.86645 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.73 113.37 1.22 1.78 16 2 O -0.38 -11.20 8.48 -148.98 -1.26 -12.46 16 3 C 0.10 3.13 2.62 30.59 0.08 3.21 16 4 H 0.05 1.78 7.40 -2.39 -0.02 1.76 16 5 C 0.12 4.19 5.43 86.38 0.47 4.66 16 6 N -1.01 -41.91 3.15 -539.13 -1.70 -43.61 16 7 C 0.10 3.49 10.03 127.77 1.28 4.77 16 8 S 2.71 149.36 4.93 -56.49 -0.28 149.08 16 9 O -1.04 -63.92 17.09 -128.00 -2.19 -66.10 16 10 O -1.04 -62.36 16.57 -128.00 -2.12 -64.48 16 11 C -1.03 -56.83 9.75 67.73 0.66 -56.17 16 12 H 0.12 5.78 7.26 -2.91 -0.02 5.75 16 13 C 0.07 4.01 5.46 84.65 0.46 4.47 16 14 N -0.89 -53.64 13.19 21.44 0.28 -53.36 16 15 Si 0.98 41.06 29.54 68.60 2.03 43.08 16 16 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 19 C -0.18 -4.43 5.36 -10.79 -0.06 -4.49 16 20 C -0.18 -4.30 10.18 30.62 0.31 -3.99 16 21 C -0.16 -3.40 10.00 30.62 0.31 -3.09 16 22 H 0.03 0.81 7.42 -2.39 -0.02 0.79 16 23 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.05 1.20 5.95 -2.39 -0.01 1.18 16 25 H 0.11 3.00 8.11 -2.38 -0.02 2.98 16 26 H 0.09 3.30 6.91 -2.39 -0.02 3.28 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 2.00 7.79 -2.39 -0.02 1.98 16 29 H 0.10 2.93 6.61 -2.39 -0.02 2.91 16 30 H 0.30 16.03 8.31 -92.71 -0.77 15.26 16 31 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 33 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 1.92 6.07 -2.39 -0.01 1.91 16 Total: -1.00 -74.48 304.42 0.57 -73.91 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.08 Total: 22.81 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 4.73 Total: -48.86 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -1.41 Total: -96.97 kcal Atomic # 8 Polarization: -137.48 SS G_CDS: -5.57 Total: -143.05 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: 149.36 SS G_CDS: -0.28 Total: 149.08 kcal Total: -74.48 0.57 -73.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692162978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.337 kcal (2) G-P(sol) polarization free energy of solvation -74.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds