Wall clock time and date at job start Mon Mar 30 2020 05:07:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 O 1.42899 * 109.47051 * 2 1
4 4 C 1.42896 * 114.00403 * 179.97438 * 3 2 1
5 5 H 1.09004 * 108.89709 * 332.76889 * 4 3 2
6 6 C 1.53623 * 108.93344 * 91.44777 * 4 3 2
7 7 S 1.83234 * 105.34580 * 118.24039 * 6 4 3
8 8 O 1.42094 * 109.61638 * 92.71923 * 7 6 4
9 9 O 1.42102 * 109.61250 * 226.67214 * 7 6 4
10 10 C 1.83842 * 95.32129 * 339.69550 * 7 6 4
11 11 C 1.52972 * 108.83010 * 214.14628 * 4 3 2
12 12 H 1.08992 * 109.65291 * 149.54699 * 11 4 3
13 13 N 1.46504 * 109.64929 * 29.10190 * 11 4 3
14 14 C 1.46502 * 120.00125 * 300.00145 * 13 11 4
15 15 C 1.36936 * 119.99947 * 120.00239 * 13 11 4
16 16 H 1.07995 * 119.99926 * 24.88046 * 15 13 11
17 17 C 1.38808 * 120.00352 * 204.88429 * 15 13 11
18 18 N 1.31621 * 119.99873 * 5.66017 * 17 15 13
19 19 Si 1.86790 * 120.00303 * 185.66400 * 17 15 13
20 20 H 1.48505 * 109.47085 * 89.99749 * 19 17 15
21 21 H 1.48501 * 109.47310 * 209.99724 * 19 17 15
22 22 H 1.48502 * 109.47346 * 329.99580 * 19 17 15
23 23 H 1.09006 * 109.47210 * 180.02562 * 1 2 3
24 24 H 1.08996 * 109.47609 * 300.00189 * 1 2 3
25 25 H 1.08992 * 109.47187 * 60.00631 * 1 2 3
26 26 H 1.09001 * 109.47318 * 239.99432 * 2 1 3
27 27 H 1.09006 * 109.47109 * 119.99213 * 2 1 3
28 28 H 1.09002 * 110.26969 * 237.20993 * 6 4 3
29 29 H 1.08995 * 110.26870 * 359.26962 * 6 4 3
30 30 H 1.09000 * 111.07617 * 277.94930 * 10 7 6
31 31 H 1.09001 * 111.07764 * 153.90349 * 10 7 6
32 32 H 1.09001 * 109.47007 * 95.56155 * 14 13 11
33 33 H 1.08999 * 109.46993 * 215.56338 * 14 13 11
34 34 H 1.09002 * 109.46980 * 335.56754 * 14 13 11
35 35 H 0.96994 * 120.00137 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4308 1.4602 0.0006
5 1 3.8550 0.5741 0.4728
6 6 3.9254 1.5360 -1.4519
7 16 4.7473 3.1670 -1.5998
8 8 6.1359 3.0274 -1.3325
9 8 4.3091 3.8161 -2.7855
10 6 3.9103 3.9125 -0.1426
11 6 3.8279 2.6939 0.8133
12 1 4.7996 2.5290 1.2787
13 7 2.8224 2.9466 1.8483
14 6 1.4314 3.2082 1.4699
15 6 3.1826 2.9383 3.1694
16 1 4.2035 3.1484 3.4520
17 6 2.2356 2.6599 4.1453
18 7 1.0198 2.2949 3.7975
19 14 2.6866 2.8032 5.9523
20 1 2.4052 4.1826 6.4248
21 1 1.8823 1.8359 6.7415
22 1 4.1308 2.5049 6.1273
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8899
25 1 -0.3633 0.5137 -0.8900
26 1 1.8934 -0.5139 -0.8899
27 1 1.8934 -0.5137 0.8901
28 1 4.6374 0.7349 -1.6506
29 1 3.0834 1.4735 -2.1412
30 1 2.9156 4.2735 -0.4042
31 1 4.5137 4.7102 0.2905
32 1 0.8605 2.2811 1.5209
33 1 1.0000 3.9387 2.1543
34 1 1.3989 3.5994 0.4531
35 1 0.3582 2.0999 4.4794
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000696631188.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:51
Heat of formation + Delta-G solvation = -77.274602 kcal
Electronic energy + Delta-G solvation = -19551.612371 eV
Core-core repulsion = 16485.791627 eV
Total energy + Delta-G solvation = -3065.820744 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-38.60576 -36.79588 -35.77108 -35.57787 -33.28853 -30.92890 -30.07845 -28.51173
-26.06048 -24.79346 -22.60124 -22.00584 -19.72577 -18.63579 -17.40033 -16.42062
-16.19132 -15.70887 -15.53592 -15.02566 -14.70738 -14.26089 -13.67850 -13.55149
-12.98095 -12.85380 -12.62522 -12.02119 -11.91033 -11.80604 -11.76685 -11.45343
-11.27620 -11.01830 -10.85599 -10.79024 -10.61195 -10.46281 -10.21158 -10.06044
-9.94992 -9.80477 -9.05370 -8.52516 -6.79770 -5.78691 -3.29383 0.36045
2.76732 3.32524 3.39643 3.40046 3.85927 4.00946 4.36056 4.40319
4.74664 5.06049 5.10915 5.18505 5.45439 5.46213 5.47124 5.58700
5.68422 5.78124 5.87914 5.97657 6.05502 6.23930 6.34749 6.46343
6.58916 6.98567 7.48265 7.71086 7.75644 8.03856 8.33257 9.17090
9.76242 10.27026 11.22704
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.021263 B = 0.008022 C = 0.006417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1316.532501 B = 3489.510352 C = 4362.557259
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.059 3.941
3 O -0.343 6.343
4 C 0.082 3.918
5 H 0.076 0.924
6 C -0.615 4.615
7 S 2.374 3.626
8 O -0.944 6.944
9 O -0.951 6.951
10 C -0.583 4.583
11 C 0.178 3.822
12 H 0.096 0.904
13 N -0.566 5.566
14 C 0.175 3.825
15 C -0.267 4.267
16 H 0.070 0.930
17 C 0.010 3.990
18 N -0.897 5.897
19 Si 0.906 3.094
20 H -0.287 1.287
21 H -0.290 1.290
22 H -0.279 1.279
23 H 0.059 0.941
24 H 0.075 0.925
25 H 0.055 0.945
26 H 0.033 0.967
27 H 0.048 0.952
28 H 0.129 0.871
29 H 0.140 0.860
30 H 0.138 0.862
31 H 0.132 0.868
32 H 0.052 0.948
33 H 0.032 0.968
34 H -0.001 1.001
35 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.873 -3.245 -8.338 9.141
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.018 4.018
3 O -0.261 6.261
4 C 0.019 3.981
5 H 0.094 0.906
6 C -0.745 4.745
7 S 2.559 3.441
8 O -0.942 6.942
9 O -0.948 6.948
10 C -0.718 4.718
11 C 0.065 3.935
12 H 0.114 0.886
13 N -0.285 5.285
14 C 0.032 3.968
15 C -0.396 4.396
16 H 0.088 0.912
17 C -0.189 4.189
18 N -0.541 5.541
19 Si 0.736 3.264
20 H -0.214 1.214
21 H -0.217 1.217
22 H -0.204 1.204
23 H 0.078 0.922
24 H 0.094 0.906
25 H 0.074 0.926
26 H 0.051 0.949
27 H 0.066 0.934
28 H 0.147 0.853
29 H 0.158 0.842
30 H 0.156 0.844
31 H 0.150 0.850
32 H 0.070 0.930
33 H 0.051 0.949
34 H 0.017 0.983
35 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 2.233 -2.776 -8.866 9.555
hybrid contribution -0.273 -0.681 1.444 1.620
sum 1.961 -3.457 -7.421 8.418
Atomic orbital electron populations
1.21718 0.94080 1.01334 1.03416 1.22400 0.95557 0.84867 0.98932
1.88235 1.18707 1.24970 1.94150 1.23083 0.83970 1.02198 0.88815
0.90629 1.30929 1.13951 1.22408 1.07239 1.09277 0.76747 0.79911
0.78156 1.93591 1.28630 1.85822 1.86111 1.93567 1.83492 1.72786
1.44993 1.30982 1.13813 1.09779 1.17190 1.20943 0.96260 0.86808
0.89532 0.88590 1.43705 1.04590 1.79609 1.00569 1.20881 0.83711
0.99544 0.92668 1.19276 0.96123 1.42558 0.81685 0.91223 1.25124
0.96503 0.99018 0.98275 1.70088 1.03323 1.48929 1.31710 0.86242
0.77776 0.77449 0.84934 1.21411 1.21669 1.20421 0.92198 0.90612
0.92613 0.94893 0.93369 0.85291 0.84165 0.84392 0.84976 0.93006
0.94909 0.98285 0.93714
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.16 10.22 37.16 0.38 -1.78 16
2 C 0.06 0.93 6.44 37.16 0.24 1.17 16
3 O -0.34 -6.16 5.68 -35.23 -0.20 -6.36 16
4 C 0.08 1.34 3.02 -26.42 -0.08 1.26 16
5 H 0.08 1.20 7.72 -51.93 -0.40 0.80 16
6 C -0.61 -7.93 7.08 37.48 0.27 -7.67 16
7 S 2.37 34.28 6.05 -107.50 -0.65 33.62 16
8 O -0.94 -15.97 18.16 -57.67 -1.05 -17.02 16
9 O -0.95 -16.25 18.16 -57.67 -1.05 -17.29 16
10 C -0.58 -9.16 6.89 38.27 0.26 -8.90 16
11 C 0.18 3.30 2.96 -66.83 -0.20 3.10 16
12 H 0.10 1.72 7.88 -51.93 -0.41 1.31 16
13 N -0.57 -13.15 2.75 -172.23 -0.47 -13.62 16
14 C 0.18 4.11 6.83 59.85 0.41 4.52 16
15 C -0.27 -6.88 9.59 -15.06 -0.14 -7.03 16
16 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16
17 C 0.01 0.27 5.24 -17.43 -0.09 0.18 16
18 N -0.90 -24.52 10.45 55.49 0.58 -23.94 16
19 Si 0.91 20.94 29.56 -169.99 -5.02 15.92 16
20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16
23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
24 H 0.07 1.30 7.55 -51.93 -0.39 0.91 16
25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
26 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16
27 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16
28 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16
29 H 0.14 1.68 7.92 -51.93 -0.41 1.27 16
30 H 0.14 2.19 6.38 -51.93 -0.33 1.86 16
31 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16
32 H 0.05 1.28 5.46 -51.93 -0.28 1.00 16
33 H 0.03 0.84 7.30 -51.93 -0.38 0.46 16
34 H 0.00 -0.03 6.00 -51.93 -0.31 -0.34 16
35 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16
LS Contribution 291.51 15.07 4.39 4.39
Total: -1.00 -32.12 291.51 -7.42 -39.55
By element:
Atomic # 1 Polarization: 4.87 SS G_CDS: -5.00 Total: -0.13 kcal
Atomic # 6 Polarization: -16.17 SS G_CDS: 1.04 Total: -15.13 kcal
Atomic # 7 Polarization: -37.67 SS G_CDS: 0.11 Total: -37.56 kcal
Atomic # 8 Polarization: -38.37 SS G_CDS: -2.29 Total: -40.67 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Atomic # 16 Polarization: 34.28 SS G_CDS: -0.65 Total: 33.62 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -32.12 -7.42 -39.55 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000696631188.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.727 kcal
(2) G-P(sol) polarization free energy of solvation -32.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.275 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds