Wall clock time and date at job start Mon Mar 30 2020 05:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47051 * 2 1 4 4 C 1.42896 * 114.00403 * 179.97438 * 3 2 1 5 5 H 1.09004 * 108.89709 * 332.76889 * 4 3 2 6 6 C 1.53623 * 108.93344 * 91.44777 * 4 3 2 7 7 S 1.83234 * 105.34580 * 118.24039 * 6 4 3 8 8 O 1.42094 * 109.61638 * 92.71923 * 7 6 4 9 9 O 1.42102 * 109.61250 * 226.67214 * 7 6 4 10 10 C 1.83842 * 95.32129 * 339.69550 * 7 6 4 11 11 C 1.52972 * 108.83010 * 214.14628 * 4 3 2 12 12 H 1.08992 * 109.65291 * 149.54699 * 11 4 3 13 13 N 1.46504 * 109.64929 * 29.10190 * 11 4 3 14 14 C 1.46502 * 120.00125 * 300.00145 * 13 11 4 15 15 C 1.36936 * 119.99947 * 120.00239 * 13 11 4 16 16 H 1.07995 * 119.99926 * 24.88046 * 15 13 11 17 17 C 1.38808 * 120.00352 * 204.88429 * 15 13 11 18 18 N 1.31621 * 119.99873 * 5.66017 * 17 15 13 19 19 Si 1.86790 * 120.00303 * 185.66400 * 17 15 13 20 20 H 1.48505 * 109.47085 * 89.99749 * 19 17 15 21 21 H 1.48501 * 109.47310 * 209.99724 * 19 17 15 22 22 H 1.48502 * 109.47346 * 329.99580 * 19 17 15 23 23 H 1.09006 * 109.47210 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47609 * 300.00189 * 1 2 3 25 25 H 1.08992 * 109.47187 * 60.00631 * 1 2 3 26 26 H 1.09001 * 109.47318 * 239.99432 * 2 1 3 27 27 H 1.09006 * 109.47109 * 119.99213 * 2 1 3 28 28 H 1.09002 * 110.26969 * 237.20993 * 6 4 3 29 29 H 1.08995 * 110.26870 * 359.26962 * 6 4 3 30 30 H 1.09000 * 111.07617 * 277.94930 * 10 7 6 31 31 H 1.09001 * 111.07764 * 153.90349 * 10 7 6 32 32 H 1.09001 * 109.47007 * 95.56155 * 14 13 11 33 33 H 1.08999 * 109.46993 * 215.56338 * 14 13 11 34 34 H 1.09002 * 109.46980 * 335.56754 * 14 13 11 35 35 H 0.96994 * 120.00137 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8550 0.5741 0.4728 6 6 3.9254 1.5360 -1.4519 7 16 4.7473 3.1670 -1.5998 8 8 6.1359 3.0274 -1.3325 9 8 4.3091 3.8161 -2.7855 10 6 3.9103 3.9125 -0.1426 11 6 3.8279 2.6939 0.8133 12 1 4.7996 2.5290 1.2787 13 7 2.8224 2.9466 1.8483 14 6 1.4314 3.2082 1.4699 15 6 3.1826 2.9383 3.1694 16 1 4.2035 3.1484 3.4520 17 6 2.2356 2.6599 4.1453 18 7 1.0198 2.2949 3.7975 19 14 2.6866 2.8032 5.9523 20 1 2.4052 4.1826 6.4248 21 1 1.8823 1.8359 6.7415 22 1 4.1308 2.5049 6.1273 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 4.6374 0.7349 -1.6506 29 1 3.0834 1.4735 -2.1412 30 1 2.9156 4.2735 -0.4042 31 1 4.5137 4.7102 0.2905 32 1 0.8605 2.2811 1.5209 33 1 1.0000 3.9387 2.1543 34 1 1.3989 3.5994 0.4531 35 1 0.3582 2.0999 4.4794 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696631188.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:51 Heat of formation + Delta-G solvation = -77.274602 kcal Electronic energy + Delta-G solvation = -19551.612371 eV Core-core repulsion = 16485.791627 eV Total energy + Delta-G solvation = -3065.820744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.60576 -36.79588 -35.77108 -35.57787 -33.28853 -30.92890 -30.07845 -28.51173 -26.06048 -24.79346 -22.60124 -22.00584 -19.72577 -18.63579 -17.40033 -16.42062 -16.19132 -15.70887 -15.53592 -15.02566 -14.70738 -14.26089 -13.67850 -13.55149 -12.98095 -12.85380 -12.62522 -12.02119 -11.91033 -11.80604 -11.76685 -11.45343 -11.27620 -11.01830 -10.85599 -10.79024 -10.61195 -10.46281 -10.21158 -10.06044 -9.94992 -9.80477 -9.05370 -8.52516 -6.79770 -5.78691 -3.29383 0.36045 2.76732 3.32524 3.39643 3.40046 3.85927 4.00946 4.36056 4.40319 4.74664 5.06049 5.10915 5.18505 5.45439 5.46213 5.47124 5.58700 5.68422 5.78124 5.87914 5.97657 6.05502 6.23930 6.34749 6.46343 6.58916 6.98567 7.48265 7.71086 7.75644 8.03856 8.33257 9.17090 9.76242 10.27026 11.22704 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.021263 B = 0.008022 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.532501 B = 3489.510352 C = 4362.557259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.343 6.343 4 C 0.082 3.918 5 H 0.076 0.924 6 C -0.615 4.615 7 S 2.374 3.626 8 O -0.944 6.944 9 O -0.951 6.951 10 C -0.583 4.583 11 C 0.178 3.822 12 H 0.096 0.904 13 N -0.566 5.566 14 C 0.175 3.825 15 C -0.267 4.267 16 H 0.070 0.930 17 C 0.010 3.990 18 N -0.897 5.897 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.052 0.948 33 H 0.032 0.968 34 H -0.001 1.001 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 -3.245 -8.338 9.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.261 6.261 4 C 0.019 3.981 5 H 0.094 0.906 6 C -0.745 4.745 7 S 2.559 3.441 8 O -0.942 6.942 9 O -0.948 6.948 10 C -0.718 4.718 11 C 0.065 3.935 12 H 0.114 0.886 13 N -0.285 5.285 14 C 0.032 3.968 15 C -0.396 4.396 16 H 0.088 0.912 17 C -0.189 4.189 18 N -0.541 5.541 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.147 0.853 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.017 0.983 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.233 -2.776 -8.866 9.555 hybrid contribution -0.273 -0.681 1.444 1.620 sum 1.961 -3.457 -7.421 8.418 Atomic orbital electron populations 1.21718 0.94080 1.01334 1.03416 1.22400 0.95557 0.84867 0.98932 1.88235 1.18707 1.24970 1.94150 1.23083 0.83970 1.02198 0.88815 0.90629 1.30929 1.13951 1.22408 1.07239 1.09277 0.76747 0.79911 0.78156 1.93591 1.28630 1.85822 1.86111 1.93567 1.83492 1.72786 1.44993 1.30982 1.13813 1.09779 1.17190 1.20943 0.96260 0.86808 0.89532 0.88590 1.43705 1.04590 1.79609 1.00569 1.20881 0.83711 0.99544 0.92668 1.19276 0.96123 1.42558 0.81685 0.91223 1.25124 0.96503 0.99018 0.98275 1.70088 1.03323 1.48929 1.31710 0.86242 0.77776 0.77449 0.84934 1.21411 1.21669 1.20421 0.92198 0.90612 0.92613 0.94893 0.93369 0.85291 0.84165 0.84392 0.84976 0.93006 0.94909 0.98285 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.22 37.16 0.38 -1.78 16 2 C 0.06 0.93 6.44 37.16 0.24 1.17 16 3 O -0.34 -6.16 5.68 -35.23 -0.20 -6.36 16 4 C 0.08 1.34 3.02 -26.42 -0.08 1.26 16 5 H 0.08 1.20 7.72 -51.93 -0.40 0.80 16 6 C -0.61 -7.93 7.08 37.48 0.27 -7.67 16 7 S 2.37 34.28 6.05 -107.50 -0.65 33.62 16 8 O -0.94 -15.97 18.16 -57.67 -1.05 -17.02 16 9 O -0.95 -16.25 18.16 -57.67 -1.05 -17.29 16 10 C -0.58 -9.16 6.89 38.27 0.26 -8.90 16 11 C 0.18 3.30 2.96 -66.83 -0.20 3.10 16 12 H 0.10 1.72 7.88 -51.93 -0.41 1.31 16 13 N -0.57 -13.15 2.75 -172.23 -0.47 -13.62 16 14 C 0.18 4.11 6.83 59.85 0.41 4.52 16 15 C -0.27 -6.88 9.59 -15.06 -0.14 -7.03 16 16 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.01 0.27 5.24 -17.43 -0.09 0.18 16 18 N -0.90 -24.52 10.45 55.49 0.58 -23.94 16 19 Si 0.91 20.94 29.56 -169.99 -5.02 15.92 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.30 7.55 -51.93 -0.39 0.91 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 28 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.14 1.68 7.92 -51.93 -0.41 1.27 16 30 H 0.14 2.19 6.38 -51.93 -0.33 1.86 16 31 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16 32 H 0.05 1.28 5.46 -51.93 -0.28 1.00 16 33 H 0.03 0.84 7.30 -51.93 -0.38 0.46 16 34 H 0.00 -0.03 6.00 -51.93 -0.31 -0.34 16 35 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 291.51 15.07 4.39 4.39 Total: -1.00 -32.12 291.51 -7.42 -39.55 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.00 Total: -0.13 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 1.04 Total: -15.13 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.11 Total: -37.56 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -2.29 Total: -40.67 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 34.28 SS G_CDS: -0.65 Total: 33.62 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.12 -7.42 -39.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696631188.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.727 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds