Wall clock time and date at job start Mon Mar 30 2020 05:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47441 * 2 1 4 4 C 1.42893 * 114.00210 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.04994 * 28.59716 * 4 3 2 6 6 C 1.55052 * 110.02737 * 267.19561 * 4 3 2 7 7 S 1.83285 * 102.56581 * 198.27475 * 6 4 3 8 8 O 1.42102 * 109.35545 * 269.81028 * 7 6 4 9 9 O 1.42102 * 109.35545 * 136.60982 * 7 6 4 10 10 C 1.82914 * 97.01815 * 23.21062 * 7 6 4 11 11 C 1.53871 * 110.02826 * 150.00205 * 4 3 2 12 12 H 1.08998 * 109.54293 * 286.25855 * 11 4 3 13 13 N 1.46506 * 109.64870 * 46.62191 * 11 4 3 14 14 C 1.46497 * 119.99814 * 60.72313 * 13 11 4 15 15 C 1.36938 * 119.99527 * 240.73282 * 13 11 4 16 16 H 1.07997 * 120.00320 * 340.65334 * 15 13 11 17 17 C 1.38808 * 119.99578 * 160.93598 * 15 13 11 18 18 N 1.31621 * 120.00110 * 346.28134 * 17 15 13 19 19 Si 1.86796 * 119.99969 * 166.27860 * 17 15 13 20 20 H 1.48508 * 109.47095 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47122 * 119.99733 * 19 17 15 22 22 H 1.48500 * 109.47369 * 239.99934 * 19 17 15 23 23 H 1.09004 * 109.46883 * 300.00403 * 1 2 3 24 24 H 1.09006 * 109.46773 * 59.99984 * 1 2 3 25 25 H 1.08997 * 109.47500 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47192 * 240.00240 * 2 1 3 27 27 H 1.08999 * 109.47030 * 120.00296 * 2 1 3 28 28 H 1.08994 * 110.79404 * 80.00260 * 6 4 3 29 29 H 1.08998 * 110.95049 * 316.61765 * 6 4 3 30 30 H 1.09002 * 110.32340 * 243.22125 * 10 7 6 31 31 H 1.09004 * 110.40514 * 121.07416 * 10 7 6 32 32 H 1.09000 * 109.47323 * 269.93234 * 14 13 11 33 33 H 1.08998 * 109.47029 * 29.94400 * 14 13 11 34 34 H 1.09005 * 109.46446 * 149.93387 * 14 13 11 35 35 H 0.97004 * 119.99986 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8746 0.5933 -0.4892 6 6 3.9540 1.5733 1.4558 7 16 5.6378 2.2585 1.2221 8 8 6.5659 1.1910 1.0853 9 8 5.8679 3.2804 2.1823 10 6 5.3441 3.0198 -0.4149 11 6 3.8577 2.7497 -0.7222 12 1 3.7221 2.6273 -1.7968 13 7 3.0448 3.8724 -0.2479 14 6 3.0745 4.2521 1.1667 15 6 2.2570 4.5667 -1.1268 16 1 2.4534 4.5119 -2.1874 17 6 1.2097 5.3454 -0.6542 18 7 0.8000 5.2127 0.5896 19 14 0.3816 6.5818 -1.7833 20 1 1.0232 6.5370 -3.1219 21 1 -1.0590 6.2455 -1.9140 22 1 0.5217 7.9453 -1.2120 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9977 0.5922 1.9287 29 1 3.3364 2.2554 2.0400 30 1 5.9775 2.5525 -1.1689 31 1 5.5334 4.0925 -0.3746 32 1 2.3026 3.7035 1.7065 33 1 4.0515 4.0128 1.5866 34 1 2.8916 5.3227 1.2594 35 1 0.0684 5.7572 0.9200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696631210.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:54 Heat of formation + Delta-G solvation = -71.801867 kcal Electronic energy + Delta-G solvation = -19650.924145 eV Core-core repulsion = 16585.340717 eV Total energy + Delta-G solvation = -3065.583428 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.55934 -36.81112 -36.02303 -35.70927 -33.07975 -30.85831 -29.83421 -29.00812 -26.28070 -24.55395 -22.54650 -22.13766 -19.80755 -18.54892 -17.26001 -16.84503 -16.22350 -15.67230 -15.39680 -15.02200 -14.87051 -14.12168 -13.82322 -13.33375 -12.98692 -12.88957 -12.35617 -12.14136 -12.10581 -11.83065 -11.69103 -11.56636 -11.34055 -11.08476 -10.90958 -10.86875 -10.70507 -10.46219 -10.24490 -10.02464 -9.89245 -9.72782 -9.10512 -8.53681 -6.90250 -5.75447 -3.18723 0.39020 2.84010 3.36857 3.43888 3.45622 3.86229 4.01605 4.34085 4.45793 4.82321 5.00669 5.09688 5.20227 5.22759 5.34030 5.46800 5.55076 5.61287 5.68671 5.74878 5.94524 6.09374 6.20229 6.24014 6.38369 6.45929 6.59554 7.35312 7.61975 7.72062 7.80519 8.32352 9.16044 9.77878 10.22917 11.30403 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.009019 C = 0.006904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.041541 B = 3103.810088 C = 4054.411478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.321 6.321 4 C 0.081 3.919 5 H 0.070 0.930 6 C -0.621 4.621 7 S 2.379 3.621 8 O -0.957 6.957 9 O -0.937 6.937 10 C -0.597 4.597 11 C 0.181 3.819 12 H 0.098 0.902 13 N -0.574 5.574 14 C 0.139 3.861 15 C -0.253 4.253 16 H 0.072 0.928 17 C 0.006 3.994 18 N -0.899 5.899 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.290 1.290 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.123 0.877 29 H 0.160 0.840 30 H 0.131 0.869 31 H 0.147 0.853 32 H 0.035 0.965 33 H 0.000 1.000 34 H 0.065 0.935 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.367 -9.154 -1.109 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.238 6.238 4 C 0.018 3.982 5 H 0.088 0.912 6 C -0.751 4.751 7 S 2.564 3.436 8 O -0.954 6.954 9 O -0.934 6.934 10 C -0.731 4.731 11 C 0.069 3.931 12 H 0.116 0.884 13 N -0.294 5.294 14 C -0.005 4.005 15 C -0.382 4.382 16 H 0.090 0.910 17 C -0.193 4.193 18 N -0.544 5.544 19 Si 0.735 3.265 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.217 1.217 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.142 0.858 29 H 0.178 0.822 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.053 0.947 33 H 0.018 0.982 34 H 0.084 0.916 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.893 -8.893 -0.418 10.159 hybrid contribution -1.134 0.335 -0.874 1.471 sum 3.759 -8.557 -1.292 9.435 Atomic orbital electron populations 1.21665 0.93880 1.01131 1.03737 1.22525 0.95876 0.85290 0.99028 1.88336 1.17723 1.23673 1.94096 1.23291 0.84784 0.99735 0.90419 0.91248 1.31393 1.23405 1.13092 1.07248 1.09109 0.78236 0.76584 0.79658 1.93553 1.59502 1.55328 1.87022 1.93591 1.84427 1.56961 1.58426 1.30961 1.07585 1.14259 1.20296 1.20655 0.86144 0.86666 0.99662 0.88432 1.43925 1.49123 1.30259 1.06053 1.21328 0.94241 1.01660 0.83230 1.19201 1.07813 1.21747 0.89469 0.90970 1.24940 0.96780 1.00961 0.96588 1.70110 1.28329 1.40915 1.15023 0.86190 0.79068 0.81239 0.79982 1.20391 1.21821 1.21656 0.91723 0.91673 0.91960 0.94021 0.94202 0.85831 0.82212 0.85068 0.83470 0.94671 0.98164 0.91593 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 37.16 0.38 -1.69 16 2 C 0.05 0.74 6.50 37.16 0.24 0.98 16 3 O -0.32 -6.17 9.67 -35.23 -0.34 -6.51 16 4 C 0.08 1.34 2.76 -25.19 -0.07 1.27 16 5 H 0.07 0.92 7.81 -51.93 -0.41 0.52 16 6 C -0.62 -9.74 6.18 38.24 0.24 -9.50 16 7 S 2.38 37.89 5.35 -107.50 -0.58 37.31 16 8 O -0.96 -16.56 18.15 -57.71 -1.05 -17.60 16 9 O -0.94 -17.95 16.29 -57.71 -0.94 -18.89 16 10 C -0.60 -9.02 6.39 37.77 0.24 -8.77 16 11 C 0.18 3.31 3.11 -66.86 -0.21 3.10 16 12 H 0.10 1.72 7.85 -51.93 -0.41 1.31 16 13 N -0.57 -13.33 2.41 -172.27 -0.41 -13.74 16 14 C 0.14 3.30 6.87 59.85 0.41 3.71 16 15 C -0.25 -6.58 9.64 -15.06 -0.15 -6.73 16 16 H 0.07 1.82 7.79 -52.49 -0.41 1.41 16 17 C 0.01 0.16 5.07 -17.43 -0.09 0.07 16 18 N -0.90 -25.41 10.55 55.49 0.59 -24.82 16 19 Si 0.91 21.34 29.57 -169.99 -5.03 16.32 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.54 8.10 -51.93 -0.42 0.12 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.16 2.82 5.09 -51.93 -0.26 2.56 16 30 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.15 2.32 8.06 -51.93 -0.42 1.90 16 32 H 0.04 0.89 6.65 -51.93 -0.35 0.55 16 33 H 0.00 0.01 3.44 -51.84 -0.18 -0.17 16 34 H 0.07 1.73 6.73 -51.93 -0.35 1.38 16 35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 288.77 15.07 4.35 4.35 Total: -1.00 -33.03 288.77 -7.28 -40.31 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.87 Total: 0.84 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 1.00 Total: -17.55 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.17 Total: -38.57 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -2.33 Total: -43.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 16 Polarization: 37.89 SS G_CDS: -0.58 Total: 37.31 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.03 -7.28 -40.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696631210.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.493 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds