Wall clock time and date at job start Mon Mar 30 2020 05:07:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42904 * 109.47441 * 2 1
4 4 C 1.42893 * 114.00210 * 179.97438 * 3 2 1
5 5 H 1.09001 * 110.04994 * 28.59716 * 4 3 2
6 6 C 1.55052 * 110.02737 * 267.19561 * 4 3 2
7 7 S 1.83285 * 102.56581 * 198.27475 * 6 4 3
8 8 O 1.42102 * 109.35545 * 269.81028 * 7 6 4
9 9 O 1.42102 * 109.35545 * 136.60982 * 7 6 4
10 10 C 1.82914 * 97.01815 * 23.21062 * 7 6 4
11 11 C 1.53871 * 110.02826 * 150.00205 * 4 3 2
12 12 H 1.08998 * 109.54293 * 286.25855 * 11 4 3
13 13 N 1.46506 * 109.64870 * 46.62191 * 11 4 3
14 14 C 1.46497 * 119.99814 * 60.72313 * 13 11 4
15 15 C 1.36938 * 119.99527 * 240.73282 * 13 11 4
16 16 H 1.07997 * 120.00320 * 340.65334 * 15 13 11
17 17 C 1.38808 * 119.99578 * 160.93598 * 15 13 11
18 18 N 1.31621 * 120.00110 * 346.28134 * 17 15 13
19 19 Si 1.86796 * 119.99969 * 166.27860 * 17 15 13
20 20 H 1.48508 * 109.47095 * 0.02562 * 19 17 15
21 21 H 1.48504 * 109.47122 * 119.99733 * 19 17 15
22 22 H 1.48500 * 109.47369 * 239.99934 * 19 17 15
23 23 H 1.09004 * 109.46883 * 300.00403 * 1 2 3
24 24 H 1.09006 * 109.46773 * 59.99984 * 1 2 3
25 25 H 1.08997 * 109.47500 * 179.97438 * 1 2 3
26 26 H 1.08999 * 109.47192 * 240.00240 * 2 1 3
27 27 H 1.08999 * 109.47030 * 120.00296 * 2 1 3
28 28 H 1.08994 * 110.79404 * 80.00260 * 6 4 3
29 29 H 1.08998 * 110.95049 * 316.61765 * 6 4 3
30 30 H 1.09002 * 110.32340 * 243.22125 * 10 7 6
31 31 H 1.09004 * 110.40514 * 121.07416 * 10 7 6
32 32 H 1.09000 * 109.47323 * 269.93234 * 14 13 11
33 33 H 1.08998 * 109.47029 * 29.94400 * 14 13 11
34 34 H 1.09005 * 109.46446 * 149.93387 * 14 13 11
35 35 H 0.97004 * 119.99986 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4309 1.4601 0.0006
5 1 3.8746 0.5933 -0.4892
6 6 3.9540 1.5733 1.4558
7 16 5.6378 2.2585 1.2221
8 8 6.5659 1.1910 1.0853
9 8 5.8679 3.2804 2.1823
10 6 5.3441 3.0198 -0.4149
11 6 3.8577 2.7497 -0.7222
12 1 3.7221 2.6273 -1.7968
13 7 3.0448 3.8724 -0.2479
14 6 3.0745 4.2521 1.1667
15 6 2.2570 4.5667 -1.1268
16 1 2.4534 4.5119 -2.1874
17 6 1.2097 5.3454 -0.6542
18 7 0.8000 5.2127 0.5896
19 14 0.3816 6.5818 -1.7833
20 1 1.0232 6.5370 -3.1219
21 1 -1.0590 6.2455 -1.9140
22 1 0.5217 7.9453 -1.2120
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5139 -0.8901
25 1 -0.3634 -1.0276 -0.0005
26 1 1.8934 -0.5138 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 3.9977 0.5922 1.9287
29 1 3.3364 2.2554 2.0400
30 1 5.9775 2.5525 -1.1689
31 1 5.5334 4.0925 -0.3746
32 1 2.3026 3.7035 1.7065
33 1 4.0515 4.0128 1.5866
34 1 2.8916 5.3227 1.2594
35 1 0.0684 5.7572 0.9200
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000696631210.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:54
Heat of formation + Delta-G solvation = -71.801867 kcal
Electronic energy + Delta-G solvation = -19650.924145 eV
Core-core repulsion = 16585.340717 eV
Total energy + Delta-G solvation = -3065.583428 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-38.55934 -36.81112 -36.02303 -35.70927 -33.07975 -30.85831 -29.83421 -29.00812
-26.28070 -24.55395 -22.54650 -22.13766 -19.80755 -18.54892 -17.26001 -16.84503
-16.22350 -15.67230 -15.39680 -15.02200 -14.87051 -14.12168 -13.82322 -13.33375
-12.98692 -12.88957 -12.35617 -12.14136 -12.10581 -11.83065 -11.69103 -11.56636
-11.34055 -11.08476 -10.90958 -10.86875 -10.70507 -10.46219 -10.24490 -10.02464
-9.89245 -9.72782 -9.10512 -8.53681 -6.90250 -5.75447 -3.18723 0.39020
2.84010 3.36857 3.43888 3.45622 3.86229 4.01605 4.34085 4.45793
4.82321 5.00669 5.09688 5.20227 5.22759 5.34030 5.46800 5.55076
5.61287 5.68671 5.74878 5.94524 6.09374 6.20229 6.24014 6.38369
6.45929 6.59554 7.35312 7.61975 7.72062 7.80519 8.32352 9.16044
9.77878 10.22917 11.30403
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.018825 B = 0.009019 C = 0.006904
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1487.041541 B = 3103.810088 C = 4054.411478
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.050 3.950
3 O -0.321 6.321
4 C 0.081 3.919
5 H 0.070 0.930
6 C -0.621 4.621
7 S 2.379 3.621
8 O -0.957 6.957
9 O -0.937 6.937
10 C -0.597 4.597
11 C 0.181 3.819
12 H 0.098 0.902
13 N -0.574 5.574
14 C 0.139 3.861
15 C -0.253 4.253
16 H 0.072 0.928
17 C 0.006 3.994
18 N -0.899 5.899
19 Si 0.905 3.095
20 H -0.279 1.279
21 H -0.291 1.291
22 H -0.290 1.290
23 H 0.064 0.936
24 H 0.064 0.936
25 H 0.062 0.938
26 H 0.042 0.958
27 H 0.040 0.960
28 H 0.123 0.877
29 H 0.160 0.840
30 H 0.131 0.869
31 H 0.147 0.853
32 H 0.035 0.965
33 H 0.000 1.000
34 H 0.065 0.935
35 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.367 -9.154 -1.109 10.203
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.027 4.027
3 O -0.238 6.238
4 C 0.018 3.982
5 H 0.088 0.912
6 C -0.751 4.751
7 S 2.564 3.436
8 O -0.954 6.954
9 O -0.934 6.934
10 C -0.731 4.731
11 C 0.069 3.931
12 H 0.116 0.884
13 N -0.294 5.294
14 C -0.005 4.005
15 C -0.382 4.382
16 H 0.090 0.910
17 C -0.193 4.193
18 N -0.544 5.544
19 Si 0.735 3.265
20 H -0.204 1.204
21 H -0.218 1.218
22 H -0.217 1.217
23 H 0.083 0.917
24 H 0.083 0.917
25 H 0.080 0.920
26 H 0.060 0.940
27 H 0.058 0.942
28 H 0.142 0.858
29 H 0.178 0.822
30 H 0.149 0.851
31 H 0.165 0.835
32 H 0.053 0.947
33 H 0.018 0.982
34 H 0.084 0.916
35 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 4.893 -8.893 -0.418 10.159
hybrid contribution -1.134 0.335 -0.874 1.471
sum 3.759 -8.557 -1.292 9.435
Atomic orbital electron populations
1.21665 0.93880 1.01131 1.03737 1.22525 0.95876 0.85290 0.99028
1.88336 1.17723 1.23673 1.94096 1.23291 0.84784 0.99735 0.90419
0.91248 1.31393 1.23405 1.13092 1.07248 1.09109 0.78236 0.76584
0.79658 1.93553 1.59502 1.55328 1.87022 1.93591 1.84427 1.56961
1.58426 1.30961 1.07585 1.14259 1.20296 1.20655 0.86144 0.86666
0.99662 0.88432 1.43925 1.49123 1.30259 1.06053 1.21328 0.94241
1.01660 0.83230 1.19201 1.07813 1.21747 0.89469 0.90970 1.24940
0.96780 1.00961 0.96588 1.70110 1.28329 1.40915 1.15023 0.86190
0.79068 0.81239 0.79982 1.20391 1.21821 1.21656 0.91723 0.91673
0.91960 0.94021 0.94202 0.85831 0.82212 0.85068 0.83470 0.94671
0.98164 0.91593 0.93774
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 38.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.07 10.28 37.16 0.38 -1.69 16
2 C 0.05 0.74 6.50 37.16 0.24 0.98 16
3 O -0.32 -6.17 9.67 -35.23 -0.34 -6.51 16
4 C 0.08 1.34 2.76 -25.19 -0.07 1.27 16
5 H 0.07 0.92 7.81 -51.93 -0.41 0.52 16
6 C -0.62 -9.74 6.18 38.24 0.24 -9.50 16
7 S 2.38 37.89 5.35 -107.50 -0.58 37.31 16
8 O -0.96 -16.56 18.15 -57.71 -1.05 -17.60 16
9 O -0.94 -17.95 16.29 -57.71 -0.94 -18.89 16
10 C -0.60 -9.02 6.39 37.77 0.24 -8.77 16
11 C 0.18 3.31 3.11 -66.86 -0.21 3.10 16
12 H 0.10 1.72 7.85 -51.93 -0.41 1.31 16
13 N -0.57 -13.33 2.41 -172.27 -0.41 -13.74 16
14 C 0.14 3.30 6.87 59.85 0.41 3.71 16
15 C -0.25 -6.58 9.64 -15.06 -0.15 -6.73 16
16 H 0.07 1.82 7.79 -52.49 -0.41 1.41 16
17 C 0.01 0.16 5.07 -17.43 -0.09 0.07 16
18 N -0.90 -25.41 10.55 55.49 0.59 -24.82 16
19 Si 0.91 21.34 29.57 -169.99 -5.03 16.32 16
20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16
23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
26 H 0.04 0.54 8.10 -51.93 -0.42 0.12 16
27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16
28 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16
29 H 0.16 2.82 5.09 -51.93 -0.26 2.56 16
30 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16
31 H 0.15 2.32 8.06 -51.93 -0.42 1.90 16
32 H 0.04 0.89 6.65 -51.93 -0.35 0.55 16
33 H 0.00 0.01 3.44 -51.84 -0.18 -0.17 16
34 H 0.07 1.73 6.73 -51.93 -0.35 1.38 16
35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16
LS Contribution 288.77 15.07 4.35 4.35
Total: -1.00 -33.03 288.77 -7.28 -40.31
By element:
Atomic # 1 Polarization: 5.71 SS G_CDS: -4.87 Total: 0.84 kcal
Atomic # 6 Polarization: -18.55 SS G_CDS: 1.00 Total: -17.55 kcal
Atomic # 7 Polarization: -38.74 SS G_CDS: 0.17 Total: -38.57 kcal
Atomic # 8 Polarization: -40.68 SS G_CDS: -2.33 Total: -43.01 kcal
Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal
Atomic # 16 Polarization: 37.89 SS G_CDS: -0.58 Total: 37.31 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -33.03 -7.28 -40.31 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000696631210.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.493 kcal
(2) G-P(sol) polarization free energy of solvation -33.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.802 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds