Wall clock time and date at job start Mon Mar 30 2020 05:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47441 * 2 1 4 4 C 1.42893 * 114.00210 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.04994 * 28.59716 * 4 3 2 6 6 C 1.55052 * 110.02737 * 267.19561 * 4 3 2 7 7 S 1.83285 * 102.56581 * 198.27475 * 6 4 3 8 8 O 1.42102 * 109.35545 * 269.81028 * 7 6 4 9 9 O 1.42102 * 109.35545 * 136.60982 * 7 6 4 10 10 C 1.82914 * 97.01815 * 23.21062 * 7 6 4 11 11 C 1.53871 * 110.02826 * 150.00205 * 4 3 2 12 12 H 1.08998 * 109.54293 * 286.25855 * 11 4 3 13 13 N 1.46506 * 109.64870 * 46.62191 * 11 4 3 14 14 C 1.46497 * 119.99814 * 60.72313 * 13 11 4 15 15 C 1.36938 * 119.99527 * 240.73282 * 13 11 4 16 16 H 1.07997 * 120.00320 * 340.65334 * 15 13 11 17 17 C 1.38808 * 119.99578 * 160.93598 * 15 13 11 18 18 N 1.31621 * 120.00110 * 346.28134 * 17 15 13 19 19 Si 1.86796 * 119.99969 * 166.27860 * 17 15 13 20 20 H 1.48508 * 109.47095 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47122 * 119.99733 * 19 17 15 22 22 H 1.48500 * 109.47369 * 239.99934 * 19 17 15 23 23 H 1.09004 * 109.46883 * 300.00403 * 1 2 3 24 24 H 1.09006 * 109.46773 * 59.99984 * 1 2 3 25 25 H 1.08997 * 109.47500 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47192 * 240.00240 * 2 1 3 27 27 H 1.08999 * 109.47030 * 120.00296 * 2 1 3 28 28 H 1.08994 * 110.79404 * 80.00260 * 6 4 3 29 29 H 1.08998 * 110.95049 * 316.61765 * 6 4 3 30 30 H 1.09002 * 110.32340 * 243.22125 * 10 7 6 31 31 H 1.09004 * 110.40514 * 121.07416 * 10 7 6 32 32 H 1.09000 * 109.47323 * 269.93234 * 14 13 11 33 33 H 1.08998 * 109.47029 * 29.94400 * 14 13 11 34 34 H 1.09005 * 109.46446 * 149.93387 * 14 13 11 35 35 H 0.97004 * 119.99986 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8746 0.5933 -0.4892 6 6 3.9540 1.5733 1.4558 7 16 5.6378 2.2585 1.2221 8 8 6.5659 1.1910 1.0853 9 8 5.8679 3.2804 2.1823 10 6 5.3441 3.0198 -0.4149 11 6 3.8577 2.7497 -0.7222 12 1 3.7221 2.6273 -1.7968 13 7 3.0448 3.8724 -0.2479 14 6 3.0745 4.2521 1.1667 15 6 2.2570 4.5667 -1.1268 16 1 2.4534 4.5119 -2.1874 17 6 1.2097 5.3454 -0.6542 18 7 0.8000 5.2127 0.5896 19 14 0.3816 6.5818 -1.7833 20 1 1.0232 6.5370 -3.1219 21 1 -1.0590 6.2455 -1.9140 22 1 0.5217 7.9453 -1.2120 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9977 0.5922 1.9287 29 1 3.3364 2.2554 2.0400 30 1 5.9775 2.5525 -1.1689 31 1 5.5334 4.0925 -0.3746 32 1 2.3026 3.7035 1.7065 33 1 4.0515 4.0128 1.5866 34 1 2.8916 5.3227 1.2594 35 1 0.0684 5.7572 0.9200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696631210.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:53 Heat of formation + Delta-G solvation = -96.848058 kcal Electronic energy + Delta-G solvation = -19652.010230 eV Core-core repulsion = 16585.340717 eV Total energy + Delta-G solvation = -3066.669513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.94640 -38.19823 -37.51972 -37.08925 -34.77507 -32.26201 -31.38217 -30.39139 -28.07989 -26.13745 -23.99842 -23.43977 -21.32718 -19.85101 -18.98179 -18.24092 -17.71386 -16.97463 -16.75364 -16.58171 -16.25341 -15.59630 -15.50483 -14.78533 -14.55946 -14.23184 -13.76997 -13.61817 -13.33423 -13.24311 -13.12017 -12.98899 -12.84438 -12.67533 -12.64455 -12.35874 -12.18247 -12.02527 -11.85054 -11.70849 -11.56198 -11.16384 -10.54637 -10.35448 -8.80038 -7.76399 -5.19722 -0.89604 1.48316 1.50686 1.57540 1.59411 2.52760 2.58688 2.79175 3.09199 3.37726 3.54214 3.59444 3.84777 3.90461 4.05072 4.24017 4.29731 4.37165 4.55306 4.58031 4.74344 4.77049 4.87063 4.99304 5.01704 5.10377 5.31846 5.38845 5.66354 5.80304 6.33872 6.52875 7.18445 7.88746 8.29652 9.28479 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.009019 C = 0.006904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.041541 B = 3103.810088 C = 4054.411478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 O -0.365 6.365 4 C 0.077 3.923 5 H 0.115 0.885 6 C -0.619 4.619 7 S 2.398 3.602 8 O -0.964 6.964 9 O -0.974 6.974 10 C -0.583 4.583 11 C 0.169 3.831 12 H 0.107 0.893 13 N -0.589 5.589 14 C 0.157 3.843 15 C -0.249 4.249 16 H 0.080 0.920 17 C -0.053 4.053 18 N -0.934 5.934 19 Si 0.962 3.038 20 H -0.264 1.264 21 H -0.299 1.299 22 H -0.297 1.297 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.156 0.844 29 H 0.136 0.864 30 H 0.176 0.824 31 H 0.142 0.858 32 H 0.010 0.990 33 H 0.027 0.973 34 H 0.029 0.971 35 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -11.044 -2.559 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 O -0.283 6.283 4 C 0.015 3.985 5 H 0.132 0.868 6 C -0.749 4.749 7 S 2.585 3.415 8 O -0.961 6.961 9 O -0.971 6.971 10 C -0.717 4.717 11 C 0.058 3.942 12 H 0.125 0.875 13 N -0.310 5.310 14 C 0.012 3.988 15 C -0.379 4.379 16 H 0.098 0.902 17 C -0.248 4.248 18 N -0.581 5.581 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.226 1.226 22 H -0.224 1.224 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.174 0.826 29 H 0.154 0.846 30 H 0.194 0.806 31 H 0.160 0.840 32 H 0.028 0.972 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.240 -10.815 -1.886 12.628 hybrid contribution -1.480 0.811 -0.466 1.751 sum 4.760 -10.004 -2.352 11.326 Atomic orbital electron populations 1.21696 0.94085 1.02784 1.01715 1.22791 0.95859 0.83831 1.01030 1.88301 1.19089 1.26518 1.94370 1.23379 0.84274 1.00130 0.90731 0.86772 1.31346 1.22105 1.14365 1.07085 1.08515 0.77879 0.75770 0.79354 1.93541 1.59981 1.55413 1.87169 1.93543 1.85085 1.58260 1.60221 1.30883 1.05867 1.14362 1.20615 1.21024 0.86607 0.86037 1.00494 0.87459 1.44010 1.49462 1.32303 1.05241 1.21002 0.94778 0.98933 0.84071 1.19569 1.07074 1.21080 0.90212 0.90203 1.25631 0.98155 1.03159 0.97806 1.70277 1.29069 1.42064 1.16665 0.85273 0.77684 0.78811 0.79037 1.18814 1.22632 1.22445 0.93955 0.93437 0.88458 0.91531 0.92400 0.82601 0.84582 0.80630 0.84019 0.97150 0.95523 0.95206 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 10.28 71.98 0.74 -3.18 16 2 C 0.04 1.11 6.50 71.98 0.47 1.58 16 3 O -0.36 -13.46 9.67 -148.98 -1.44 -14.90 16 4 C 0.08 2.33 2.76 31.59 0.09 2.41 16 5 H 0.11 2.44 7.81 -2.39 -0.02 2.42 16 6 C -0.62 -18.02 6.18 72.68 0.45 -17.57 16 7 S 2.40 70.50 5.35 -56.49 -0.30 70.20 16 8 O -0.96 -30.06 18.15 -127.49 -2.31 -32.37 16 9 O -0.97 -36.36 16.29 -127.49 -2.08 -38.43 16 10 C -0.58 -15.74 6.39 72.38 0.46 -15.28 16 11 C 0.17 5.74 3.11 45.68 0.14 5.88 16 12 H 0.11 3.43 7.85 -2.39 -0.02 3.42 16 13 N -0.59 -27.16 2.41 -698.93 -1.68 -28.85 16 14 C 0.16 7.61 6.87 127.77 0.88 8.49 16 15 C -0.25 -12.93 9.64 84.03 0.81 -12.12 16 16 H 0.08 3.93 7.79 -2.91 -0.02 3.91 16 17 C -0.05 -2.89 5.07 84.86 0.43 -2.46 16 18 N -0.93 -54.78 10.55 21.65 0.23 -54.55 16 19 Si 0.96 44.61 29.57 68.60 2.03 46.64 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 23 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16 25 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.16 3.45 8.14 -2.39 -0.02 3.43 16 29 H 0.14 4.77 5.09 -2.39 -0.01 4.76 16 30 H 0.18 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.14 4.14 8.06 -2.38 -0.02 4.12 16 32 H 0.01 0.55 6.65 -2.39 -0.02 0.53 16 33 H 0.03 1.13 3.44 -2.45 -0.01 1.12 16 34 H 0.03 1.62 6.73 -2.38 -0.02 1.60 16 35 H 0.24 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -72.82 288.77 -0.01 -72.83 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.08 Total: 11.68 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 4.47 Total: -32.24 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -1.46 Total: -83.40 kcal Atomic # 8 Polarization: -79.88 SS G_CDS: -5.83 Total: -85.71 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 70.50 SS G_CDS: -0.30 Total: 70.20 kcal Total: -72.82 -0.01 -72.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696631210.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.017 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds