Wall clock time and date at job start Mon Mar 30 2020 05:07:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42904 * 109.47441 * 2 1
4 4 C 1.42893 * 114.00210 * 179.97438 * 3 2 1
5 5 H 1.09001 * 110.04994 * 28.59716 * 4 3 2
6 6 C 1.55052 * 110.02737 * 267.19561 * 4 3 2
7 7 S 1.83285 * 102.56581 * 198.27475 * 6 4 3
8 8 O 1.42102 * 109.35545 * 269.81028 * 7 6 4
9 9 O 1.42102 * 109.35545 * 136.60982 * 7 6 4
10 10 C 1.82914 * 97.01815 * 23.21062 * 7 6 4
11 11 C 1.53871 * 110.02826 * 150.00205 * 4 3 2
12 12 H 1.08998 * 109.54293 * 286.25855 * 11 4 3
13 13 N 1.46506 * 109.64870 * 46.62191 * 11 4 3
14 14 C 1.46497 * 119.99814 * 60.72313 * 13 11 4
15 15 C 1.36938 * 119.99527 * 240.73282 * 13 11 4
16 16 H 1.07997 * 120.00320 * 340.65334 * 15 13 11
17 17 C 1.38808 * 119.99578 * 160.93598 * 15 13 11
18 18 N 1.31621 * 120.00110 * 346.28134 * 17 15 13
19 19 Si 1.86796 * 119.99969 * 166.27860 * 17 15 13
20 20 H 1.48508 * 109.47095 * 0.02562 * 19 17 15
21 21 H 1.48504 * 109.47122 * 119.99733 * 19 17 15
22 22 H 1.48500 * 109.47369 * 239.99934 * 19 17 15
23 23 H 1.09004 * 109.46883 * 300.00403 * 1 2 3
24 24 H 1.09006 * 109.46773 * 59.99984 * 1 2 3
25 25 H 1.08997 * 109.47500 * 179.97438 * 1 2 3
26 26 H 1.08999 * 109.47192 * 240.00240 * 2 1 3
27 27 H 1.08999 * 109.47030 * 120.00296 * 2 1 3
28 28 H 1.08994 * 110.79404 * 80.00260 * 6 4 3
29 29 H 1.08998 * 110.95049 * 316.61765 * 6 4 3
30 30 H 1.09002 * 110.32340 * 243.22125 * 10 7 6
31 31 H 1.09004 * 110.40514 * 121.07416 * 10 7 6
32 32 H 1.09000 * 109.47323 * 269.93234 * 14 13 11
33 33 H 1.08998 * 109.47029 * 29.94400 * 14 13 11
34 34 H 1.09005 * 109.46446 * 149.93387 * 14 13 11
35 35 H 0.97004 * 119.99986 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4309 1.4601 0.0006
5 1 3.8746 0.5933 -0.4892
6 6 3.9540 1.5733 1.4558
7 16 5.6378 2.2585 1.2221
8 8 6.5659 1.1910 1.0853
9 8 5.8679 3.2804 2.1823
10 6 5.3441 3.0198 -0.4149
11 6 3.8577 2.7497 -0.7222
12 1 3.7221 2.6273 -1.7968
13 7 3.0448 3.8724 -0.2479
14 6 3.0745 4.2521 1.1667
15 6 2.2570 4.5667 -1.1268
16 1 2.4534 4.5119 -2.1874
17 6 1.2097 5.3454 -0.6542
18 7 0.8000 5.2127 0.5896
19 14 0.3816 6.5818 -1.7833
20 1 1.0232 6.5370 -3.1219
21 1 -1.0590 6.2455 -1.9140
22 1 0.5217 7.9453 -1.2120
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5139 -0.8901
25 1 -0.3634 -1.0276 -0.0005
26 1 1.8934 -0.5138 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 3.9977 0.5922 1.9287
29 1 3.3364 2.2554 2.0400
30 1 5.9775 2.5525 -1.1689
31 1 5.5334 4.0925 -0.3746
32 1 2.3026 3.7035 1.7065
33 1 4.0515 4.0128 1.5866
34 1 2.8916 5.3227 1.2594
35 1 0.0684 5.7572 0.9200
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000696631210.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:53
Heat of formation + Delta-G solvation = -96.848058 kcal
Electronic energy + Delta-G solvation = -19652.010230 eV
Core-core repulsion = 16585.340717 eV
Total energy + Delta-G solvation = -3066.669513 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-39.94640 -38.19823 -37.51972 -37.08925 -34.77507 -32.26201 -31.38217 -30.39139
-28.07989 -26.13745 -23.99842 -23.43977 -21.32718 -19.85101 -18.98179 -18.24092
-17.71386 -16.97463 -16.75364 -16.58171 -16.25341 -15.59630 -15.50483 -14.78533
-14.55946 -14.23184 -13.76997 -13.61817 -13.33423 -13.24311 -13.12017 -12.98899
-12.84438 -12.67533 -12.64455 -12.35874 -12.18247 -12.02527 -11.85054 -11.70849
-11.56198 -11.16384 -10.54637 -10.35448 -8.80038 -7.76399 -5.19722 -0.89604
1.48316 1.50686 1.57540 1.59411 2.52760 2.58688 2.79175 3.09199
3.37726 3.54214 3.59444 3.84777 3.90461 4.05072 4.24017 4.29731
4.37165 4.55306 4.58031 4.74344 4.77049 4.87063 4.99304 5.01704
5.10377 5.31846 5.38845 5.66354 5.80304 6.33872 6.52875 7.18445
7.88746 8.29652 9.28479
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.018825 B = 0.009019 C = 0.006904
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1487.041541 B = 3103.810088 C = 4054.411478
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.041 3.959
3 O -0.365 6.365
4 C 0.077 3.923
5 H 0.115 0.885
6 C -0.619 4.619
7 S 2.398 3.602
8 O -0.964 6.964
9 O -0.974 6.974
10 C -0.583 4.583
11 C 0.169 3.831
12 H 0.107 0.893
13 N -0.589 5.589
14 C 0.157 3.843
15 C -0.249 4.249
16 H 0.080 0.920
17 C -0.053 4.053
18 N -0.934 5.934
19 Si 0.962 3.038
20 H -0.264 1.264
21 H -0.299 1.299
22 H -0.297 1.297
23 H 0.041 0.959
24 H 0.046 0.954
25 H 0.097 0.903
26 H 0.067 0.933
27 H 0.058 0.942
28 H 0.156 0.844
29 H 0.136 0.864
30 H 0.176 0.824
31 H 0.142 0.858
32 H 0.010 0.990
33 H 0.027 0.973
34 H 0.029 0.971
35 H 0.243 0.757
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.669 -11.044 -2.559 12.675
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.035 4.035
3 O -0.283 6.283
4 C 0.015 3.985
5 H 0.132 0.868
6 C -0.749 4.749
7 S 2.585 3.415
8 O -0.961 6.961
9 O -0.971 6.971
10 C -0.717 4.717
11 C 0.058 3.942
12 H 0.125 0.875
13 N -0.310 5.310
14 C 0.012 3.988
15 C -0.379 4.379
16 H 0.098 0.902
17 C -0.248 4.248
18 N -0.581 5.581
19 Si 0.792 3.208
20 H -0.188 1.188
21 H -0.226 1.226
22 H -0.224 1.224
23 H 0.060 0.940
24 H 0.066 0.934
25 H 0.115 0.885
26 H 0.085 0.915
27 H 0.076 0.924
28 H 0.174 0.826
29 H 0.154 0.846
30 H 0.194 0.806
31 H 0.160 0.840
32 H 0.028 0.972
33 H 0.045 0.955
34 H 0.048 0.952
35 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges 6.240 -10.815 -1.886 12.628
hybrid contribution -1.480 0.811 -0.466 1.751
sum 4.760 -10.004 -2.352 11.326
Atomic orbital electron populations
1.21696 0.94085 1.02784 1.01715 1.22791 0.95859 0.83831 1.01030
1.88301 1.19089 1.26518 1.94370 1.23379 0.84274 1.00130 0.90731
0.86772 1.31346 1.22105 1.14365 1.07085 1.08515 0.77879 0.75770
0.79354 1.93541 1.59981 1.55413 1.87169 1.93543 1.85085 1.58260
1.60221 1.30883 1.05867 1.14362 1.20615 1.21024 0.86607 0.86037
1.00494 0.87459 1.44010 1.49462 1.32303 1.05241 1.21002 0.94778
0.98933 0.84071 1.19569 1.07074 1.21080 0.90212 0.90203 1.25631
0.98155 1.03159 0.97806 1.70277 1.29069 1.42064 1.16665 0.85273
0.77684 0.78811 0.79037 1.18814 1.22632 1.22445 0.93955 0.93437
0.88458 0.91531 0.92400 0.82601 0.84582 0.80630 0.84019 0.97150
0.95523 0.95206 0.94717
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 28.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.93 10.28 71.98 0.74 -3.18 16
2 C 0.04 1.11 6.50 71.98 0.47 1.58 16
3 O -0.36 -13.46 9.67 -148.98 -1.44 -14.90 16
4 C 0.08 2.33 2.76 31.59 0.09 2.41 16
5 H 0.11 2.44 7.81 -2.39 -0.02 2.42 16
6 C -0.62 -18.02 6.18 72.68 0.45 -17.57 16
7 S 2.40 70.50 5.35 -56.49 -0.30 70.20 16
8 O -0.96 -30.06 18.15 -127.49 -2.31 -32.37 16
9 O -0.97 -36.36 16.29 -127.49 -2.08 -38.43 16
10 C -0.58 -15.74 6.39 72.38 0.46 -15.28 16
11 C 0.17 5.74 3.11 45.68 0.14 5.88 16
12 H 0.11 3.43 7.85 -2.39 -0.02 3.42 16
13 N -0.59 -27.16 2.41 -698.93 -1.68 -28.85 16
14 C 0.16 7.61 6.87 127.77 0.88 8.49 16
15 C -0.25 -12.93 9.64 84.03 0.81 -12.12 16
16 H 0.08 3.93 7.79 -2.91 -0.02 3.91 16
17 C -0.05 -2.89 5.07 84.86 0.43 -2.46 16
18 N -0.93 -54.78 10.55 21.65 0.23 -54.55 16
19 Si 0.96 44.61 29.57 68.60 2.03 46.64 16
20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16
21 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16
22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16
23 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16
24 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16
25 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16
26 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16
27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
28 H 0.16 3.45 8.14 -2.39 -0.02 3.43 16
29 H 0.14 4.77 5.09 -2.39 -0.01 4.76 16
30 H 0.18 3.18 8.14 -2.39 -0.02 3.16 16
31 H 0.14 4.14 8.06 -2.38 -0.02 4.12 16
32 H 0.01 0.55 6.65 -2.39 -0.02 0.53 16
33 H 0.03 1.13 3.44 -2.45 -0.01 1.12 16
34 H 0.03 1.62 6.73 -2.38 -0.02 1.60 16
35 H 0.24 14.04 8.31 -92.70 -0.77 13.27 16
Total: -1.00 -72.82 288.77 -0.01 -72.83
By element:
Atomic # 1 Polarization: 10.60 SS G_CDS: 1.08 Total: 11.68 kcal
Atomic # 6 Polarization: -36.71 SS G_CDS: 4.47 Total: -32.24 kcal
Atomic # 7 Polarization: -81.94 SS G_CDS: -1.46 Total: -83.40 kcal
Atomic # 8 Polarization: -79.88 SS G_CDS: -5.83 Total: -85.71 kcal
Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal
Atomic # 16 Polarization: 70.50 SS G_CDS: -0.30 Total: 70.20 kcal
Total: -72.82 -0.01 -72.83 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000696631210.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.017 kcal
(2) G-P(sol) polarization free energy of solvation -72.821 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.838 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds