Wall clock time and date at job start Mon Mar 30 2020 05:13:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42899 * 113.99807 * 2 1
4 4 H 1.08995 * 108.89586 * 330.69975 * 3 2 1
5 5 C 1.54214 * 108.92756 * 89.37245 * 3 2 1
6 6 S 1.83825 * 102.86215 * 145.65104 * 5 3 2
7 7 O 1.42094 * 109.81070 * 77.68519 * 6 5 3
8 8 O 1.42100 * 109.81001 * 212.00112 * 6 5 3
9 9 C 1.83823 * 94.23593 * 324.85804 * 6 5 3
10 10 C 1.52380 * 108.81829 * 212.09429 * 3 2 1
11 11 H 1.08996 * 108.92971 * 118.58996 * 10 3 2
12 12 N 1.46904 * 108.92714 * 0.07354 * 10 3 2
13 13 C 1.46897 * 111.00185 * 166.06765 * 12 10 3
14 14 C 1.46897 * 110.99841 * 290.02058 * 12 10 3
15 15 C 1.50705 * 109.46830 * 163.41700 * 14 12 10
16 16 H 1.07999 * 119.99958 * 0.02562 * 15 14 12
17 17 C 1.37881 * 119.99865 * 179.97438 * 15 14 12
18 18 N 1.31514 * 119.99861 * 180.02562 * 17 15 14
19 19 Si 1.86803 * 119.99892 * 0.02562 * 17 15 14
20 20 H 1.48495 * 109.47437 * 89.99441 * 19 17 15
21 21 H 1.48506 * 109.46872 * 209.99435 * 19 17 15
22 22 H 1.48495 * 109.46977 * 329.99009 * 19 17 15
23 23 H 1.08993 * 109.47175 * 180.02562 * 1 2 3
24 24 H 1.09001 * 109.46878 * 299.99691 * 1 2 3
25 25 H 1.09000 * 109.47339 * 59.99631 * 1 2 3
26 26 H 1.08997 * 110.73540 * 263.99575 * 5 3 2
27 27 H 1.08998 * 110.73115 * 27.30585 * 5 3 2
28 28 H 1.09003 * 110.73573 * 153.48115 * 9 6 5
29 29 H 1.08992 * 110.74074 * 276.61669 * 9 6 5
30 30 H 1.08995 * 109.47140 * 64.25763 * 13 12 10
31 31 H 1.09001 * 109.46994 * 184.25993 * 13 12 10
32 32 H 1.09008 * 109.47038 * 304.25861 * 13 12 10
33 33 H 1.09000 * 109.47469 * 283.41956 * 14 12 10
34 34 H 1.09003 * 109.47354 * 43.42381 * 14 12 10
35 35 H 0.97004 * 120.00063 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3322 1.9937 -0.5047
5 6 2.1991 1.7689 1.4587
6 16 3.7469 2.7572 1.3769
7 8 3.4723 4.0375 0.8251
8 8 4.4561 2.6437 2.6030
9 6 4.5260 1.6841 0.1039
10 6 3.3264 1.2575 -0.7663
11 1 3.2592 1.9235 -1.6266
12 7 3.5491 -0.1131 -1.2457
13 6 4.6149 -0.1510 -2.2558
14 6 3.8498 -1.0189 -0.1290
15 6 3.6712 -2.4464 -0.5781
16 1 3.3654 -2.6593 -1.5917
17 6 3.8993 -3.4805 0.3049
18 7 3.7440 -4.7262 -0.0871
19 14 4.4290 -3.1122 2.0580
20 1 3.2273 -2.9718 2.9191
21 1 5.2734 -4.2241 2.5639
22 1 5.2074 -1.8479 2.0846
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3634 0.5139 -0.8899
26 1 1.3616 2.3892 1.7780
27 1 2.3221 0.9133 2.1225
28 1 5.2493 2.2475 -0.4857
29 1 4.9985 0.8175 0.5661
30 1 5.5582 0.1499 -1.8002
31 1 4.7077 -1.1636 -2.6483
32 1 4.3696 0.5327 -3.0686
33 1 4.8790 -0.8662 0.1958
34 1 3.1727 -0.8114 0.6997
35 1 3.9041 -5.4538 0.5342
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000696851566.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:31
Heat of formation + Delta-G solvation = -77.503239 kcal
Electronic energy + Delta-G solvation = -19624.121333 eV
Core-core repulsion = 16558.290675 eV
Total energy + Delta-G solvation = -3065.830658 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.20838 -37.07391 -36.44056 -36.03364 -33.05062 -32.02671 -29.21696 -27.94442
-26.83161 -25.31742 -23.88894 -21.47845 -19.41144 -18.97353 -17.33793 -16.92151
-16.45433 -16.09847 -15.69035 -15.12957 -14.72439 -14.34184 -14.12749 -13.81219
-13.38761 -13.16421 -12.88788 -12.72805 -12.37415 -12.20150 -12.07809 -11.69983
-11.50696 -11.36691 -11.17098 -10.81384 -10.69834 -10.56427 -10.36190 -10.11793
-9.86312 -9.34790 -9.24179 -8.51659 -7.46977 -6.01835 -3.96631 0.02736
2.41411 3.29004 3.35923 3.38014 3.54771 3.82640 3.95412 4.31539
4.43763 4.60986 4.67319 4.93090 5.00505 5.06108 5.31188 5.35483
5.57173 5.60198 5.63379 5.69895 5.93615 5.97359 6.06132 6.15148
6.60480 6.82061 6.94741 7.38972 7.68013 7.83835 7.96328 8.68179
9.08190 9.60388 11.11695
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.020778 B = 0.008472 C = 0.007929
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1347.281405 B = 3304.024852 C = 3530.281309
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.316 6.316
3 C 0.101 3.899
4 H 0.082 0.918
5 C -0.611 4.611
6 S 2.376 3.624
7 O -0.936 6.936
8 O -0.939 6.939
9 C -0.617 4.617
10 C 0.084 3.916
11 H 0.102 0.898
12 N -0.493 5.493
13 C 0.030 3.970
14 C 0.158 3.842
15 C -0.492 4.492
16 H 0.080 0.920
17 C 0.068 3.932
18 N -0.903 5.903
19 Si 0.865 3.135
20 H -0.274 1.274
21 H -0.286 1.286
22 H -0.268 1.268
23 H 0.089 0.911
24 H 0.031 0.969
25 H 0.038 0.962
26 H 0.135 0.865
27 H 0.148 0.852
28 H 0.137 0.863
29 H 0.150 0.850
30 H 0.016 0.984
31 H 0.081 0.919
32 H 0.050 0.950
33 H -0.013 1.013
34 H 0.044 0.956
35 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.325 13.896 0.391 14.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.232 6.232
3 C 0.040 3.960
4 H 0.100 0.900
5 C -0.741 4.741
6 S 2.560 3.440
7 O -0.933 6.933
8 O -0.936 6.936
9 C -0.749 4.749
10 C -0.028 4.028
11 H 0.120 0.880
12 N -0.216 5.216
13 C -0.118 4.118
14 C 0.033 3.967
15 C -0.531 4.531
16 H 0.098 0.902
17 C -0.133 4.133
18 N -0.543 5.543
19 Si 0.692 3.308
20 H -0.200 1.200
21 H -0.212 1.212
22 H -0.193 1.193
23 H 0.107 0.893
24 H 0.050 0.950
25 H 0.056 0.944
26 H 0.153 0.847
27 H 0.166 0.834
28 H 0.155 0.845
29 H 0.168 0.832
30 H 0.035 0.965
31 H 0.100 0.900
32 H 0.068 0.932
33 H 0.005 0.995
34 H 0.061 0.939
35 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -3.334 14.203 0.719 14.607
hybrid contribution 0.545 -0.206 1.073 1.221
sum -2.789 13.997 1.792 14.385
Atomic orbital electron populations
1.22848 0.82602 1.03074 0.98776 1.88550 1.17978 1.22719 1.93958
1.22129 0.95829 0.88525 0.89491 0.89986 1.31086 1.20955 1.15722
1.06353 1.09342 0.79778 0.77455 0.77464 1.93609 1.84386 1.35601
1.79722 1.93607 1.70347 1.87675 1.41966 1.31175 1.10126 1.16594
1.17001 1.22120 0.88815 0.95630 0.96266 0.88036 1.62086 1.42982
1.02025 1.14476 1.22350 0.91784 1.03010 0.94669 1.20389 0.93347
0.93164 0.89810 1.20916 1.44683 0.87420 1.00068 0.90237 1.24850
0.95477 0.95016 0.97978 1.69885 1.50414 0.98482 1.35520 0.87028
0.79233 0.78298 0.86213 1.20017 1.21231 1.19263 0.89269 0.95023
0.94368 0.84679 0.83376 0.84477 0.83246 0.96536 0.90031 0.93160
0.99543 0.93870 0.92805
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.32 10.79 101.05 1.09 1.41 16
2 O -0.32 -5.42 6.80 -35.23 -0.24 -5.66 16
3 C 0.10 1.40 2.68 -26.41 -0.07 1.32 16
4 H 0.08 0.90 7.74 -51.93 -0.40 0.50 16
5 C -0.61 -7.36 6.97 37.79 0.26 -7.10 16
6 S 2.38 31.06 6.08 -107.50 -0.65 30.41 16
7 O -0.94 -13.69 18.16 -57.67 -1.05 -14.74 16
8 O -0.94 -15.54 18.17 -57.67 -1.05 -16.59 16
9 C -0.62 -8.26 5.90 37.79 0.22 -8.04 16
10 C 0.08 1.22 2.63 -67.39 -0.18 1.05 16
11 H 0.10 1.23 7.93 -51.93 -0.41 0.81 16
12 N -0.49 -9.33 3.97 -235.94 -0.94 -10.27 16
13 C 0.03 0.52 9.14 60.06 0.55 1.07 16
14 C 0.16 3.58 2.04 -4.98 -0.01 3.57 16
15 C -0.49 -13.49 9.17 -34.44 -0.32 -13.81 16
16 H 0.08 2.39 7.79 -52.49 -0.41 1.99 16
17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16
18 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16
19 Si 0.86 21.22 27.47 -169.99 -4.67 16.55 16
20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16
21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16
22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16
23 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16
24 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16
25 H 0.04 0.44 8.07 -51.93 -0.42 0.03 16
26 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16
27 H 0.15 1.90 8.05 -51.93 -0.42 1.48 16
28 H 0.14 1.46 8.14 -51.93 -0.42 1.03 16
29 H 0.15 2.29 5.50 -51.93 -0.29 2.01 16
30 H 0.02 0.26 7.52 -51.93 -0.39 -0.13 16
31 H 0.08 1.58 7.34 -51.93 -0.38 1.20 16
32 H 0.05 0.71 8.01 -51.92 -0.42 0.30 16
33 H -0.01 -0.29 5.49 -51.93 -0.29 -0.57 16
34 H 0.04 0.98 5.20 -51.93 -0.27 0.71 16
35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 289.67 15.07 4.37 4.37
Total: -1.00 -34.94 289.67 -6.95 -41.89
By element:
Atomic # 1 Polarization: 4.24 SS G_CDS: -4.95 Total: -0.71 kcal
Atomic # 6 Polarization: -20.16 SS G_CDS: 1.45 Total: -18.70 kcal
Atomic # 7 Polarization: -36.65 SS G_CDS: -0.16 Total: -36.81 kcal
Atomic # 8 Polarization: -34.65 SS G_CDS: -2.33 Total: -36.99 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal
Atomic # 16 Polarization: 31.06 SS G_CDS: -0.65 Total: 30.41 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -34.94 -6.95 -41.89 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000696851566.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.618 kcal
(2) G-P(sol) polarization free energy of solvation -34.940 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds