Wall clock time and date at job start Mon Mar 30 2020 05:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99807 * 2 1 4 4 H 1.08995 * 108.89586 * 330.69975 * 3 2 1 5 5 C 1.54214 * 108.92756 * 89.37245 * 3 2 1 6 6 S 1.83825 * 102.86215 * 145.65104 * 5 3 2 7 7 O 1.42094 * 109.81070 * 77.68519 * 6 5 3 8 8 O 1.42100 * 109.81001 * 212.00112 * 6 5 3 9 9 C 1.83823 * 94.23593 * 324.85804 * 6 5 3 10 10 C 1.52380 * 108.81829 * 212.09429 * 3 2 1 11 11 H 1.08996 * 108.92971 * 118.58996 * 10 3 2 12 12 N 1.46904 * 108.92714 * 0.07354 * 10 3 2 13 13 C 1.46897 * 111.00185 * 166.06765 * 12 10 3 14 14 C 1.46897 * 110.99841 * 290.02058 * 12 10 3 15 15 C 1.50705 * 109.46830 * 163.41700 * 14 12 10 16 16 H 1.07999 * 119.99958 * 0.02562 * 15 14 12 17 17 C 1.37881 * 119.99865 * 179.97438 * 15 14 12 18 18 N 1.31514 * 119.99861 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99892 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47437 * 89.99441 * 19 17 15 21 21 H 1.48506 * 109.46872 * 209.99435 * 19 17 15 22 22 H 1.48495 * 109.46977 * 329.99009 * 19 17 15 23 23 H 1.08993 * 109.47175 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46878 * 299.99691 * 1 2 3 25 25 H 1.09000 * 109.47339 * 59.99631 * 1 2 3 26 26 H 1.08997 * 110.73540 * 263.99575 * 5 3 2 27 27 H 1.08998 * 110.73115 * 27.30585 * 5 3 2 28 28 H 1.09003 * 110.73573 * 153.48115 * 9 6 5 29 29 H 1.08992 * 110.74074 * 276.61669 * 9 6 5 30 30 H 1.08995 * 109.47140 * 64.25763 * 13 12 10 31 31 H 1.09001 * 109.46994 * 184.25993 * 13 12 10 32 32 H 1.09008 * 109.47038 * 304.25861 * 13 12 10 33 33 H 1.09000 * 109.47469 * 283.41956 * 14 12 10 34 34 H 1.09003 * 109.47354 * 43.42381 * 14 12 10 35 35 H 0.97004 * 120.00063 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3322 1.9937 -0.5047 5 6 2.1991 1.7689 1.4587 6 16 3.7469 2.7572 1.3769 7 8 3.4723 4.0375 0.8251 8 8 4.4561 2.6437 2.6030 9 6 4.5260 1.6841 0.1039 10 6 3.3264 1.2575 -0.7663 11 1 3.2592 1.9235 -1.6266 12 7 3.5491 -0.1131 -1.2457 13 6 4.6149 -0.1510 -2.2558 14 6 3.8498 -1.0189 -0.1290 15 6 3.6712 -2.4464 -0.5781 16 1 3.3654 -2.6593 -1.5917 17 6 3.8993 -3.4805 0.3049 18 7 3.7440 -4.7262 -0.0871 19 14 4.4290 -3.1122 2.0580 20 1 3.2273 -2.9718 2.9191 21 1 5.2734 -4.2241 2.5639 22 1 5.2074 -1.8479 2.0846 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.3616 2.3892 1.7780 27 1 2.3221 0.9133 2.1225 28 1 5.2493 2.2475 -0.4857 29 1 4.9985 0.8175 0.5661 30 1 5.5582 0.1499 -1.8002 31 1 4.7077 -1.1636 -2.6483 32 1 4.3696 0.5327 -3.0686 33 1 4.8790 -0.8662 0.1958 34 1 3.1727 -0.8114 0.6997 35 1 3.9041 -5.4538 0.5342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696851566.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:31 Heat of formation + Delta-G solvation = -77.503239 kcal Electronic energy + Delta-G solvation = -19624.121333 eV Core-core repulsion = 16558.290675 eV Total energy + Delta-G solvation = -3065.830658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.20838 -37.07391 -36.44056 -36.03364 -33.05062 -32.02671 -29.21696 -27.94442 -26.83161 -25.31742 -23.88894 -21.47845 -19.41144 -18.97353 -17.33793 -16.92151 -16.45433 -16.09847 -15.69035 -15.12957 -14.72439 -14.34184 -14.12749 -13.81219 -13.38761 -13.16421 -12.88788 -12.72805 -12.37415 -12.20150 -12.07809 -11.69983 -11.50696 -11.36691 -11.17098 -10.81384 -10.69834 -10.56427 -10.36190 -10.11793 -9.86312 -9.34790 -9.24179 -8.51659 -7.46977 -6.01835 -3.96631 0.02736 2.41411 3.29004 3.35923 3.38014 3.54771 3.82640 3.95412 4.31539 4.43763 4.60986 4.67319 4.93090 5.00505 5.06108 5.31188 5.35483 5.57173 5.60198 5.63379 5.69895 5.93615 5.97359 6.06132 6.15148 6.60480 6.82061 6.94741 7.38972 7.68013 7.83835 7.96328 8.68179 9.08190 9.60388 11.11695 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.008472 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.281405 B = 3304.024852 C = 3530.281309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.316 6.316 3 C 0.101 3.899 4 H 0.082 0.918 5 C -0.611 4.611 6 S 2.376 3.624 7 O -0.936 6.936 8 O -0.939 6.939 9 C -0.617 4.617 10 C 0.084 3.916 11 H 0.102 0.898 12 N -0.493 5.493 13 C 0.030 3.970 14 C 0.158 3.842 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.068 3.932 18 N -0.903 5.903 19 Si 0.865 3.135 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.268 1.268 23 H 0.089 0.911 24 H 0.031 0.969 25 H 0.038 0.962 26 H 0.135 0.865 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.150 0.850 30 H 0.016 0.984 31 H 0.081 0.919 32 H 0.050 0.950 33 H -0.013 1.013 34 H 0.044 0.956 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 13.896 0.391 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.232 6.232 3 C 0.040 3.960 4 H 0.100 0.900 5 C -0.741 4.741 6 S 2.560 3.440 7 O -0.933 6.933 8 O -0.936 6.936 9 C -0.749 4.749 10 C -0.028 4.028 11 H 0.120 0.880 12 N -0.216 5.216 13 C -0.118 4.118 14 C 0.033 3.967 15 C -0.531 4.531 16 H 0.098 0.902 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.692 3.308 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.193 1.193 23 H 0.107 0.893 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.153 0.847 27 H 0.166 0.834 28 H 0.155 0.845 29 H 0.168 0.832 30 H 0.035 0.965 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.005 0.995 34 H 0.061 0.939 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.334 14.203 0.719 14.607 hybrid contribution 0.545 -0.206 1.073 1.221 sum -2.789 13.997 1.792 14.385 Atomic orbital electron populations 1.22848 0.82602 1.03074 0.98776 1.88550 1.17978 1.22719 1.93958 1.22129 0.95829 0.88525 0.89491 0.89986 1.31086 1.20955 1.15722 1.06353 1.09342 0.79778 0.77455 0.77464 1.93609 1.84386 1.35601 1.79722 1.93607 1.70347 1.87675 1.41966 1.31175 1.10126 1.16594 1.17001 1.22120 0.88815 0.95630 0.96266 0.88036 1.62086 1.42982 1.02025 1.14476 1.22350 0.91784 1.03010 0.94669 1.20389 0.93347 0.93164 0.89810 1.20916 1.44683 0.87420 1.00068 0.90237 1.24850 0.95477 0.95016 0.97978 1.69885 1.50414 0.98482 1.35520 0.87028 0.79233 0.78298 0.86213 1.20017 1.21231 1.19263 0.89269 0.95023 0.94368 0.84679 0.83376 0.84477 0.83246 0.96536 0.90031 0.93160 0.99543 0.93870 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.79 101.05 1.09 1.41 16 2 O -0.32 -5.42 6.80 -35.23 -0.24 -5.66 16 3 C 0.10 1.40 2.68 -26.41 -0.07 1.32 16 4 H 0.08 0.90 7.74 -51.93 -0.40 0.50 16 5 C -0.61 -7.36 6.97 37.79 0.26 -7.10 16 6 S 2.38 31.06 6.08 -107.50 -0.65 30.41 16 7 O -0.94 -13.69 18.16 -57.67 -1.05 -14.74 16 8 O -0.94 -15.54 18.17 -57.67 -1.05 -16.59 16 9 C -0.62 -8.26 5.90 37.79 0.22 -8.04 16 10 C 0.08 1.22 2.63 -67.39 -0.18 1.05 16 11 H 0.10 1.23 7.93 -51.93 -0.41 0.81 16 12 N -0.49 -9.33 3.97 -235.94 -0.94 -10.27 16 13 C 0.03 0.52 9.14 60.06 0.55 1.07 16 14 C 0.16 3.58 2.04 -4.98 -0.01 3.57 16 15 C -0.49 -13.49 9.17 -34.44 -0.32 -13.81 16 16 H 0.08 2.39 7.79 -52.49 -0.41 1.99 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 19 Si 0.86 21.22 27.47 -169.99 -4.67 16.55 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.44 8.07 -51.93 -0.42 0.03 16 26 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.15 1.90 8.05 -51.93 -0.42 1.48 16 28 H 0.14 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.15 2.29 5.50 -51.93 -0.29 2.01 16 30 H 0.02 0.26 7.52 -51.93 -0.39 -0.13 16 31 H 0.08 1.58 7.34 -51.93 -0.38 1.20 16 32 H 0.05 0.71 8.01 -51.92 -0.42 0.30 16 33 H -0.01 -0.29 5.49 -51.93 -0.29 -0.57 16 34 H 0.04 0.98 5.20 -51.93 -0.27 0.71 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 289.67 15.07 4.37 4.37 Total: -1.00 -34.94 289.67 -6.95 -41.89 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.95 Total: -0.71 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 1.45 Total: -18.70 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.16 Total: -36.81 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -2.33 Total: -36.99 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 16 Polarization: 31.06 SS G_CDS: -0.65 Total: 30.41 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.94 -6.95 -41.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696851566.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.618 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds