Wall clock time and date at job start Mon Mar 30 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99807 * 2 1 4 4 H 1.08995 * 108.89586 * 330.69975 * 3 2 1 5 5 C 1.54214 * 108.92756 * 89.37245 * 3 2 1 6 6 S 1.83825 * 102.86215 * 145.65104 * 5 3 2 7 7 O 1.42094 * 109.81070 * 77.68519 * 6 5 3 8 8 O 1.42100 * 109.81001 * 212.00112 * 6 5 3 9 9 C 1.83823 * 94.23593 * 324.85804 * 6 5 3 10 10 C 1.52380 * 108.81829 * 212.09429 * 3 2 1 11 11 H 1.08996 * 108.92971 * 118.58996 * 10 3 2 12 12 N 1.46904 * 108.92714 * 0.07354 * 10 3 2 13 13 C 1.46897 * 111.00185 * 166.06765 * 12 10 3 14 14 C 1.46897 * 110.99841 * 290.02058 * 12 10 3 15 15 C 1.50705 * 109.46830 * 163.41700 * 14 12 10 16 16 H 1.07999 * 119.99958 * 0.02562 * 15 14 12 17 17 C 1.37881 * 119.99865 * 179.97438 * 15 14 12 18 18 N 1.31514 * 119.99861 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99892 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47437 * 89.99441 * 19 17 15 21 21 H 1.48506 * 109.46872 * 209.99435 * 19 17 15 22 22 H 1.48495 * 109.46977 * 329.99009 * 19 17 15 23 23 H 1.08993 * 109.47175 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46878 * 299.99691 * 1 2 3 25 25 H 1.09000 * 109.47339 * 59.99631 * 1 2 3 26 26 H 1.08997 * 110.73540 * 263.99575 * 5 3 2 27 27 H 1.08998 * 110.73115 * 27.30585 * 5 3 2 28 28 H 1.09003 * 110.73573 * 153.48115 * 9 6 5 29 29 H 1.08992 * 110.74074 * 276.61669 * 9 6 5 30 30 H 1.08995 * 109.47140 * 64.25763 * 13 12 10 31 31 H 1.09001 * 109.46994 * 184.25993 * 13 12 10 32 32 H 1.09008 * 109.47038 * 304.25861 * 13 12 10 33 33 H 1.09000 * 109.47469 * 283.41956 * 14 12 10 34 34 H 1.09003 * 109.47354 * 43.42381 * 14 12 10 35 35 H 0.97004 * 120.00063 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3322 1.9937 -0.5047 5 6 2.1991 1.7689 1.4587 6 16 3.7469 2.7572 1.3769 7 8 3.4723 4.0375 0.8251 8 8 4.4561 2.6437 2.6030 9 6 4.5260 1.6841 0.1039 10 6 3.3264 1.2575 -0.7663 11 1 3.2592 1.9235 -1.6266 12 7 3.5491 -0.1131 -1.2457 13 6 4.6149 -0.1510 -2.2558 14 6 3.8498 -1.0189 -0.1290 15 6 3.6712 -2.4464 -0.5781 16 1 3.3654 -2.6593 -1.5917 17 6 3.8993 -3.4805 0.3049 18 7 3.7440 -4.7262 -0.0871 19 14 4.4290 -3.1122 2.0580 20 1 3.2273 -2.9718 2.9191 21 1 5.2734 -4.2241 2.5639 22 1 5.2074 -1.8479 2.0846 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.3616 2.3892 1.7780 27 1 2.3221 0.9133 2.1225 28 1 5.2493 2.2475 -0.4857 29 1 4.9985 0.8175 0.5661 30 1 5.5582 0.1499 -1.8002 31 1 4.7077 -1.1636 -2.6483 32 1 4.3696 0.5327 -3.0686 33 1 4.8790 -0.8662 0.1958 34 1 3.1727 -0.8114 0.6997 35 1 3.9041 -5.4538 0.5342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696851566.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:30 Heat of formation + Delta-G solvation = -106.810418 kcal Electronic energy + Delta-G solvation = -19625.392188 eV Core-core repulsion = 16558.290675 eV Total energy + Delta-G solvation = -3067.101513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.40152 -38.19563 -37.71784 -37.15786 -34.83026 -33.55528 -30.48498 -29.58290 -27.89666 -26.50469 -25.45437 -22.93540 -20.73395 -20.04370 -19.06597 -17.99342 -17.88068 -17.21954 -16.84870 -16.45232 -15.99605 -15.80095 -15.49919 -15.18800 -14.78882 -14.47147 -14.23823 -13.98096 -13.82481 -13.34210 -13.22077 -13.09877 -12.93451 -12.70735 -12.61241 -12.30349 -11.94340 -11.90924 -11.78367 -11.66003 -11.41599 -11.22592 -10.66665 -10.39638 -8.92052 -8.20524 -6.18742 -0.99627 1.35309 1.36582 1.41468 1.44416 2.37797 2.52780 2.76199 2.90010 3.14437 3.23652 3.57659 3.68685 3.84835 3.96631 4.02073 4.41455 4.54860 4.60087 4.65145 4.67466 4.70549 4.78207 4.92388 5.02395 5.11405 5.16891 5.31420 5.71050 6.03543 6.32703 6.54044 6.74622 6.86659 7.42256 8.96802 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.008472 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.281405 B = 3304.024852 C = 3530.281309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.358 6.358 3 C 0.090 3.910 4 H 0.117 0.883 5 C -0.601 4.601 6 S 2.403 3.597 7 O -0.948 6.948 8 O -0.976 6.976 9 C -0.618 4.618 10 C 0.076 3.924 11 H 0.134 0.866 12 N -0.510 5.510 13 C 0.031 3.969 14 C 0.171 3.829 15 C -0.489 4.489 16 H 0.035 0.965 17 C 0.007 3.993 18 N -0.954 5.954 19 Si 0.925 3.075 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.248 1.248 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.171 0.829 27 H 0.141 0.859 28 H 0.165 0.835 29 H 0.131 0.869 30 H 0.027 0.973 31 H 0.045 0.955 32 H 0.084 0.916 33 H -0.014 1.014 34 H 0.050 0.950 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 16.654 1.157 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.276 6.276 3 C 0.030 3.970 4 H 0.135 0.865 5 C -0.732 4.732 6 S 2.589 3.411 7 O -0.945 6.945 8 O -0.973 6.973 9 C -0.750 4.750 10 C -0.035 4.035 11 H 0.152 0.848 12 N -0.233 5.233 13 C -0.118 4.118 14 C 0.044 3.956 15 C -0.528 4.528 16 H 0.053 0.947 17 C -0.189 4.189 18 N -0.596 5.596 19 Si 0.750 3.250 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.171 1.171 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.189 0.811 27 H 0.160 0.840 28 H 0.183 0.817 29 H 0.149 0.851 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.004 0.996 34 H 0.067 0.933 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.730 17.005 1.477 17.472 hybrid contribution 0.602 -1.038 0.696 1.387 sum -3.128 15.968 2.173 16.416 Atomic orbital electron populations 1.22956 0.81171 1.02728 1.00857 1.88462 1.19815 1.24955 1.94322 1.22425 0.95848 0.88122 0.90625 0.86541 1.31057 1.21165 1.15539 1.05477 1.08501 0.79547 0.76885 0.76212 1.93589 1.84612 1.36578 1.79723 1.93561 1.71780 1.88169 1.43743 1.31168 1.10341 1.16222 1.17292 1.22410 0.89721 0.93355 0.98011 0.84820 1.61857 1.43556 1.04277 1.13618 1.22340 0.92191 1.01839 0.95389 1.20095 0.93267 0.91082 0.91159 1.21213 1.43049 0.90486 0.98063 0.94674 1.25699 0.95937 0.94709 1.02562 1.70049 1.52668 0.99690 1.37207 0.86038 0.79369 0.78810 0.80820 1.18890 1.21276 1.17150 0.91003 0.92542 0.92582 0.81095 0.84044 0.81702 0.85103 0.95491 0.93616 0.89706 0.99637 0.93266 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.79 113.37 1.22 1.70 16 2 O -0.36 -11.56 6.80 -148.98 -1.01 -12.57 16 3 C 0.09 2.16 2.68 30.80 0.08 2.24 16 4 H 0.12 1.97 7.74 -2.39 -0.02 1.95 16 5 C -0.60 -12.23 6.97 72.39 0.50 -11.73 16 6 S 2.40 55.38 6.08 -56.49 -0.34 55.03 16 7 O -0.95 -24.34 18.16 -127.53 -2.32 -26.66 16 8 O -0.98 -30.22 18.17 -127.53 -2.32 -32.54 16 9 C -0.62 -14.68 5.90 72.39 0.43 -14.25 16 10 C 0.08 1.98 2.63 45.12 0.12 2.09 16 11 H 0.13 2.60 7.93 -2.39 -0.02 2.58 16 12 N -0.51 -18.60 3.97 -900.38 -3.57 -22.17 16 13 C 0.03 1.01 9.14 127.69 1.17 2.18 16 14 C 0.17 7.60 2.04 85.56 0.17 7.78 16 15 C -0.49 -27.58 9.17 25.60 0.23 -27.34 16 16 H 0.03 2.23 7.79 -2.91 -0.02 2.21 16 17 C 0.01 0.40 5.47 84.66 0.46 0.86 16 18 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 19 Si 0.93 43.80 27.47 68.60 1.88 45.69 16 20 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 23 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 1.15 8.07 -2.39 -0.02 1.13 16 26 H 0.17 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.14 3.20 8.05 -2.39 -0.02 3.18 16 28 H 0.17 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.13 3.73 5.50 -2.39 -0.01 3.71 16 30 H 0.03 0.82 7.52 -2.39 -0.02 0.80 16 31 H 0.04 1.82 7.34 -2.39 -0.02 1.80 16 32 H 0.08 2.19 8.01 -2.38 -0.02 2.17 16 33 H -0.01 -0.61 5.49 -2.39 -0.01 -0.62 16 34 H 0.05 2.16 5.20 -2.39 -0.01 2.15 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -77.61 289.67 -1.96 -79.57 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.02 Total: 9.60 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 4.40 Total: -36.47 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -3.27 Total: -81.65 kcal Atomic # 8 Polarization: -66.12 SS G_CDS: -5.65 Total: -71.77 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 16 Polarization: 55.38 SS G_CDS: -0.34 Total: 55.03 kcal Total: -77.61 -1.96 -79.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696851566.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.240 kcal (2) G-P(sol) polarization free energy of solvation -77.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds