Wall clock time and date at job start Mon Mar 30 2020 05:13:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42899 * 113.99807 * 2 1
4 4 H 1.08995 * 108.89586 * 330.69975 * 3 2 1
5 5 C 1.54214 * 108.92756 * 89.37245 * 3 2 1
6 6 S 1.83825 * 102.86215 * 145.65104 * 5 3 2
7 7 O 1.42094 * 109.81070 * 77.68519 * 6 5 3
8 8 O 1.42100 * 109.81001 * 212.00112 * 6 5 3
9 9 C 1.83823 * 94.23593 * 324.85804 * 6 5 3
10 10 C 1.52380 * 108.81829 * 212.09429 * 3 2 1
11 11 H 1.08996 * 108.92971 * 118.58996 * 10 3 2
12 12 N 1.46904 * 108.92714 * 0.07354 * 10 3 2
13 13 C 1.46897 * 111.00185 * 166.06765 * 12 10 3
14 14 C 1.46897 * 110.99841 * 290.02058 * 12 10 3
15 15 C 1.50705 * 109.46830 * 163.41700 * 14 12 10
16 16 H 1.07999 * 119.99958 * 0.02562 * 15 14 12
17 17 C 1.37881 * 119.99865 * 179.97438 * 15 14 12
18 18 N 1.31514 * 119.99861 * 180.02562 * 17 15 14
19 19 Si 1.86803 * 119.99892 * 0.02562 * 17 15 14
20 20 H 1.48495 * 109.47437 * 89.99441 * 19 17 15
21 21 H 1.48506 * 109.46872 * 209.99435 * 19 17 15
22 22 H 1.48495 * 109.46977 * 329.99009 * 19 17 15
23 23 H 1.08993 * 109.47175 * 180.02562 * 1 2 3
24 24 H 1.09001 * 109.46878 * 299.99691 * 1 2 3
25 25 H 1.09000 * 109.47339 * 59.99631 * 1 2 3
26 26 H 1.08997 * 110.73540 * 263.99575 * 5 3 2
27 27 H 1.08998 * 110.73115 * 27.30585 * 5 3 2
28 28 H 1.09003 * 110.73573 * 153.48115 * 9 6 5
29 29 H 1.08992 * 110.74074 * 276.61669 * 9 6 5
30 30 H 1.08995 * 109.47140 * 64.25763 * 13 12 10
31 31 H 1.09001 * 109.46994 * 184.25993 * 13 12 10
32 32 H 1.09008 * 109.47038 * 304.25861 * 13 12 10
33 33 H 1.09000 * 109.47469 * 283.41956 * 14 12 10
34 34 H 1.09003 * 109.47354 * 43.42381 * 14 12 10
35 35 H 0.97004 * 120.00063 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3322 1.9937 -0.5047
5 6 2.1991 1.7689 1.4587
6 16 3.7469 2.7572 1.3769
7 8 3.4723 4.0375 0.8251
8 8 4.4561 2.6437 2.6030
9 6 4.5260 1.6841 0.1039
10 6 3.3264 1.2575 -0.7663
11 1 3.2592 1.9235 -1.6266
12 7 3.5491 -0.1131 -1.2457
13 6 4.6149 -0.1510 -2.2558
14 6 3.8498 -1.0189 -0.1290
15 6 3.6712 -2.4464 -0.5781
16 1 3.3654 -2.6593 -1.5917
17 6 3.8993 -3.4805 0.3049
18 7 3.7440 -4.7262 -0.0871
19 14 4.4290 -3.1122 2.0580
20 1 3.2273 -2.9718 2.9191
21 1 5.2734 -4.2241 2.5639
22 1 5.2074 -1.8479 2.0846
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3634 0.5139 -0.8899
26 1 1.3616 2.3892 1.7780
27 1 2.3221 0.9133 2.1225
28 1 5.2493 2.2475 -0.4857
29 1 4.9985 0.8175 0.5661
30 1 5.5582 0.1499 -1.8002
31 1 4.7077 -1.1636 -2.6483
32 1 4.3696 0.5327 -3.0686
33 1 4.8790 -0.8662 0.1958
34 1 3.1727 -0.8114 0.6997
35 1 3.9041 -5.4538 0.5342
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000696851566.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:30
Heat of formation + Delta-G solvation = -106.810418 kcal
Electronic energy + Delta-G solvation = -19625.392188 eV
Core-core repulsion = 16558.290675 eV
Total energy + Delta-G solvation = -3067.101513 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.40152 -38.19563 -37.71784 -37.15786 -34.83026 -33.55528 -30.48498 -29.58290
-27.89666 -26.50469 -25.45437 -22.93540 -20.73395 -20.04370 -19.06597 -17.99342
-17.88068 -17.21954 -16.84870 -16.45232 -15.99605 -15.80095 -15.49919 -15.18800
-14.78882 -14.47147 -14.23823 -13.98096 -13.82481 -13.34210 -13.22077 -13.09877
-12.93451 -12.70735 -12.61241 -12.30349 -11.94340 -11.90924 -11.78367 -11.66003
-11.41599 -11.22592 -10.66665 -10.39638 -8.92052 -8.20524 -6.18742 -0.99627
1.35309 1.36582 1.41468 1.44416 2.37797 2.52780 2.76199 2.90010
3.14437 3.23652 3.57659 3.68685 3.84835 3.96631 4.02073 4.41455
4.54860 4.60087 4.65145 4.67466 4.70549 4.78207 4.92388 5.02395
5.11405 5.16891 5.31420 5.71050 6.03543 6.32703 6.54044 6.74622
6.86659 7.42256 8.96802
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.020778 B = 0.008472 C = 0.007929
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1347.281405 B = 3304.024852 C = 3530.281309
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.358 6.358
3 C 0.090 3.910
4 H 0.117 0.883
5 C -0.601 4.601
6 S 2.403 3.597
7 O -0.948 6.948
8 O -0.976 6.976
9 C -0.618 4.618
10 C 0.076 3.924
11 H 0.134 0.866
12 N -0.510 5.510
13 C 0.031 3.969
14 C 0.171 3.829
15 C -0.489 4.489
16 H 0.035 0.965
17 C 0.007 3.993
18 N -0.954 5.954
19 Si 0.925 3.075
20 H -0.264 1.264
21 H -0.287 1.287
22 H -0.248 1.248
23 H 0.071 0.929
24 H 0.056 0.944
25 H 0.056 0.944
26 H 0.171 0.829
27 H 0.141 0.859
28 H 0.165 0.835
29 H 0.131 0.869
30 H 0.027 0.973
31 H 0.045 0.955
32 H 0.084 0.916
33 H -0.014 1.014
34 H 0.050 0.950
35 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.731 16.654 1.157 17.106
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.276 6.276
3 C 0.030 3.970
4 H 0.135 0.865
5 C -0.732 4.732
6 S 2.589 3.411
7 O -0.945 6.945
8 O -0.973 6.973
9 C -0.750 4.750
10 C -0.035 4.035
11 H 0.152 0.848
12 N -0.233 5.233
13 C -0.118 4.118
14 C 0.044 3.956
15 C -0.528 4.528
16 H 0.053 0.947
17 C -0.189 4.189
18 N -0.596 5.596
19 Si 0.750 3.250
20 H -0.189 1.189
21 H -0.213 1.213
22 H -0.171 1.171
23 H 0.090 0.910
24 H 0.075 0.925
25 H 0.074 0.926
26 H 0.189 0.811
27 H 0.160 0.840
28 H 0.183 0.817
29 H 0.149 0.851
30 H 0.045 0.955
31 H 0.064 0.936
32 H 0.103 0.897
33 H 0.004 0.996
34 H 0.067 0.933
35 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -3.730 17.005 1.477 17.472
hybrid contribution 0.602 -1.038 0.696 1.387
sum -3.128 15.968 2.173 16.416
Atomic orbital electron populations
1.22956 0.81171 1.02728 1.00857 1.88462 1.19815 1.24955 1.94322
1.22425 0.95848 0.88122 0.90625 0.86541 1.31057 1.21165 1.15539
1.05477 1.08501 0.79547 0.76885 0.76212 1.93589 1.84612 1.36578
1.79723 1.93561 1.71780 1.88169 1.43743 1.31168 1.10341 1.16222
1.17292 1.22410 0.89721 0.93355 0.98011 0.84820 1.61857 1.43556
1.04277 1.13618 1.22340 0.92191 1.01839 0.95389 1.20095 0.93267
0.91082 0.91159 1.21213 1.43049 0.90486 0.98063 0.94674 1.25699
0.95937 0.94709 1.02562 1.70049 1.52668 0.99690 1.37207 0.86038
0.79369 0.78810 0.80820 1.18890 1.21276 1.17150 0.91003 0.92542
0.92582 0.81095 0.84044 0.81702 0.85103 0.95491 0.93616 0.89706
0.99637 0.93266 0.92879
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.48 10.79 113.37 1.22 1.70 16
2 O -0.36 -11.56 6.80 -148.98 -1.01 -12.57 16
3 C 0.09 2.16 2.68 30.80 0.08 2.24 16
4 H 0.12 1.97 7.74 -2.39 -0.02 1.95 16
5 C -0.60 -12.23 6.97 72.39 0.50 -11.73 16
6 S 2.40 55.38 6.08 -56.49 -0.34 55.03 16
7 O -0.95 -24.34 18.16 -127.53 -2.32 -26.66 16
8 O -0.98 -30.22 18.17 -127.53 -2.32 -32.54 16
9 C -0.62 -14.68 5.90 72.39 0.43 -14.25 16
10 C 0.08 1.98 2.63 45.12 0.12 2.09 16
11 H 0.13 2.60 7.93 -2.39 -0.02 2.58 16
12 N -0.51 -18.60 3.97 -900.38 -3.57 -22.17 16
13 C 0.03 1.01 9.14 127.69 1.17 2.18 16
14 C 0.17 7.60 2.04 85.56 0.17 7.78 16
15 C -0.49 -27.58 9.17 25.60 0.23 -27.34 16
16 H 0.03 2.23 7.79 -2.91 -0.02 2.21 16
17 C 0.01 0.40 5.47 84.66 0.46 0.86 16
18 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16
19 Si 0.93 43.80 27.47 68.60 1.88 45.69 16
20 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16
21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
22 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16
23 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
25 H 0.06 1.15 8.07 -2.39 -0.02 1.13 16
26 H 0.17 2.20 8.14 -2.39 -0.02 2.18 16
27 H 0.14 3.20 8.05 -2.39 -0.02 3.18 16
28 H 0.17 2.88 8.14 -2.39 -0.02 2.86 16
29 H 0.13 3.73 5.50 -2.39 -0.01 3.71 16
30 H 0.03 0.82 7.52 -2.39 -0.02 0.80 16
31 H 0.04 1.82 7.34 -2.39 -0.02 1.80 16
32 H 0.08 2.19 8.01 -2.38 -0.02 2.17 16
33 H -0.01 -0.61 5.49 -2.39 -0.01 -0.62 16
34 H 0.05 2.16 5.20 -2.39 -0.01 2.15 16
35 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16
Total: -1.00 -77.61 289.67 -1.96 -79.57
By element:
Atomic # 1 Polarization: 8.57 SS G_CDS: 1.02 Total: 9.60 kcal
Atomic # 6 Polarization: -40.86 SS G_CDS: 4.40 Total: -36.47 kcal
Atomic # 7 Polarization: -78.38 SS G_CDS: -3.27 Total: -81.65 kcal
Atomic # 8 Polarization: -66.12 SS G_CDS: -5.65 Total: -71.77 kcal
Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal
Atomic # 16 Polarization: 55.38 SS G_CDS: -0.34 Total: 55.03 kcal
Total: -77.61 -1.96 -79.57 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000696851566.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.240 kcal
(2) G-P(sol) polarization free energy of solvation -77.615 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.855 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.956 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.810 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds