Wall clock time and date at job start Mon Mar 30 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47288 * 2 1 4 4 C 1.53004 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.45859 * 54.29971 * 4 3 2 6 6 C 1.54482 * 110.62636 * 291.61207 * 4 3 2 7 7 O 1.44427 * 104.80148 * 217.31953 * 6 4 3 8 8 C 1.44424 * 105.27650 * 40.51527 * 7 6 4 9 9 C 1.54483 * 104.80039 * 319.48511 * 8 7 6 10 10 H 1.08999 * 110.51172 * 265.33163 * 9 8 7 11 11 N 1.46505 * 110.62778 * 142.67837 * 9 8 7 12 12 S 1.65601 * 119.99867 * 100.28710 * 11 9 8 13 13 O 1.42094 * 106.40250 * 178.54206 * 12 11 9 14 14 O 1.42099 * 106.40257 * 311.46445 * 12 11 9 15 15 C 1.76205 * 107.21612 * 65.00207 * 12 11 9 16 16 H 1.07995 * 119.99909 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99809 * 180.02562 * 15 12 11 18 18 N 1.31509 * 120.00345 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99724 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47330 * 89.99824 * 19 17 15 21 21 H 1.48505 * 109.47102 * 209.99584 * 19 17 15 22 22 H 1.48498 * 109.47056 * 329.99761 * 19 17 15 23 23 H 1.09006 * 109.46883 * 300.00098 * 1 2 3 24 24 H 1.08994 * 109.46782 * 59.99719 * 1 2 3 25 25 H 1.08989 * 109.47231 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46602 * 239.99488 * 2 1 3 27 27 H 1.09003 * 109.47061 * 120.00255 * 2 1 3 28 28 H 1.08996 * 109.47194 * 60.00158 * 3 2 1 29 29 H 1.08996 * 109.47165 * 299.99421 * 3 2 1 30 30 H 1.08999 * 110.37325 * 336.15462 * 6 4 3 31 31 H 1.09000 * 110.36935 * 98.49059 * 6 4 3 32 32 H 1.08995 * 110.37617 * 200.65774 * 8 7 6 33 33 H 1.08998 * 110.46757 * 78.36346 * 8 7 6 34 34 H 0.97000 * 119.99990 * 280.29541 * 11 9 8 35 35 H 0.97002 * 120.00099 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9507 0.8465 -0.8302 6 6 4.1148 0.9096 1.3432 7 8 5.2843 1.7134 1.6120 8 6 4.9194 3.0567 1.2270 9 6 4.1116 2.8873 -0.0788 10 1 4.7599 3.0059 -0.9471 11 7 3.0063 3.8475 -0.1302 12 16 3.1524 5.2310 -1.0286 13 8 1.9182 5.9237 -0.9022 14 8 4.4050 5.8048 -0.6809 15 6 3.2795 4.7450 -2.7176 16 1 3.2526 3.6982 -2.9817 17 6 3.4134 5.7012 -3.7018 18 7 3.4467 6.9759 -3.3801 19 14 3.5474 5.1860 -5.4924 20 1 2.1900 5.1170 -6.0906 21 1 4.3651 6.1797 -6.2335 22 1 4.1938 3.8517 -5.5764 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6769 1.9563 -0.8900 30 1 3.3742 1.0415 2.1319 31 1 4.3896 -0.1412 1.2514 32 1 5.8121 3.6553 1.0460 33 1 4.3027 3.5197 1.9973 34 1 2.1889 3.6730 0.3621 35 1 3.5405 7.6486 -4.0726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699832207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:14 Heat of formation + Delta-G solvation = -152.962076 kcal Electronic energy + Delta-G solvation = -19043.270156 eV Core-core repulsion = 15974.167356 eV Total energy + Delta-G solvation = -3069.102799 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65369 -35.51712 -35.24141 -33.98709 -33.84925 -33.08793 -30.38229 -27.83835 -26.16841 -25.88324 -22.84463 -21.48127 -19.86701 -19.03345 -17.50746 -16.57246 -16.03893 -15.80058 -15.42555 -14.92893 -14.60838 -14.31802 -13.98034 -13.64104 -13.41981 -12.81057 -12.69877 -12.08012 -11.99709 -11.89854 -11.62667 -11.27754 -11.23405 -10.96790 -10.74000 -10.62656 -10.48294 -10.42332 -10.31812 -10.22797 -10.19260 -9.66564 -9.27352 -9.04897 -8.56488 -6.72905 -5.35180 2.29377 3.04728 3.11880 3.17724 4.00835 4.14421 4.60577 4.61802 4.77539 4.82901 4.97698 5.10699 5.18579 5.32615 5.39894 5.47616 5.61985 5.73865 5.78049 5.80969 5.85109 5.92370 6.03664 6.08511 6.16679 6.18696 6.34966 6.39889 6.46776 6.76257 6.99073 7.29634 7.83086 7.94224 8.86371 10.21392 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.007383 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.782134 B = 3791.709117 C = 4316.492618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.113 4.113 4 C -0.130 4.130 5 H 0.090 0.910 6 C 0.050 3.950 7 O -0.378 6.378 8 C 0.030 3.970 9 C 0.135 3.865 10 H 0.106 0.894 11 N -1.126 6.126 12 S 2.712 3.288 13 O -1.006 7.006 14 O -1.005 7.005 15 C -1.020 5.020 16 H 0.102 0.898 17 C 0.133 3.867 18 N -0.845 5.845 19 Si 0.920 3.080 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.262 1.262 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.403 0.597 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -12.838 5.282 14.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.150 4.150 5 H 0.108 0.892 6 C -0.027 4.027 7 O -0.296 6.296 8 C -0.049 4.049 9 C 0.025 3.975 10 H 0.123 0.877 11 N -0.881 5.881 12 S 2.811 3.189 13 O -0.997 6.997 14 O -0.995 6.995 15 C -1.154 5.154 16 H 0.121 0.879 17 C -0.085 4.085 18 N -0.474 5.474 19 Si 0.743 3.257 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.187 1.187 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.236 0.764 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.482 -11.785 5.614 13.137 hybrid contribution -0.494 -0.647 -1.328 1.558 sum -1.976 -12.432 4.285 13.298 Atomic orbital electron populations 1.21784 0.95950 1.01253 1.02144 1.21562 0.95857 0.96983 1.01779 1.21635 0.93553 0.96649 1.03285 1.22825 0.96727 0.96645 0.98843 0.89171 1.23489 0.88063 0.95881 0.95315 1.89105 1.34995 1.19337 1.86182 1.24039 1.00717 0.84332 0.95764 1.21897 0.88310 0.88135 0.99113 0.87650 1.56198 1.23632 1.41086 1.67204 1.00527 0.72913 0.70364 0.75061 1.93377 1.46900 1.70929 1.88458 1.93368 1.45441 1.75219 1.85439 1.30539 1.66379 1.02388 1.16078 0.87943 1.24737 0.88597 0.93478 1.01680 1.69893 1.39818 1.00764 1.36961 0.86178 0.79052 0.79454 0.80968 1.19222 1.19961 1.18650 0.92777 0.92428 0.93093 0.91972 0.92283 0.91709 0.90087 0.92388 0.89442 0.87937 0.91813 0.76386 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.24 5.80 -26.73 -0.15 -1.40 16 3 C -0.11 -1.38 3.33 -26.73 -0.09 -1.47 16 4 C -0.13 -1.71 3.13 -89.05 -0.28 -1.99 16 5 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 6 C 0.05 0.60 6.43 37.94 0.24 0.85 16 7 O -0.38 -5.77 11.65 -35.23 -0.41 -6.18 16 8 C 0.03 0.48 7.36 37.94 0.28 0.76 16 9 C 0.13 2.26 3.64 -66.36 -0.24 2.01 16 10 H 0.11 1.87 7.96 -51.93 -0.41 1.46 16 11 N -1.13 -21.18 4.71 -3.55 -0.02 -21.19 16 12 S 2.71 69.55 4.94 -107.50 -0.53 69.02 16 13 O -1.01 -28.84 18.02 -57.17 -1.03 -29.87 16 14 O -1.00 -28.46 17.78 -57.17 -1.02 -29.48 16 15 C -1.02 -27.25 9.67 30.60 0.30 -26.96 16 16 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 17 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 18 N -0.84 -24.59 13.19 55.43 0.73 -23.86 16 19 Si 0.92 20.28 29.54 -169.99 -5.02 15.26 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.43 8.14 -51.94 -0.42 0.01 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.53 7.56 -51.93 -0.39 0.14 16 28 H 0.06 0.75 7.01 -51.93 -0.36 0.39 16 29 H 0.08 1.12 7.70 -51.93 -0.40 0.72 16 30 H 0.06 0.65 7.79 -51.93 -0.40 0.24 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 34 H 0.40 6.58 6.62 -34.47 -0.23 6.35 16 35 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 301.69 15.07 4.55 4.55 Total: -1.00 -33.78 301.69 -7.55 -41.32 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.13 Total: 6.17 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 0.33 Total: -25.74 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.71 Total: -45.05 kcal Atomic # 8 Polarization: -63.07 SS G_CDS: -2.46 Total: -65.53 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 69.55 SS G_CDS: -0.53 Total: 69.02 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.78 -7.55 -41.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699832207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.639 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds