Wall clock time and date at job start Mon Mar 30 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47288 * 2 1 4 4 C 1.53004 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.45859 * 54.29971 * 4 3 2 6 6 C 1.54482 * 110.62636 * 291.61207 * 4 3 2 7 7 O 1.44427 * 104.80148 * 217.31953 * 6 4 3 8 8 C 1.44424 * 105.27650 * 40.51527 * 7 6 4 9 9 C 1.54483 * 104.80039 * 319.48511 * 8 7 6 10 10 H 1.08999 * 110.51172 * 265.33163 * 9 8 7 11 11 N 1.46505 * 110.62778 * 142.67837 * 9 8 7 12 12 S 1.65601 * 119.99867 * 100.28710 * 11 9 8 13 13 O 1.42094 * 106.40250 * 178.54206 * 12 11 9 14 14 O 1.42099 * 106.40257 * 311.46445 * 12 11 9 15 15 C 1.76205 * 107.21612 * 65.00207 * 12 11 9 16 16 H 1.07995 * 119.99909 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99809 * 180.02562 * 15 12 11 18 18 N 1.31509 * 120.00345 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99724 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47330 * 89.99824 * 19 17 15 21 21 H 1.48505 * 109.47102 * 209.99584 * 19 17 15 22 22 H 1.48498 * 109.47056 * 329.99761 * 19 17 15 23 23 H 1.09006 * 109.46883 * 300.00098 * 1 2 3 24 24 H 1.08994 * 109.46782 * 59.99719 * 1 2 3 25 25 H 1.08989 * 109.47231 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46602 * 239.99488 * 2 1 3 27 27 H 1.09003 * 109.47061 * 120.00255 * 2 1 3 28 28 H 1.08996 * 109.47194 * 60.00158 * 3 2 1 29 29 H 1.08996 * 109.47165 * 299.99421 * 3 2 1 30 30 H 1.08999 * 110.37325 * 336.15462 * 6 4 3 31 31 H 1.09000 * 110.36935 * 98.49059 * 6 4 3 32 32 H 1.08995 * 110.37617 * 200.65774 * 8 7 6 33 33 H 1.08998 * 110.46757 * 78.36346 * 8 7 6 34 34 H 0.97000 * 119.99990 * 280.29541 * 11 9 8 35 35 H 0.97002 * 120.00099 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9507 0.8465 -0.8302 6 6 4.1148 0.9096 1.3432 7 8 5.2843 1.7134 1.6120 8 6 4.9194 3.0567 1.2270 9 6 4.1116 2.8873 -0.0788 10 1 4.7599 3.0059 -0.9471 11 7 3.0063 3.8475 -0.1302 12 16 3.1524 5.2310 -1.0286 13 8 1.9182 5.9237 -0.9022 14 8 4.4050 5.8048 -0.6809 15 6 3.2795 4.7450 -2.7176 16 1 3.2526 3.6982 -2.9817 17 6 3.4134 5.7012 -3.7018 18 7 3.4467 6.9759 -3.3801 19 14 3.5474 5.1860 -5.4924 20 1 2.1900 5.1170 -6.0906 21 1 4.3651 6.1797 -6.2335 22 1 4.1938 3.8517 -5.5764 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6769 1.9563 -0.8900 30 1 3.3742 1.0415 2.1319 31 1 4.3896 -0.1412 1.2514 32 1 5.8121 3.6553 1.0460 33 1 4.3027 3.5197 1.9973 34 1 2.1889 3.6730 0.3621 35 1 3.5405 7.6486 -4.0726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699832207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:14 Heat of formation + Delta-G solvation = -179.674683 kcal Electronic energy + Delta-G solvation = -19044.428501 eV Core-core repulsion = 15974.167356 eV Total energy + Delta-G solvation = -3070.261145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83306 -37.39849 -36.59978 -36.14331 -35.28790 -34.99287 -31.44023 -29.17839 -28.26809 -26.82219 -23.94944 -22.48843 -21.26004 -20.79602 -19.28564 -18.39765 -17.56413 -17.10382 -16.83073 -16.45263 -16.06954 -15.77330 -15.53274 -15.15557 -14.58762 -14.04949 -13.84433 -13.75762 -13.34618 -13.27601 -13.02201 -12.93571 -12.64841 -12.50580 -12.43254 -12.31158 -12.15674 -11.87595 -11.67160 -11.45514 -11.28201 -11.25319 -11.00391 -10.78455 -10.21832 -8.76214 -7.48678 0.33385 1.33937 1.34182 1.50113 2.19723 2.57877 2.81200 3.19282 3.50031 3.72680 3.77426 3.87741 4.12635 4.23455 4.28592 4.38540 4.44099 4.52647 4.62488 4.72886 4.83077 4.86984 4.92486 5.02962 5.11216 5.11701 5.22008 5.30525 5.36452 5.46678 5.54371 5.80427 5.90398 6.34080 6.78314 8.20382 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.007383 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.782134 B = 3791.709117 C = 4316.492618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.115 4.115 4 C -0.121 4.121 5 H 0.102 0.898 6 C 0.049 3.951 7 O -0.388 6.388 8 C 0.032 3.968 9 C 0.121 3.879 10 H 0.090 0.910 11 N -1.107 6.107 12 S 2.719 3.281 13 O -1.044 7.044 14 O -1.040 7.040 15 C -1.038 5.038 16 H 0.122 0.878 17 C 0.070 3.930 18 N -0.894 5.894 19 Si 0.988 3.012 20 H -0.255 1.255 21 H -0.264 1.264 22 H -0.246 1.246 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.416 0.584 35 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 -15.451 4.859 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.153 4.153 4 C -0.142 4.142 5 H 0.120 0.880 6 C -0.028 4.028 7 O -0.306 6.306 8 C -0.047 4.047 9 C 0.013 3.987 10 H 0.108 0.892 11 N -0.867 5.867 12 S 2.819 3.181 13 O -1.035 7.035 14 O -1.030 7.030 15 C -1.171 5.171 16 H 0.140 0.860 17 C -0.143 4.143 18 N -0.526 5.526 19 Si 0.806 3.194 20 H -0.180 1.180 21 H -0.189 1.189 22 H -0.169 1.169 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.253 0.747 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.723 -14.407 5.220 15.421 hybrid contribution -0.426 0.108 -1.107 1.191 sum -2.149 -14.299 4.114 15.034 Atomic orbital electron populations 1.21800 0.95786 1.02046 1.01690 1.21527 0.95963 0.95279 1.02850 1.21646 0.92814 0.98336 1.02546 1.22818 0.97329 0.93843 1.00161 0.88017 1.23724 0.87445 0.96744 0.94846 1.89099 1.36504 1.18867 1.86162 1.23905 1.00136 0.85133 0.95542 1.22135 0.87675 0.89868 0.99032 0.89170 1.55505 1.25005 1.39829 1.66373 0.99946 0.71569 0.71182 0.75365 1.93315 1.48092 1.73048 1.89001 1.93317 1.46736 1.76992 1.85961 1.30889 1.66002 1.03505 1.16706 0.86026 1.25993 0.87723 0.93301 1.07240 1.69989 1.41321 1.02298 1.38988 0.85159 0.79858 0.79903 0.74467 1.17958 1.18870 1.16926 0.92623 0.93570 0.91692 0.91579 0.90494 0.91294 0.92096 0.90915 0.86626 0.89192 0.91252 0.74734 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.91 71.98 0.71 -1.91 16 2 C -0.12 -2.01 5.80 30.60 0.18 -1.84 16 3 C -0.12 -2.57 3.33 30.60 0.10 -2.47 16 4 C -0.12 -2.91 3.13 -9.78 -0.03 -2.94 16 5 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 6 C 0.05 1.03 6.43 72.49 0.47 1.49 16 7 O -0.39 -11.08 11.65 -148.98 -1.74 -12.82 16 8 C 0.03 1.00 7.36 72.49 0.53 1.53 16 9 C 0.12 3.99 3.64 46.01 0.17 4.15 16 10 H 0.09 3.23 7.96 -2.39 -0.02 3.21 16 11 N -1.11 -41.64 4.71 -165.15 -0.78 -42.41 16 12 S 2.72 142.61 4.94 -56.49 -0.28 142.33 16 13 O -1.04 -61.53 18.02 -128.00 -2.31 -63.83 16 14 O -1.04 -60.83 17.78 -128.00 -2.28 -63.11 16 15 C -1.04 -55.65 9.67 67.73 0.66 -54.99 16 16 H 0.12 5.81 7.81 -2.91 -0.02 5.79 16 17 C 0.07 3.86 5.46 84.65 0.46 4.32 16 18 N -0.89 -53.07 13.19 21.45 0.28 -52.79 16 19 Si 0.99 40.69 29.54 68.60 2.03 42.71 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 22 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 23 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.05 7.56 -2.39 -0.02 1.04 16 28 H 0.07 1.46 7.01 -2.39 -0.02 1.44 16 29 H 0.06 1.61 7.70 -2.39 -0.02 1.59 16 30 H 0.07 1.35 7.79 -2.39 -0.02 1.33 16 31 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 34 H 0.42 13.44 6.62 -96.74 -0.64 12.80 16 35 H 0.30 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -73.59 301.69 -1.38 -74.97 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.44 Total: 27.59 kcal Atomic # 6 Polarization: -55.90 SS G_CDS: 3.25 Total: -52.65 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -0.49 Total: -95.20 kcal Atomic # 8 Polarization: -133.44 SS G_CDS: -6.32 Total: -139.76 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 142.61 SS G_CDS: -0.28 Total: 142.33 kcal Total: -73.59 -1.38 -74.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699832207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.705 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds