Wall clock time and date at job start Mon Mar 30 2020 04:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.42069 * 2 1 4 4 O 1.44789 * 110.48934 * 122.44895 * 2 1 3 5 5 C 1.44422 * 105.29550 * 159.32506 * 4 2 1 6 6 H 1.09001 * 110.46714 * 78.33555 * 5 4 2 7 7 C 1.53004 * 110.37236 * 200.62367 * 5 4 2 8 8 C 1.54481 * 104.80332 * 319.45421 * 5 4 2 9 9 H 1.09006 * 110.50719 * 142.62858 * 8 5 4 10 10 C 1.52997 * 110.51227 * 265.33166 * 8 5 4 11 11 C 1.54476 * 110.37180 * 237.68723 * 2 1 3 12 12 H 1.09001 * 110.51285 * 98.40902 * 11 2 1 13 13 N 1.46496 * 110.51213 * 335.83063 * 11 2 1 14 14 S 1.65604 * 119.99532 * 124.52000 * 13 11 2 15 15 O 1.42097 * 106.40464 * 309.91967 * 14 13 11 16 16 O 1.42105 * 106.39997 * 176.99748 * 14 13 11 17 17 C 1.76197 * 107.22036 * 63.46274 * 14 13 11 18 18 H 1.08002 * 119.99895 * 0.26718 * 17 14 13 19 19 C 1.37875 * 120.00458 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99405 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00163 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46907 * 60.00530 * 21 19 17 23 23 H 1.48504 * 109.46969 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47253 * 299.99978 * 21 19 17 25 25 H 1.09004 * 109.47457 * 187.85246 * 1 2 3 26 26 H 1.09002 * 109.47156 * 307.85178 * 1 2 3 27 27 H 1.09002 * 109.47167 * 67.85090 * 1 2 3 28 28 H 1.08995 * 109.47379 * 175.37659 * 7 5 4 29 29 H 1.08997 * 109.47380 * 295.38400 * 7 5 4 30 30 H 1.09005 * 109.46803 * 55.38579 * 7 5 4 31 31 H 1.09004 * 109.47194 * 174.64239 * 10 8 5 32 32 H 1.09003 * 109.47416 * 294.64424 * 10 8 5 33 33 H 1.09003 * 109.47097 * 54.64759 * 10 8 5 34 34 H 0.96999 * 120.00437 * 304.52338 * 13 11 2 35 35 H 0.97001 * 119.99587 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0368 -0.7277 1.1445 5 6 3.3910 -1.0895 0.7968 6 1 4.0572 -0.2356 0.9200 7 6 3.8663 -2.2628 1.6562 8 6 3.3192 -1.5056 -0.6892 9 1 4.2113 -1.1756 -1.2217 10 6 3.1487 -3.0209 -0.8139 11 6 2.0677 -0.7741 -1.2239 12 1 2.3406 -0.0842 -2.0224 13 7 1.0729 -1.7390 -1.6986 14 16 0.5657 -1.6978 -3.2745 15 8 0.2076 -0.3497 -3.5457 16 8 -0.3316 -2.7879 -3.4359 17 6 1.9663 -2.0530 -4.2827 18 1 2.9250 -2.2490 -3.8256 19 6 1.8373 -2.0868 -5.6550 20 7 0.6685 -1.8544 -6.2114 21 14 3.3224 -2.4628 -6.7238 22 1 3.8521 -3.8069 -6.3802 23 1 2.9218 -2.4399 -8.1536 24 1 4.3738 -1.4411 -6.4875 25 1 -0.3634 -1.0180 0.1404 26 1 -0.3633 0.6306 0.8115 27 1 -0.3633 0.3875 -0.9518 28 1 4.8568 -2.5766 1.3269 29 1 3.9115 -1.9535 2.7004 30 1 3.1690 -3.0943 1.5533 31 1 3.0048 -3.2854 -1.8615 32 1 4.0399 -3.5195 -0.4324 33 1 2.2800 -3.3376 -0.2366 34 1 0.7112 -2.4021 -1.0899 35 1 0.5776 -1.8785 -7.1768 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701200906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:31 Heat of formation + Delta-G solvation = -143.321257 kcal Electronic energy + Delta-G solvation = -19586.584261 eV Core-core repulsion = 16517.899519 eV Total energy + Delta-G solvation = -3068.684742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.90918 -35.23383 -34.48960 -33.96091 -33.55164 -33.06976 -29.74829 -28.69924 -26.60138 -26.13815 -23.19067 -20.68144 -19.52905 -19.15426 -17.64383 -16.69041 -15.91788 -15.80616 -15.06431 -14.78531 -14.48559 -13.95314 -13.70614 -13.53392 -13.22407 -12.52694 -12.20975 -12.04512 -11.91816 -11.67925 -11.59910 -11.22783 -11.21491 -11.03181 -10.73798 -10.64465 -10.63164 -10.38949 -10.28965 -10.19465 -10.10411 -9.63782 -9.25686 -8.97019 -8.48154 -6.71834 -5.33937 2.33285 3.06196 3.11302 3.16310 3.99324 4.03938 4.61525 4.65341 4.80217 4.95141 5.10028 5.16882 5.40350 5.43234 5.59532 5.64601 5.67849 5.77115 5.83360 5.89720 5.99630 6.09011 6.16493 6.22648 6.25836 6.39042 6.52087 6.55119 6.64338 6.83780 7.16201 7.31332 7.89575 7.96860 8.87330 10.22385 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.025424 B = 0.008047 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.047934 B = 3478.642102 C = 4120.996822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 H 0.073 0.927 4 O -0.371 6.371 5 C 0.073 3.927 6 H 0.064 0.936 7 C -0.145 4.145 8 C -0.135 4.135 9 H 0.087 0.913 10 C -0.137 4.137 11 C 0.138 3.862 12 H 0.107 0.893 13 N -1.120 6.120 14 S 2.713 3.287 15 O -1.007 7.007 16 O -1.007 7.007 17 C -1.020 5.020 18 H 0.103 0.897 19 C 0.134 3.866 20 N -0.845 5.845 21 Si 0.919 3.081 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.264 1.264 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.404 0.596 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 1.050 11.093 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.003 3.997 3 H 0.091 0.909 4 O -0.291 6.291 5 C 0.015 3.985 6 H 0.082 0.918 7 C -0.202 4.202 8 C -0.156 4.156 9 H 0.105 0.895 10 C -0.195 4.195 11 C 0.028 3.972 12 H 0.125 0.875 13 N -0.873 5.873 14 S 2.813 3.187 15 O -0.997 6.997 16 O -0.997 6.997 17 C -1.154 5.154 18 H 0.121 0.879 19 C -0.085 4.085 20 N -0.475 5.475 21 Si 0.743 3.257 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.189 1.189 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.729 1.348 10.730 12.238 hybrid contribution 1.427 -0.528 -0.641 1.651 sum 7.155 0.820 10.089 12.396 Atomic orbital electron populations 1.21729 0.92843 1.02739 1.02656 1.23397 0.96053 0.95006 0.85199 0.90891 1.89171 1.26805 1.74577 1.38552 1.22958 0.84934 0.96795 0.93834 0.91773 1.21852 1.01251 0.97930 0.99180 1.22923 0.99035 0.97997 0.95612 0.89465 1.21768 1.00898 0.93528 1.03270 1.21885 0.87587 0.90476 0.97206 0.87498 1.56020 1.56047 1.43998 1.31232 1.00479 0.75006 0.73106 0.70131 1.93361 1.84274 1.38779 1.83256 1.93378 1.65769 1.55999 1.84597 1.30549 1.16394 1.64398 1.04033 0.87890 1.24732 0.97188 0.89054 0.97477 1.69891 1.23795 1.39568 1.14245 0.86228 0.81384 0.79849 0.78263 1.18893 1.20160 1.18884 0.91750 0.92689 0.90077 0.91375 0.92617 0.91277 0.91037 0.93028 0.92364 0.76363 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.78 37.16 0.33 -1.86 16 2 C 0.06 0.95 3.91 -25.96 -0.10 0.85 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 O -0.37 -5.53 11.06 -35.23 -0.39 -5.92 16 5 C 0.07 0.92 3.84 -25.95 -0.10 0.82 16 6 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.15 -1.56 8.42 37.16 0.31 -1.25 16 8 C -0.14 -1.90 3.63 -89.05 -0.32 -2.22 16 9 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 10 C -0.14 -1.95 6.90 37.16 0.26 -1.69 16 11 C 0.14 2.31 3.59 -66.36 -0.24 2.07 16 12 H 0.11 1.87 7.76 -51.93 -0.40 1.47 16 13 N -1.12 -21.39 2.85 -3.56 -0.01 -21.40 16 14 S 2.71 69.44 4.90 -107.50 -0.53 68.92 16 15 O -1.01 -28.27 17.66 -57.17 -1.01 -29.28 16 16 O -1.01 -29.04 18.02 -57.17 -1.03 -30.07 16 17 C -1.02 -27.01 9.69 30.60 0.30 -26.71 16 18 H 0.10 2.46 7.14 -52.49 -0.37 2.08 16 19 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16 20 N -0.85 -24.57 13.19 55.43 0.73 -23.83 16 21 Si 0.92 20.18 29.54 -169.99 -5.02 15.16 16 22 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 25 H 0.06 0.99 7.27 -51.93 -0.38 0.61 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.07 0.63 7.78 -51.93 -0.40 0.22 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.78 6.58 -51.93 -0.34 0.44 16 31 H 0.07 1.17 7.19 -51.93 -0.37 0.80 16 32 H 0.05 0.61 7.05 -51.93 -0.37 0.25 16 33 H 0.06 0.81 6.48 -51.93 -0.34 0.48 16 34 H 0.40 7.01 7.16 -34.47 -0.25 6.76 16 35 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 294.31 15.07 4.44 4.44 Total: -1.00 -33.53 294.31 -7.38 -40.91 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.89 Total: 7.52 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 0.33 Total: -26.45 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.72 Total: -45.23 kcal Atomic # 8 Polarization: -62.84 SS G_CDS: -2.43 Total: -65.27 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 69.44 SS G_CDS: -0.53 Total: 68.92 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.53 -7.38 -40.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701200906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.409 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds