Wall clock time and date at job start Mon Mar 30 2020 04:54:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09003 * 110.42069 * 2 1
4 4 O 1.44789 * 110.48934 * 122.44895 * 2 1 3
5 5 C 1.44422 * 105.29550 * 159.32506 * 4 2 1
6 6 H 1.09001 * 110.46714 * 78.33555 * 5 4 2
7 7 C 1.53004 * 110.37236 * 200.62367 * 5 4 2
8 8 C 1.54481 * 104.80332 * 319.45421 * 5 4 2
9 9 H 1.09006 * 110.50719 * 142.62858 * 8 5 4
10 10 C 1.52997 * 110.51227 * 265.33166 * 8 5 4
11 11 C 1.54476 * 110.37180 * 237.68723 * 2 1 3
12 12 H 1.09001 * 110.51285 * 98.40902 * 11 2 1
13 13 N 1.46496 * 110.51213 * 335.83063 * 11 2 1
14 14 S 1.65604 * 119.99532 * 124.52000 * 13 11 2
15 15 O 1.42097 * 106.40464 * 309.91967 * 14 13 11
16 16 O 1.42105 * 106.39997 * 176.99748 * 14 13 11
17 17 C 1.76197 * 107.22036 * 63.46274 * 14 13 11
18 18 H 1.08002 * 119.99895 * 0.26718 * 17 14 13
19 19 C 1.37875 * 120.00458 * 179.97438 * 17 14 13
20 20 N 1.31515 * 119.99405 * 359.97438 * 19 17 14
21 21 Si 1.86798 * 120.00163 * 179.97438 * 19 17 14
22 22 H 1.48502 * 109.46907 * 60.00530 * 21 19 17
23 23 H 1.48504 * 109.46969 * 179.97438 * 21 19 17
24 24 H 1.48493 * 109.47253 * 299.99978 * 21 19 17
25 25 H 1.09004 * 109.47457 * 187.85246 * 1 2 3
26 26 H 1.09002 * 109.47156 * 307.85178 * 1 2 3
27 27 H 1.09002 * 109.47167 * 67.85090 * 1 2 3
28 28 H 1.08995 * 109.47379 * 175.37659 * 7 5 4
29 29 H 1.08997 * 109.47380 * 295.38400 * 7 5 4
30 30 H 1.09005 * 109.46803 * 55.38579 * 7 5 4
31 31 H 1.09004 * 109.47194 * 174.64239 * 10 8 5
32 32 H 1.09003 * 109.47416 * 294.64424 * 10 8 5
33 33 H 1.09003 * 109.47097 * 54.64759 * 10 8 5
34 34 H 0.96999 * 120.00437 * 304.52338 * 13 11 2
35 35 H 0.97001 * 119.99587 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9103 1.0215 0.0000
4 8 2.0368 -0.7277 1.1445
5 6 3.3910 -1.0895 0.7968
6 1 4.0572 -0.2356 0.9200
7 6 3.8663 -2.2628 1.6562
8 6 3.3192 -1.5056 -0.6892
9 1 4.2113 -1.1756 -1.2217
10 6 3.1487 -3.0209 -0.8139
11 6 2.0677 -0.7741 -1.2239
12 1 2.3406 -0.0842 -2.0224
13 7 1.0729 -1.7390 -1.6986
14 16 0.5657 -1.6978 -3.2745
15 8 0.2076 -0.3497 -3.5457
16 8 -0.3316 -2.7879 -3.4359
17 6 1.9663 -2.0530 -4.2827
18 1 2.9250 -2.2490 -3.8256
19 6 1.8373 -2.0868 -5.6550
20 7 0.6685 -1.8544 -6.2114
21 14 3.3224 -2.4628 -6.7238
22 1 3.8521 -3.8069 -6.3802
23 1 2.9218 -2.4399 -8.1536
24 1 4.3738 -1.4411 -6.4875
25 1 -0.3634 -1.0180 0.1404
26 1 -0.3633 0.6306 0.8115
27 1 -0.3633 0.3875 -0.9518
28 1 4.8568 -2.5766 1.3269
29 1 3.9115 -1.9535 2.7004
30 1 3.1690 -3.0943 1.5533
31 1 3.0048 -3.2854 -1.8615
32 1 4.0399 -3.5195 -0.4324
33 1 2.2800 -3.3376 -0.2366
34 1 0.7112 -2.4021 -1.0899
35 1 0.5776 -1.8785 -7.1768
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701200906.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:54:31
Heat of formation + Delta-G solvation = -143.321257 kcal
Electronic energy + Delta-G solvation = -19586.584261 eV
Core-core repulsion = 16517.899519 eV
Total energy + Delta-G solvation = -3068.684742 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-39.90918 -35.23383 -34.48960 -33.96091 -33.55164 -33.06976 -29.74829 -28.69924
-26.60138 -26.13815 -23.19067 -20.68144 -19.52905 -19.15426 -17.64383 -16.69041
-15.91788 -15.80616 -15.06431 -14.78531 -14.48559 -13.95314 -13.70614 -13.53392
-13.22407 -12.52694 -12.20975 -12.04512 -11.91816 -11.67925 -11.59910 -11.22783
-11.21491 -11.03181 -10.73798 -10.64465 -10.63164 -10.38949 -10.28965 -10.19465
-10.10411 -9.63782 -9.25686 -8.97019 -8.48154 -6.71834 -5.33937 2.33285
3.06196 3.11302 3.16310 3.99324 4.03938 4.61525 4.65341 4.80217
4.95141 5.10028 5.16882 5.40350 5.43234 5.59532 5.64601 5.67849
5.77115 5.83360 5.89720 5.99630 6.09011 6.16493 6.22648 6.25836
6.39042 6.52087 6.55119 6.64338 6.83780 7.16201 7.31332 7.89575
7.96860 8.87330 10.22385
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.025424 B = 0.008047 C = 0.006793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1101.047934 B = 3478.642102 C = 4120.996822
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.063 3.937
3 H 0.073 0.927
4 O -0.371 6.371
5 C 0.073 3.927
6 H 0.064 0.936
7 C -0.145 4.145
8 C -0.135 4.135
9 H 0.087 0.913
10 C -0.137 4.137
11 C 0.138 3.862
12 H 0.107 0.893
13 N -1.120 6.120
14 S 2.713 3.287
15 O -1.007 7.007
16 O -1.007 7.007
17 C -1.020 5.020
18 H 0.103 0.897
19 C 0.134 3.866
20 N -0.845 5.845
21 Si 0.919 3.081
22 H -0.264 1.264
23 H -0.277 1.277
24 H -0.264 1.264
25 H 0.063 0.937
26 H 0.054 0.946
27 H 0.080 0.920
28 H 0.067 0.933
29 H 0.055 0.945
30 H 0.068 0.932
31 H 0.071 0.929
32 H 0.051 0.949
33 H 0.057 0.943
34 H 0.404 0.596
35 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.818 1.050 11.093 13.063
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.003 3.997
3 H 0.091 0.909
4 O -0.291 6.291
5 C 0.015 3.985
6 H 0.082 0.918
7 C -0.202 4.202
8 C -0.156 4.156
9 H 0.105 0.895
10 C -0.195 4.195
11 C 0.028 3.972
12 H 0.125 0.875
13 N -0.873 5.873
14 S 2.813 3.187
15 O -0.997 6.997
16 O -0.997 6.997
17 C -1.154 5.154
18 H 0.121 0.879
19 C -0.085 4.085
20 N -0.475 5.475
21 Si 0.743 3.257
22 H -0.189 1.189
23 H -0.202 1.202
24 H -0.189 1.189
25 H 0.082 0.918
26 H 0.073 0.927
27 H 0.099 0.901
28 H 0.086 0.914
29 H 0.074 0.926
30 H 0.087 0.913
31 H 0.090 0.910
32 H 0.070 0.930
33 H 0.076 0.924
34 H 0.236 0.764
35 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 5.729 1.348 10.730 12.238
hybrid contribution 1.427 -0.528 -0.641 1.651
sum 7.155 0.820 10.089 12.396
Atomic orbital electron populations
1.21729 0.92843 1.02739 1.02656 1.23397 0.96053 0.95006 0.85199
0.90891 1.89171 1.26805 1.74577 1.38552 1.22958 0.84934 0.96795
0.93834 0.91773 1.21852 1.01251 0.97930 0.99180 1.22923 0.99035
0.97997 0.95612 0.89465 1.21768 1.00898 0.93528 1.03270 1.21885
0.87587 0.90476 0.97206 0.87498 1.56020 1.56047 1.43998 1.31232
1.00479 0.75006 0.73106 0.70131 1.93361 1.84274 1.38779 1.83256
1.93378 1.65769 1.55999 1.84597 1.30549 1.16394 1.64398 1.04033
0.87890 1.24732 0.97188 0.89054 0.97477 1.69891 1.23795 1.39568
1.14245 0.86228 0.81384 0.79849 0.78263 1.18893 1.20160 1.18884
0.91750 0.92689 0.90077 0.91375 0.92617 0.91277 0.91037 0.93028
0.92364 0.76363 0.89845
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.18 8.78 37.16 0.33 -1.86 16
2 C 0.06 0.95 3.91 -25.96 -0.10 0.85 16
3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
4 O -0.37 -5.53 11.06 -35.23 -0.39 -5.92 16
5 C 0.07 0.92 3.84 -25.95 -0.10 0.82 16
6 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
7 C -0.15 -1.56 8.42 37.16 0.31 -1.25 16
8 C -0.14 -1.90 3.63 -89.05 -0.32 -2.22 16
9 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16
10 C -0.14 -1.95 6.90 37.16 0.26 -1.69 16
11 C 0.14 2.31 3.59 -66.36 -0.24 2.07 16
12 H 0.11 1.87 7.76 -51.93 -0.40 1.47 16
13 N -1.12 -21.39 2.85 -3.56 -0.01 -21.40 16
14 S 2.71 69.44 4.90 -107.50 -0.53 68.92 16
15 O -1.01 -28.27 17.66 -57.17 -1.01 -29.28 16
16 O -1.01 -29.04 18.02 -57.17 -1.03 -30.07 16
17 C -1.02 -27.01 9.69 30.60 0.30 -26.71 16
18 H 0.10 2.46 7.14 -52.49 -0.37 2.08 16
19 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16
20 N -0.85 -24.57 13.19 55.43 0.73 -23.83 16
21 Si 0.92 20.18 29.54 -169.99 -5.02 15.16 16
22 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16
23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16
24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16
25 H 0.06 0.99 7.27 -51.93 -0.38 0.61 16
26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
27 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16
28 H 0.07 0.63 7.78 -51.93 -0.40 0.22 16
29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.07 0.78 6.58 -51.93 -0.34 0.44 16
31 H 0.07 1.17 7.19 -51.93 -0.37 0.80 16
32 H 0.05 0.61 7.05 -51.93 -0.37 0.25 16
33 H 0.06 0.81 6.48 -51.93 -0.34 0.48 16
34 H 0.40 7.01 7.16 -34.47 -0.25 6.76 16
35 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16
LS Contribution 294.31 15.07 4.44 4.44
Total: -1.00 -33.53 294.31 -7.38 -40.91
By element:
Atomic # 1 Polarization: 12.42 SS G_CDS: -4.89 Total: 7.52 kcal
Atomic # 6 Polarization: -26.78 SS G_CDS: 0.33 Total: -26.45 kcal
Atomic # 7 Polarization: -45.95 SS G_CDS: 0.72 Total: -45.23 kcal
Atomic # 8 Polarization: -62.84 SS G_CDS: -2.43 Total: -65.27 kcal
Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal
Atomic # 16 Polarization: 69.44 SS G_CDS: -0.53 Total: 68.92 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -33.53 -7.38 -40.91 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701200906.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -102.409 kcal
(2) G-P(sol) polarization free energy of solvation -33.529 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.938 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal
(6) G-S(sol) free energy of system = (1) + (5) -143.321 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds