Wall clock time and date at job start Mon Mar 30 2020 04:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.42069 * 2 1 4 4 O 1.44789 * 110.48934 * 122.44895 * 2 1 3 5 5 C 1.44422 * 105.29550 * 159.32506 * 4 2 1 6 6 H 1.09001 * 110.46714 * 78.33555 * 5 4 2 7 7 C 1.53004 * 110.37236 * 200.62367 * 5 4 2 8 8 C 1.54481 * 104.80332 * 319.45421 * 5 4 2 9 9 H 1.09006 * 110.50719 * 142.62858 * 8 5 4 10 10 C 1.52997 * 110.51227 * 265.33166 * 8 5 4 11 11 C 1.54476 * 110.37180 * 237.68723 * 2 1 3 12 12 H 1.09001 * 110.51285 * 98.40902 * 11 2 1 13 13 N 1.46496 * 110.51213 * 335.83063 * 11 2 1 14 14 S 1.65604 * 119.99532 * 124.52000 * 13 11 2 15 15 O 1.42097 * 106.40464 * 309.91967 * 14 13 11 16 16 O 1.42105 * 106.39997 * 176.99748 * 14 13 11 17 17 C 1.76197 * 107.22036 * 63.46274 * 14 13 11 18 18 H 1.08002 * 119.99895 * 0.26718 * 17 14 13 19 19 C 1.37875 * 120.00458 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99405 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00163 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46907 * 60.00530 * 21 19 17 23 23 H 1.48504 * 109.46969 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47253 * 299.99978 * 21 19 17 25 25 H 1.09004 * 109.47457 * 187.85246 * 1 2 3 26 26 H 1.09002 * 109.47156 * 307.85178 * 1 2 3 27 27 H 1.09002 * 109.47167 * 67.85090 * 1 2 3 28 28 H 1.08995 * 109.47379 * 175.37659 * 7 5 4 29 29 H 1.08997 * 109.47380 * 295.38400 * 7 5 4 30 30 H 1.09005 * 109.46803 * 55.38579 * 7 5 4 31 31 H 1.09004 * 109.47194 * 174.64239 * 10 8 5 32 32 H 1.09003 * 109.47416 * 294.64424 * 10 8 5 33 33 H 1.09003 * 109.47097 * 54.64759 * 10 8 5 34 34 H 0.96999 * 120.00437 * 304.52338 * 13 11 2 35 35 H 0.97001 * 119.99587 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0368 -0.7277 1.1445 5 6 3.3910 -1.0895 0.7968 6 1 4.0572 -0.2356 0.9200 7 6 3.8663 -2.2628 1.6562 8 6 3.3192 -1.5056 -0.6892 9 1 4.2113 -1.1756 -1.2217 10 6 3.1487 -3.0209 -0.8139 11 6 2.0677 -0.7741 -1.2239 12 1 2.3406 -0.0842 -2.0224 13 7 1.0729 -1.7390 -1.6986 14 16 0.5657 -1.6978 -3.2745 15 8 0.2076 -0.3497 -3.5457 16 8 -0.3316 -2.7879 -3.4359 17 6 1.9663 -2.0530 -4.2827 18 1 2.9250 -2.2490 -3.8256 19 6 1.8373 -2.0868 -5.6550 20 7 0.6685 -1.8544 -6.2114 21 14 3.3224 -2.4628 -6.7238 22 1 3.8521 -3.8069 -6.3802 23 1 2.9218 -2.4399 -8.1536 24 1 4.3738 -1.4411 -6.4875 25 1 -0.3634 -1.0180 0.1404 26 1 -0.3633 0.6306 0.8115 27 1 -0.3633 0.3875 -0.9518 28 1 4.8568 -2.5766 1.3269 29 1 3.9115 -1.9535 2.7004 30 1 3.1690 -3.0943 1.5533 31 1 3.0048 -3.2854 -1.8615 32 1 4.0399 -3.5195 -0.4324 33 1 2.2800 -3.3376 -0.2366 34 1 0.7112 -2.4021 -1.0899 35 1 0.5776 -1.8785 -7.1768 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701200906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:30 Heat of formation + Delta-G solvation = -169.652874 kcal Electronic energy + Delta-G solvation = -19587.726085 eV Core-core repulsion = 16517.899519 eV Total energy + Delta-G solvation = -3069.826567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.08030 -37.37577 -36.11951 -35.87066 -35.17236 -34.60335 -31.11810 -29.73334 -28.22310 -27.80330 -24.27879 -21.94596 -21.13950 -20.60269 -19.44104 -18.47399 -17.49173 -17.20885 -16.75765 -16.13360 -15.95227 -15.70794 -15.35077 -14.76455 -14.58169 -13.97238 -13.66851 -13.37447 -13.21245 -13.08931 -12.99051 -12.83672 -12.56469 -12.49270 -12.47447 -12.39294 -12.32030 -11.96059 -11.91997 -11.64661 -11.35082 -11.22135 -11.00617 -10.71190 -10.04186 -8.73918 -7.46064 0.37711 1.35078 1.36655 1.49361 2.21253 2.60003 2.89150 2.98412 3.60209 3.72031 3.80739 3.99755 4.06288 4.23383 4.38215 4.43912 4.51015 4.60774 4.66616 4.71982 4.75296 4.92879 4.98882 5.06697 5.13647 5.19565 5.26215 5.29926 5.34965 5.41960 5.53509 5.93959 6.04145 6.36775 6.80551 8.22245 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.025424 B = 0.008047 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.047934 B = 3478.642102 C = 4120.996822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.093 0.907 4 O -0.381 6.381 5 C 0.072 3.928 6 H 0.085 0.915 7 C -0.143 4.143 8 C -0.132 4.132 9 H 0.102 0.898 10 C -0.138 4.138 11 C 0.123 3.877 12 H 0.095 0.905 13 N -1.102 6.102 14 S 2.719 3.281 15 O -1.041 7.041 16 O -1.049 7.049 17 C -1.034 5.034 18 H 0.125 0.875 19 C 0.070 3.930 20 N -0.897 5.897 21 Si 0.987 3.013 22 H -0.251 1.251 23 H -0.268 1.268 24 H -0.247 1.247 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.413 0.587 35 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.512 0.915 12.176 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.111 0.889 4 O -0.301 6.301 5 C 0.014 3.986 6 H 0.103 0.897 7 C -0.200 4.200 8 C -0.153 4.153 9 H 0.121 0.879 10 C -0.196 4.196 11 C 0.014 3.986 12 H 0.113 0.887 13 N -0.860 5.860 14 S 2.820 3.180 15 O -1.030 7.030 16 O -1.039 7.039 17 C -1.168 5.168 18 H 0.143 0.857 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.806 3.194 22 H -0.175 1.175 23 H -0.192 1.192 24 H -0.171 1.171 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.248 0.752 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.413 1.214 11.843 14.578 hybrid contribution 0.576 -0.468 -0.871 1.145 sum 8.989 0.746 10.972 14.204 Atomic orbital electron populations 1.21724 0.93543 1.02769 1.02238 1.23355 0.95652 0.95738 0.84529 0.88919 1.89167 1.28170 1.74649 1.38091 1.23169 0.84213 0.98334 0.92842 0.89748 1.21874 1.01982 0.96772 0.99396 1.22953 0.97930 0.97497 0.96893 0.87934 1.21776 1.02172 0.93978 1.01646 1.22201 0.88332 0.90366 0.97678 0.88725 1.55354 1.56738 1.44905 1.28994 0.99920 0.74860 0.71837 0.71342 1.93310 1.84976 1.40157 1.84574 1.93311 1.67500 1.57108 1.85994 1.30879 1.17335 1.63918 1.04639 0.85734 1.25995 1.00526 0.88406 0.99304 1.69999 1.26448 1.41285 1.15079 0.85197 0.77285 0.80533 0.76415 1.17497 1.19218 1.17084 0.92281 0.90519 0.92356 0.89372 0.91763 0.92075 0.93610 0.90276 0.92681 0.75226 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 8.78 71.98 0.63 -3.77 16 2 C 0.07 1.91 3.91 31.09 0.12 2.03 16 3 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 4 O -0.38 -10.42 11.06 -148.98 -1.65 -12.07 16 5 C 0.07 1.59 3.84 31.10 0.12 1.71 16 6 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 7 C -0.14 -2.57 8.42 71.98 0.61 -1.96 16 8 C -0.13 -3.40 3.63 -9.78 -0.04 -3.44 16 9 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 10 C -0.14 -3.65 6.90 71.98 0.50 -3.16 16 11 C 0.12 4.00 3.59 46.01 0.17 4.16 16 12 H 0.09 3.30 7.76 -2.39 -0.02 3.28 16 13 N -1.10 -42.46 2.85 -165.17 -0.47 -42.93 16 14 S 2.72 143.06 4.90 -56.49 -0.28 142.79 16 15 O -1.04 -60.50 17.66 -128.00 -2.26 -62.77 16 16 O -1.05 -62.69 18.02 -128.00 -2.31 -64.99 16 17 C -1.03 -54.93 9.69 67.73 0.66 -54.27 16 18 H 0.12 5.84 7.14 -2.91 -0.02 5.81 16 19 C 0.07 3.84 5.46 84.65 0.46 4.30 16 20 N -0.90 -53.20 13.19 21.45 0.28 -52.91 16 21 Si 0.99 40.36 29.54 68.60 2.03 42.38 16 22 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 24 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 25 H 0.06 1.81 7.27 -2.38 -0.02 1.79 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.09 1.24 7.78 -2.39 -0.02 1.22 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.20 6.58 -2.38 -0.02 1.19 16 31 H 0.04 1.44 7.19 -2.39 -0.02 1.42 16 32 H 0.08 1.63 7.05 -2.39 -0.02 1.62 16 33 H 0.05 1.46 6.48 -2.39 -0.02 1.45 16 34 H 0.41 14.49 7.16 -96.74 -0.69 13.80 16 35 H 0.30 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -73.32 294.31 -1.03 -74.35 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.40 Total: 30.55 kcal Atomic # 6 Polarization: -57.62 SS G_CDS: 3.22 Total: -54.40 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -0.19 Total: -95.84 kcal Atomic # 8 Polarization: -133.61 SS G_CDS: -6.21 Total: -139.83 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 143.06 SS G_CDS: -0.28 Total: 142.79 kcal Total: -73.32 -1.03 -74.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701200906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.306 kcal (2) G-P(sol) polarization free energy of solvation -73.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds