Wall clock time and date at job start Mon Mar 30 2020 04:54:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09003 * 110.42069 * 2 1
4 4 O 1.44789 * 110.48934 * 122.44895 * 2 1 3
5 5 C 1.44422 * 105.29550 * 159.32506 * 4 2 1
6 6 H 1.09001 * 110.46714 * 78.33555 * 5 4 2
7 7 C 1.53004 * 110.37236 * 200.62367 * 5 4 2
8 8 C 1.54481 * 104.80332 * 319.45421 * 5 4 2
9 9 H 1.09006 * 110.50719 * 142.62858 * 8 5 4
10 10 C 1.52997 * 110.51227 * 265.33166 * 8 5 4
11 11 C 1.54476 * 110.37180 * 237.68723 * 2 1 3
12 12 H 1.09001 * 110.51285 * 98.40902 * 11 2 1
13 13 N 1.46496 * 110.51213 * 335.83063 * 11 2 1
14 14 S 1.65604 * 119.99532 * 124.52000 * 13 11 2
15 15 O 1.42097 * 106.40464 * 309.91967 * 14 13 11
16 16 O 1.42105 * 106.39997 * 176.99748 * 14 13 11
17 17 C 1.76197 * 107.22036 * 63.46274 * 14 13 11
18 18 H 1.08002 * 119.99895 * 0.26718 * 17 14 13
19 19 C 1.37875 * 120.00458 * 179.97438 * 17 14 13
20 20 N 1.31515 * 119.99405 * 359.97438 * 19 17 14
21 21 Si 1.86798 * 120.00163 * 179.97438 * 19 17 14
22 22 H 1.48502 * 109.46907 * 60.00530 * 21 19 17
23 23 H 1.48504 * 109.46969 * 179.97438 * 21 19 17
24 24 H 1.48493 * 109.47253 * 299.99978 * 21 19 17
25 25 H 1.09004 * 109.47457 * 187.85246 * 1 2 3
26 26 H 1.09002 * 109.47156 * 307.85178 * 1 2 3
27 27 H 1.09002 * 109.47167 * 67.85090 * 1 2 3
28 28 H 1.08995 * 109.47379 * 175.37659 * 7 5 4
29 29 H 1.08997 * 109.47380 * 295.38400 * 7 5 4
30 30 H 1.09005 * 109.46803 * 55.38579 * 7 5 4
31 31 H 1.09004 * 109.47194 * 174.64239 * 10 8 5
32 32 H 1.09003 * 109.47416 * 294.64424 * 10 8 5
33 33 H 1.09003 * 109.47097 * 54.64759 * 10 8 5
34 34 H 0.96999 * 120.00437 * 304.52338 * 13 11 2
35 35 H 0.97001 * 119.99587 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9103 1.0215 0.0000
4 8 2.0368 -0.7277 1.1445
5 6 3.3910 -1.0895 0.7968
6 1 4.0572 -0.2356 0.9200
7 6 3.8663 -2.2628 1.6562
8 6 3.3192 -1.5056 -0.6892
9 1 4.2113 -1.1756 -1.2217
10 6 3.1487 -3.0209 -0.8139
11 6 2.0677 -0.7741 -1.2239
12 1 2.3406 -0.0842 -2.0224
13 7 1.0729 -1.7390 -1.6986
14 16 0.5657 -1.6978 -3.2745
15 8 0.2076 -0.3497 -3.5457
16 8 -0.3316 -2.7879 -3.4359
17 6 1.9663 -2.0530 -4.2827
18 1 2.9250 -2.2490 -3.8256
19 6 1.8373 -2.0868 -5.6550
20 7 0.6685 -1.8544 -6.2114
21 14 3.3224 -2.4628 -6.7238
22 1 3.8521 -3.8069 -6.3802
23 1 2.9218 -2.4399 -8.1536
24 1 4.3738 -1.4411 -6.4875
25 1 -0.3634 -1.0180 0.1404
26 1 -0.3633 0.6306 0.8115
27 1 -0.3633 0.3875 -0.9518
28 1 4.8568 -2.5766 1.3269
29 1 3.9115 -1.9535 2.7004
30 1 3.1690 -3.0943 1.5533
31 1 3.0048 -3.2854 -1.8615
32 1 4.0399 -3.5195 -0.4324
33 1 2.2800 -3.3376 -0.2366
34 1 0.7112 -2.4021 -1.0899
35 1 0.5776 -1.8785 -7.1768
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701200906.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:54:30
Heat of formation + Delta-G solvation = -169.652874 kcal
Electronic energy + Delta-G solvation = -19587.726085 eV
Core-core repulsion = 16517.899519 eV
Total energy + Delta-G solvation = -3069.826567 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.08030 -37.37577 -36.11951 -35.87066 -35.17236 -34.60335 -31.11810 -29.73334
-28.22310 -27.80330 -24.27879 -21.94596 -21.13950 -20.60269 -19.44104 -18.47399
-17.49173 -17.20885 -16.75765 -16.13360 -15.95227 -15.70794 -15.35077 -14.76455
-14.58169 -13.97238 -13.66851 -13.37447 -13.21245 -13.08931 -12.99051 -12.83672
-12.56469 -12.49270 -12.47447 -12.39294 -12.32030 -11.96059 -11.91997 -11.64661
-11.35082 -11.22135 -11.00617 -10.71190 -10.04186 -8.73918 -7.46064 0.37711
1.35078 1.36655 1.49361 2.21253 2.60003 2.89150 2.98412 3.60209
3.72031 3.80739 3.99755 4.06288 4.23383 4.38215 4.43912 4.51015
4.60774 4.66616 4.71982 4.75296 4.92879 4.98882 5.06697 5.13647
5.19565 5.26215 5.29926 5.34965 5.41960 5.53509 5.93959 6.04145
6.36775 6.80551 8.22245
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.025424 B = 0.008047 C = 0.006793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1101.047934 B = 3478.642102 C = 4120.996822
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.067 3.933
3 H 0.093 0.907
4 O -0.381 6.381
5 C 0.072 3.928
6 H 0.085 0.915
7 C -0.143 4.143
8 C -0.132 4.132
9 H 0.102 0.898
10 C -0.138 4.138
11 C 0.123 3.877
12 H 0.095 0.905
13 N -1.102 6.102
14 S 2.719 3.281
15 O -1.041 7.041
16 O -1.049 7.049
17 C -1.034 5.034
18 H 0.125 0.875
19 C 0.070 3.930
20 N -0.897 5.897
21 Si 0.987 3.013
22 H -0.251 1.251
23 H -0.268 1.268
24 H -0.247 1.247
25 H 0.058 0.942
26 H 0.076 0.924
27 H 0.057 0.943
28 H 0.088 0.912
29 H 0.063 0.937
30 H 0.060 0.940
31 H 0.045 0.955
32 H 0.078 0.922
33 H 0.054 0.946
34 H 0.413 0.587
35 H 0.298 0.702
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.512 0.915 12.176 15.478
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.007 3.993
3 H 0.111 0.889
4 O -0.301 6.301
5 C 0.014 3.986
6 H 0.103 0.897
7 C -0.200 4.200
8 C -0.153 4.153
9 H 0.121 0.879
10 C -0.196 4.196
11 C 0.014 3.986
12 H 0.113 0.887
13 N -0.860 5.860
14 S 2.820 3.180
15 O -1.030 7.030
16 O -1.039 7.039
17 C -1.168 5.168
18 H 0.143 0.857
19 C -0.142 4.142
20 N -0.528 5.528
21 Si 0.806 3.194
22 H -0.175 1.175
23 H -0.192 1.192
24 H -0.171 1.171
25 H 0.077 0.923
26 H 0.095 0.905
27 H 0.076 0.924
28 H 0.106 0.894
29 H 0.082 0.918
30 H 0.079 0.921
31 H 0.064 0.936
32 H 0.097 0.903
33 H 0.073 0.927
34 H 0.248 0.752
35 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 8.413 1.214 11.843 14.578
hybrid contribution 0.576 -0.468 -0.871 1.145
sum 8.989 0.746 10.972 14.204
Atomic orbital electron populations
1.21724 0.93543 1.02769 1.02238 1.23355 0.95652 0.95738 0.84529
0.88919 1.89167 1.28170 1.74649 1.38091 1.23169 0.84213 0.98334
0.92842 0.89748 1.21874 1.01982 0.96772 0.99396 1.22953 0.97930
0.97497 0.96893 0.87934 1.21776 1.02172 0.93978 1.01646 1.22201
0.88332 0.90366 0.97678 0.88725 1.55354 1.56738 1.44905 1.28994
0.99920 0.74860 0.71837 0.71342 1.93310 1.84976 1.40157 1.84574
1.93311 1.67500 1.57108 1.85994 1.30879 1.17335 1.63918 1.04639
0.85734 1.25995 1.00526 0.88406 0.99304 1.69999 1.26448 1.41285
1.15079 0.85197 0.77285 0.80533 0.76415 1.17497 1.19218 1.17084
0.92281 0.90519 0.92356 0.89372 0.91763 0.92075 0.93610 0.90276
0.92681 0.75226 0.89230
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.41 8.78 71.98 0.63 -3.77 16
2 C 0.07 1.91 3.91 31.09 0.12 2.03 16
3 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16
4 O -0.38 -10.42 11.06 -148.98 -1.65 -12.07 16
5 C 0.07 1.59 3.84 31.10 0.12 1.71 16
6 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
7 C -0.14 -2.57 8.42 71.98 0.61 -1.96 16
8 C -0.13 -3.40 3.63 -9.78 -0.04 -3.44 16
9 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16
10 C -0.14 -3.65 6.90 71.98 0.50 -3.16 16
11 C 0.12 4.00 3.59 46.01 0.17 4.16 16
12 H 0.09 3.30 7.76 -2.39 -0.02 3.28 16
13 N -1.10 -42.46 2.85 -165.17 -0.47 -42.93 16
14 S 2.72 143.06 4.90 -56.49 -0.28 142.79 16
15 O -1.04 -60.50 17.66 -128.00 -2.26 -62.77 16
16 O -1.05 -62.69 18.02 -128.00 -2.31 -64.99 16
17 C -1.03 -54.93 9.69 67.73 0.66 -54.27 16
18 H 0.12 5.84 7.14 -2.91 -0.02 5.81 16
19 C 0.07 3.84 5.46 84.65 0.46 4.30 16
20 N -0.90 -53.20 13.19 21.45 0.28 -52.91 16
21 Si 0.99 40.36 29.54 68.60 2.03 42.38 16
22 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16
23 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16
24 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16
25 H 0.06 1.81 7.27 -2.38 -0.02 1.79 16
26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16
27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
28 H 0.09 1.24 7.78 -2.39 -0.02 1.22 16
29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
30 H 0.06 1.20 6.58 -2.38 -0.02 1.19 16
31 H 0.04 1.44 7.19 -2.39 -0.02 1.42 16
32 H 0.08 1.63 7.05 -2.39 -0.02 1.62 16
33 H 0.05 1.46 6.48 -2.39 -0.02 1.45 16
34 H 0.41 14.49 7.16 -96.74 -0.69 13.80 16
35 H 0.30 15.95 8.31 -92.71 -0.77 15.18 16
Total: -1.00 -73.32 294.31 -1.03 -74.35
By element:
Atomic # 1 Polarization: 30.15 SS G_CDS: 0.40 Total: 30.55 kcal
Atomic # 6 Polarization: -57.62 SS G_CDS: 3.22 Total: -54.40 kcal
Atomic # 7 Polarization: -95.66 SS G_CDS: -0.19 Total: -95.84 kcal
Atomic # 8 Polarization: -133.61 SS G_CDS: -6.21 Total: -139.83 kcal
Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal
Atomic # 16 Polarization: 143.06 SS G_CDS: -0.28 Total: 142.79 kcal
Total: -73.32 -1.03 -74.35 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701200906.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -95.306 kcal
(2) G-P(sol) polarization free energy of solvation -73.319 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.625 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.347 kcal
(6) G-S(sol) free energy of system = (1) + (5) -169.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds