Wall clock time and date at job start Mon Mar 30 2020 04:54:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08998 * 110.91697 * 2 1
4 4 C 1.55129 * 110.90510 * 124.07965 * 2 1 3
5 5 N 1.47422 * 104.72486 * 155.27624 * 4 2 1
6 6 S 1.65600 * 125.65024 * 155.81791 * 5 4 2
7 7 O 1.42103 * 106.39991 * 156.15029 * 6 5 4
8 8 O 1.42095 * 106.40377 * 23.22813 * 6 5 4
9 9 C 1.76199 * 107.21522 * 269.68634 * 6 5 4
10 10 H 1.08002 * 120.00405 * 0.02562 * 9 6 5
11 11 C 1.37884 * 119.99836 * 179.72073 * 9 6 5
12 12 N 1.31514 * 119.99698 * 0.28505 * 11 9 6
13 13 Si 1.86794 * 119.99837 * 180.27572 * 11 9 6
14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9
15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9
16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9
17 17 C 1.47024 * 108.69828 * 335.54998 * 5 4 2
18 18 C 1.54320 * 107.27404 * 1.28918 * 17 5 4
19 19 C 1.53007 * 110.71765 * 263.82902 * 18 17 5
20 20 C 1.52993 * 110.72186 * 140.55872 * 18 17 5
21 21 O 1.42901 * 109.47600 * 61.44823 * 20 18 17
22 22 H 1.08993 * 109.46989 * 183.89852 * 1 2 3
23 23 H 1.08998 * 109.46705 * 303.90085 * 1 2 3
24 24 H 1.09003 * 109.46588 * 63.89798 * 1 2 3
25 25 H 1.08997 * 110.49890 * 36.42758 * 4 2 1
26 26 H 1.09012 * 110.34108 * 274.03774 * 4 2 1
27 27 H 0.97005 * 119.99651 * 179.97438 * 12 11 9
28 28 H 1.09000 * 109.88119 * 120.70967 * 17 5 4
29 29 H 1.09008 * 109.87935 * 241.86832 * 17 5 4
30 30 H 1.09000 * 109.47127 * 58.54715 * 19 18 17
31 31 H 1.09008 * 109.46687 * 178.54470 * 19 18 17
32 32 H 1.08990 * 109.47121 * 298.54272 * 19 18 17
33 33 H 1.08997 * 109.47422 * 181.45410 * 20 18 17
34 34 H 1.09011 * 109.46806 * 301.45205 * 20 18 17
35 35 H 0.96696 * 114.00436 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9192 1.0181 0.0000
4 6 2.0836 -0.8120 1.2003
5 7 3.4271 -1.2432 0.7733
6 16 4.6810 -1.6347 1.7817
7 8 5.5388 -2.4920 1.0411
8 8 4.0971 -2.0034 3.0236
9 6 5.5918 -0.1561 2.0796
10 1 5.2792 0.7719 1.6240
11 6 6.7001 -0.1824 2.8994
12 7 7.0806 -1.3123 3.4545
13 14 7.6612 1.3866 3.2214
14 1 6.7703 2.3917 3.8550
15 1 8.7999 1.0923 4.1282
16 1 8.1780 1.9231 1.9367
17 6 3.4674 -1.2741 -0.6960
18 6 2.0862 -0.8079 -1.2023
19 6 1.1887 -2.0084 -1.5094
20 6 2.2350 0.0876 -2.4338
21 8 2.8564 -0.6509 -3.4876
22 1 -0.3633 -1.0252 0.0699
23 1 -0.3633 0.5732 0.8530
24 1 -0.3632 0.4522 -0.9229
25 1 1.4524 -1.6782 1.3987
26 1 2.1515 -0.1803 2.0861
27 1 7.8606 -1.3310 4.0310
28 1 4.2426 -0.5998 -1.0599
29 1 3.6650 -2.2894 -1.0401
30 1 1.0717 -2.6139 -0.6106
31 1 0.2115 -1.6563 -1.8401
32 1 1.6434 -2.6101 -2.2962
33 1 1.2509 0.4257 -2.7583
34 1 2.8513 0.9511 -2.1828
35 1 2.9824 -0.1444 -4.3016
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000703738189.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:54:45
Heat of formation + Delta-G solvation = -148.381492 kcal
Electronic energy + Delta-G solvation = -19247.903611 eV
Core-core repulsion = 16178.999441 eV
Total energy + Delta-G solvation = -3068.904170 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.46049 -36.28805 -35.17127 -33.90114 -33.11144 -32.59428 -30.80884 -26.78982
-26.09482 -25.80209 -24.78435 -21.10951 -18.71378 -18.52395 -17.46655 -17.02449
-16.24514 -15.66944 -15.04568 -14.69927 -14.37213 -14.01770 -13.83263 -13.39728
-13.11633 -12.65462 -12.25288 -12.09270 -12.00816 -11.87632 -11.74420 -11.43666
-11.18467 -11.16592 -10.61008 -10.60151 -10.34769 -10.28744 -10.20804 -10.14649
-10.10552 -9.86999 -9.21321 -8.88156 -8.07017 -6.66308 -5.28367 2.29391
3.09650 3.13774 3.19469 4.08118 4.15521 4.55594 4.64064 4.71396
4.93460 5.05596 5.26582 5.32758 5.45386 5.51737 5.56330 5.77463
5.78945 5.85116 5.91902 6.01638 6.06305 6.13183 6.22371 6.31241
6.36238 6.41288 6.50527 6.61124 6.98364 7.36646 7.53997 7.64824
8.01001 8.91745 10.27219
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.025918 B = 0.006850 C = 0.006590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.076266 B = 4086.626335 C = 4247.875187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.096 4.096
3 H 0.085 0.915
4 C 0.133 3.867
5 N -1.023 6.023
6 S 2.729 3.271
7 O -1.001 7.001
8 O -1.002 7.002
9 C -1.020 5.020
10 H 0.101 0.899
11 C 0.132 3.868
12 N -0.847 5.847
13 Si 0.920 3.080
14 H -0.264 1.264
15 H -0.276 1.276
16 H -0.264 1.264
17 C 0.143 3.857
18 C -0.069 4.069
19 C -0.132 4.132
20 C 0.093 3.907
21 O -0.567 6.567
22 H 0.062 0.938
23 H 0.057 0.943
24 H 0.054 0.946
25 H 0.059 0.941
26 H 0.074 0.926
27 H 0.291 0.709
28 H 0.062 0.938
29 H 0.065 0.935
30 H 0.058 0.942
31 H 0.054 0.946
32 H 0.062 0.938
33 H 0.045 0.955
34 H 0.048 0.952
35 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.500 5.419 -10.111 16.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.116 4.116
3 H 0.103 0.897
4 C 0.006 3.994
5 N -0.858 5.858
6 S 2.830 3.170
7 O -0.992 6.992
8 O -0.993 6.993
9 C -1.153 5.153
10 H 0.119 0.881
11 C -0.085 4.085
12 N -0.477 5.477
13 Si 0.744 3.256
14 H -0.189 1.189
15 H -0.201 1.201
16 H -0.189 1.189
17 C 0.017 3.983
18 C -0.070 4.070
19 C -0.189 4.189
20 C 0.014 3.986
21 O -0.372 6.372
22 H 0.081 0.919
23 H 0.076 0.924
24 H 0.073 0.927
25 H 0.078 0.922
26 H 0.093 0.907
27 H 0.102 0.898
28 H 0.080 0.920
29 H 0.083 0.917
30 H 0.077 0.923
31 H 0.073 0.927
32 H 0.081 0.919
33 H 0.063 0.937
34 H 0.067 0.933
35 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -11.152 3.904 -9.140 14.938
hybrid contribution 0.718 1.981 -0.279 2.126
sum -10.434 5.885 -9.419 15.238
Atomic orbital electron populations
1.21778 0.94331 1.02329 1.01506 1.22466 0.95570 0.99340 0.94199
0.89678 1.21859 0.83857 0.97235 0.96423 1.59177 1.25257 1.85539
1.15857 1.00106 0.70593 0.75419 0.70846 1.93357 1.64937 1.67669
1.73195 1.93354 1.78494 1.84583 1.42838 1.30613 1.25833 1.17107
1.41790 0.88099 1.24758 0.94859 0.97997 0.90923 1.69893 1.24867
1.26486 1.26411 0.86207 0.78841 0.81538 0.78982 1.18890 1.20082
1.18892 1.21481 0.95522 1.01158 0.80176 1.21668 0.96246 0.95979
0.93110 1.21771 0.98362 0.96929 1.01811 1.22159 0.95900 0.93316
0.87182 1.86531 1.83213 1.42592 1.24879 0.91928 0.92358 0.92675
0.92246 0.90736 0.89843 0.91990 0.91699 0.92257 0.92661 0.91890
0.93679 0.93327 0.77870
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.44 8.28 37.16 0.31 -1.13 16
2 C -0.10 -1.27 2.97 -88.35 -0.26 -1.54 16
3 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16
4 C 0.13 2.30 6.13 -2.41 -0.01 2.29 16
5 N -1.02 -21.88 3.70 -111.29 -0.41 -22.29 16
6 S 2.73 75.50 5.22 -107.50 -0.56 74.94 16
7 O -1.00 -30.50 17.60 -57.17 -1.01 -31.50 16
8 O -1.00 -30.10 17.60 -57.17 -1.01 -31.10 16
9 C -1.02 -28.87 9.75 30.60 0.30 -28.57 16
10 H 0.10 2.62 7.81 -52.49 -0.41 2.21 16
11 C 0.13 3.78 5.46 -17.82 -0.10 3.68 16
12 N -0.85 -25.46 13.19 55.43 0.73 -24.73 16
13 Si 0.92 20.95 29.54 -169.99 -5.02 15.93 16
14 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16
15 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16
16 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16
17 C 0.14 2.66 5.91 -3.07 -0.02 2.64 16
18 C -0.07 -0.96 0.55 -152.68 -0.08 -1.04 16
19 C -0.13 -1.67 7.06 37.16 0.26 -1.41 16
20 C 0.09 1.06 5.84 37.15 0.22 1.28 16
21 O -0.57 -6.67 12.92 -35.23 -0.46 -7.13 16
22 H 0.06 0.62 6.71 -51.93 -0.35 0.28 16
23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
25 H 0.06 0.97 7.54 -51.93 -0.39 0.58 16
26 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16
27 H 0.29 7.86 8.31 -40.82 -0.34 7.52 16
28 H 0.06 1.17 7.82 -51.93 -0.41 0.76 16
29 H 0.06 1.26 7.84 -51.92 -0.41 0.86 16
30 H 0.06 0.79 7.30 -51.93 -0.38 0.41 16
31 H 0.05 0.58 7.10 -51.92 -0.37 0.21 16
32 H 0.06 0.83 7.87 -51.93 -0.41 0.43 16
33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16
34 H 0.05 0.54 8.13 -51.92 -0.42 0.12 16
35 H 0.38 2.58 9.12 45.56 0.42 2.99 16
LS Contribution 299.19 15.07 4.51 4.51
Total: -1.00 -36.49 299.19 -6.98 -43.47
By element:
Atomic # 1 Polarization: 6.08 SS G_CDS: -4.37 Total: 1.71 kcal
Atomic # 6 Polarization: -24.41 SS G_CDS: 0.61 Total: -23.80 kcal
Atomic # 7 Polarization: -47.34 SS G_CDS: 0.32 Total: -47.02 kcal
Atomic # 8 Polarization: -67.27 SS G_CDS: -2.47 Total: -69.73 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal
Atomic # 16 Polarization: 75.50 SS G_CDS: -0.56 Total: 74.94 kcal
Total LS contribution 4.51 Total: 4.51 kcal
Total: -36.49 -6.98 -43.47 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000703738189.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -104.910 kcal
(2) G-P(sol) polarization free energy of solvation -36.489 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.399 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.471 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.381 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds