Wall clock time and date at job start Mon Mar 30 2020 04:54:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08998 * 110.91697 * 2 1
4 4 C 1.55129 * 110.90510 * 124.07965 * 2 1 3
5 5 N 1.47422 * 104.72486 * 155.27624 * 4 2 1
6 6 S 1.65600 * 125.65024 * 155.81791 * 5 4 2
7 7 O 1.42103 * 106.39991 * 156.15029 * 6 5 4
8 8 O 1.42095 * 106.40377 * 23.22813 * 6 5 4
9 9 C 1.76199 * 107.21522 * 269.68634 * 6 5 4
10 10 H 1.08002 * 120.00405 * 0.02562 * 9 6 5
11 11 C 1.37884 * 119.99836 * 179.72073 * 9 6 5
12 12 N 1.31514 * 119.99698 * 0.28505 * 11 9 6
13 13 Si 1.86794 * 119.99837 * 180.27572 * 11 9 6
14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9
15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9
16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9
17 17 C 1.47024 * 108.69828 * 335.54998 * 5 4 2
18 18 C 1.54320 * 107.27404 * 1.28918 * 17 5 4
19 19 C 1.53007 * 110.71765 * 263.82902 * 18 17 5
20 20 C 1.52993 * 110.72186 * 140.55872 * 18 17 5
21 21 O 1.42901 * 109.47600 * 61.44823 * 20 18 17
22 22 H 1.08993 * 109.46989 * 183.89852 * 1 2 3
23 23 H 1.08998 * 109.46705 * 303.90085 * 1 2 3
24 24 H 1.09003 * 109.46588 * 63.89798 * 1 2 3
25 25 H 1.08997 * 110.49890 * 36.42758 * 4 2 1
26 26 H 1.09012 * 110.34108 * 274.03774 * 4 2 1
27 27 H 0.97005 * 119.99651 * 179.97438 * 12 11 9
28 28 H 1.09000 * 109.88119 * 120.70967 * 17 5 4
29 29 H 1.09008 * 109.87935 * 241.86832 * 17 5 4
30 30 H 1.09000 * 109.47127 * 58.54715 * 19 18 17
31 31 H 1.09008 * 109.46687 * 178.54470 * 19 18 17
32 32 H 1.08990 * 109.47121 * 298.54272 * 19 18 17
33 33 H 1.08997 * 109.47422 * 181.45410 * 20 18 17
34 34 H 1.09011 * 109.46806 * 301.45205 * 20 18 17
35 35 H 0.96696 * 114.00436 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9192 1.0181 0.0000
4 6 2.0836 -0.8120 1.2003
5 7 3.4271 -1.2432 0.7733
6 16 4.6810 -1.6347 1.7817
7 8 5.5388 -2.4920 1.0411
8 8 4.0971 -2.0034 3.0236
9 6 5.5918 -0.1561 2.0796
10 1 5.2792 0.7719 1.6240
11 6 6.7001 -0.1824 2.8994
12 7 7.0806 -1.3123 3.4545
13 14 7.6612 1.3866 3.2214
14 1 6.7703 2.3917 3.8550
15 1 8.7999 1.0923 4.1282
16 1 8.1780 1.9231 1.9367
17 6 3.4674 -1.2741 -0.6960
18 6 2.0862 -0.8079 -1.2023
19 6 1.1887 -2.0084 -1.5094
20 6 2.2350 0.0876 -2.4338
21 8 2.8564 -0.6509 -3.4876
22 1 -0.3633 -1.0252 0.0699
23 1 -0.3633 0.5732 0.8530
24 1 -0.3632 0.4522 -0.9229
25 1 1.4524 -1.6782 1.3987
26 1 2.1515 -0.1803 2.0861
27 1 7.8606 -1.3310 4.0310
28 1 4.2426 -0.5998 -1.0599
29 1 3.6650 -2.2894 -1.0401
30 1 1.0717 -2.6139 -0.6106
31 1 0.2115 -1.6563 -1.8401
32 1 1.6434 -2.6101 -2.2962
33 1 1.2509 0.4257 -2.7583
34 1 2.8513 0.9511 -2.1828
35 1 2.9824 -0.1444 -4.3016
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000703738189.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:54:44
Heat of formation + Delta-G solvation = -179.781116 kcal
Electronic energy + Delta-G solvation = -19249.265201 eV
Core-core repulsion = 16178.999441 eV
Total energy + Delta-G solvation = -3070.265760 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.66131 -37.48082 -37.24262 -36.20062 -35.24162 -33.99023 -31.89772 -28.30752
-27.80097 -26.99007 -26.06467 -22.36225 -20.79731 -19.64550 -19.25214 -18.34418
-17.99697 -17.23787 -16.79356 -16.11557 -15.87018 -15.76322 -15.26099 -14.76432
-14.36264 -14.01027 -13.80924 -13.53740 -13.36477 -13.29670 -13.13159 -13.02500
-12.70537 -12.57882 -12.54480 -12.49053 -12.34405 -11.89279 -11.60972 -11.33432
-11.29645 -11.27061 -11.03538 -10.75372 -9.79319 -8.77888 -7.53513 0.22840
1.30436 1.33562 1.46854 2.17885 2.53626 2.85416 3.23169 3.52933
3.62300 3.75785 4.08761 4.23505 4.28038 4.34414 4.46459 4.57998
4.60217 4.65651 4.72278 4.78864 4.89493 5.02015 5.04892 5.08600
5.17281 5.19546 5.36648 5.38408 5.40364 5.60627 5.80425 5.86696
6.72855 7.04200 8.17531
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.025918 B = 0.006850 C = 0.006590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.076266 B = 4086.626335 C = 4247.875187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.082 4.082
3 H 0.094 0.906
4 C 0.116 3.884
5 N -1.024 6.024
6 S 2.729 3.271
7 O -1.043 7.043
8 O -1.038 7.038
9 C -1.040 5.040
10 H 0.119 0.881
11 C 0.067 3.933
12 N -0.896 5.896
13 Si 0.994 3.006
14 H -0.247 1.247
15 H -0.261 1.261
16 H -0.250 1.250
17 C 0.133 3.867
18 C -0.064 4.064
19 C -0.129 4.129
20 C 0.095 3.905
21 O -0.590 6.590
22 H 0.063 0.937
23 H 0.067 0.933
24 H 0.082 0.918
25 H 0.065 0.935
26 H 0.067 0.933
27 H 0.300 0.700
28 H 0.054 0.946
29 H 0.044 0.956
30 H 0.045 0.955
31 H 0.088 0.912
32 H 0.052 0.948
33 H 0.081 0.919
34 H 0.050 0.950
35 H 0.396 0.604
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.989 8.135 -11.402 19.102
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.102 4.102
3 H 0.112 0.888
4 C -0.009 4.009
5 N -0.863 5.863
6 S 2.833 3.167
7 O -1.034 7.034
8 O -1.029 7.029
9 C -1.174 5.174
10 H 0.137 0.863
11 C -0.145 4.145
12 N -0.527 5.527
13 Si 0.811 3.189
14 H -0.171 1.171
15 H -0.185 1.185
16 H -0.174 1.174
17 C 0.007 3.993
18 C -0.065 4.065
19 C -0.186 4.186
20 C 0.017 3.983
21 O -0.398 6.398
22 H 0.082 0.918
23 H 0.086 0.914
24 H 0.101 0.899
25 H 0.084 0.916
26 H 0.086 0.914
27 H 0.110 0.890
28 H 0.072 0.928
29 H 0.063 0.937
30 H 0.064 0.936
31 H 0.107 0.893
32 H 0.071 0.929
33 H 0.099 0.901
34 H 0.069 0.931
35 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -12.658 6.604 -10.448 17.692
hybrid contribution 1.132 1.071 0.069 1.559
sum -11.527 7.674 -10.379 17.306
Atomic orbital electron populations
1.21785 0.91203 1.03031 1.03446 1.22454 0.97892 0.98641 0.91226
0.88789 1.22274 0.81963 0.98234 0.98445 1.58618 1.25524 1.85423
1.16686 0.99609 0.71028 0.75513 0.70544 1.93289 1.66982 1.69274
1.73845 1.93290 1.79174 1.85345 1.45075 1.30924 1.26477 1.17683
1.42272 0.86317 1.26113 0.95976 1.02264 0.90187 1.69994 1.25982
1.29300 1.27459 0.85124 0.77644 0.76339 0.79810 1.17081 1.18529
1.17370 1.21745 0.98980 1.00144 0.78389 1.21725 0.93090 0.97074
0.94640 1.21762 0.99636 0.96229 1.00959 1.22146 0.97859 0.92230
0.86027 1.86481 1.83479 1.43788 1.26092 0.91765 0.91399 0.89910
0.91648 0.91408 0.88982 0.92805 0.93735 0.93580 0.89333 0.92874
0.90100 0.93136 0.75402
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.22 8.28 71.98 0.60 -1.62 16
2 C -0.08 -1.98 2.97 -9.32 -0.03 -2.01 16
3 H 0.09 2.12 8.04 -2.39 -0.02 2.10 16
4 C 0.12 4.00 6.13 86.93 0.53 4.53 16
5 N -1.02 -44.95 3.70 -506.00 -1.87 -46.82 16
6 S 2.73 157.43 5.22 -56.49 -0.29 157.13 16
7 O -1.04 -66.96 17.60 -128.00 -2.25 -69.21 16
8 O -1.04 -65.23 17.60 -128.00 -2.25 -67.48 16
9 C -1.04 -59.83 9.75 67.74 0.66 -59.17 16
10 H 0.12 6.15 7.81 -2.91 -0.02 6.13 16
11 C 0.07 3.86 5.46 84.66 0.46 4.32 16
12 N -0.90 -55.28 13.19 21.45 0.28 -55.00 16
13 Si 0.99 42.15 29.54 68.60 2.03 44.17 16
14 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16
15 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16
16 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16
17 C 0.13 5.03 5.91 86.73 0.51 5.55 16
18 C -0.06 -1.65 0.55 -50.99 -0.03 -1.68 16
19 C -0.13 -3.01 7.06 71.98 0.51 -2.50 16
20 C 0.10 1.86 5.84 71.98 0.42 2.28 16
21 O -0.59 -12.52 12.92 -148.98 -1.92 -14.44 16
22 H 0.06 1.04 6.71 -2.39 -0.02 1.03 16
23 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16
24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
25 H 0.07 2.14 7.54 -2.39 -0.02 2.12 16
26 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16
27 H 0.30 16.56 8.31 -92.70 -0.77 15.79 16
28 H 0.05 2.08 7.82 -2.39 -0.02 2.06 16
29 H 0.04 1.82 7.84 -2.38 -0.02 1.80 16
30 H 0.05 1.18 7.30 -2.39 -0.02 1.16 16
31 H 0.09 1.48 7.10 -2.38 -0.02 1.47 16
32 H 0.05 1.34 7.87 -2.39 -0.02 1.32 16
33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16
34 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16
35 H 0.40 4.38 9.12 -74.06 -0.68 3.70 16
Total: -1.00 -82.67 299.19 -2.24 -84.91
By element:
Atomic # 1 Polarization: 16.62 SS G_CDS: 0.41 Total: 17.03 kcal
Atomic # 6 Polarization: -53.92 SS G_CDS: 3.64 Total: -50.28 kcal
Atomic # 7 Polarization: -100.23 SS G_CDS: -1.59 Total: -101.81 kcal
Atomic # 8 Polarization: -144.71 SS G_CDS: -6.43 Total: -151.14 kcal
Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal
Atomic # 16 Polarization: 157.43 SS G_CDS: -0.29 Total: 157.13 kcal
Total: -82.67 -2.24 -84.91 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000703738189.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -94.876 kcal
(2) G-P(sol) polarization free energy of solvation -82.667 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.543 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.238 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) -179.781 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds