Wall clock time and date at job start Mon Mar 30 2020 04:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.91697 * 2 1 4 4 C 1.55129 * 110.90510 * 124.07965 * 2 1 3 5 5 N 1.47422 * 104.72486 * 155.27624 * 4 2 1 6 6 S 1.65600 * 125.65024 * 155.81791 * 5 4 2 7 7 O 1.42103 * 106.39991 * 156.15029 * 6 5 4 8 8 O 1.42095 * 106.40377 * 23.22813 * 6 5 4 9 9 C 1.76199 * 107.21522 * 269.68634 * 6 5 4 10 10 H 1.08002 * 120.00405 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99836 * 179.72073 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28505 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27572 * 11 9 6 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.47024 * 108.69828 * 335.54998 * 5 4 2 18 18 C 1.54320 * 107.27404 * 1.28918 * 17 5 4 19 19 C 1.53007 * 110.71765 * 263.82902 * 18 17 5 20 20 C 1.52993 * 110.72186 * 140.55872 * 18 17 5 21 21 O 1.42901 * 109.47600 * 61.44823 * 20 18 17 22 22 H 1.08993 * 109.46989 * 183.89852 * 1 2 3 23 23 H 1.08998 * 109.46705 * 303.90085 * 1 2 3 24 24 H 1.09003 * 109.46588 * 63.89798 * 1 2 3 25 25 H 1.08997 * 110.49890 * 36.42758 * 4 2 1 26 26 H 1.09012 * 110.34108 * 274.03774 * 4 2 1 27 27 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.88119 * 120.70967 * 17 5 4 29 29 H 1.09008 * 109.87935 * 241.86832 * 17 5 4 30 30 H 1.09000 * 109.47127 * 58.54715 * 19 18 17 31 31 H 1.09008 * 109.46687 * 178.54470 * 19 18 17 32 32 H 1.08990 * 109.47121 * 298.54272 * 19 18 17 33 33 H 1.08997 * 109.47422 * 181.45410 * 20 18 17 34 34 H 1.09011 * 109.46806 * 301.45205 * 20 18 17 35 35 H 0.96696 * 114.00436 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0836 -0.8120 1.2003 5 7 3.4271 -1.2432 0.7733 6 16 4.6810 -1.6347 1.7817 7 8 5.5388 -2.4920 1.0411 8 8 4.0971 -2.0034 3.0236 9 6 5.5918 -0.1561 2.0796 10 1 5.2792 0.7719 1.6240 11 6 6.7001 -0.1824 2.8994 12 7 7.0806 -1.3123 3.4545 13 14 7.6612 1.3866 3.2214 14 1 6.7703 2.3917 3.8550 15 1 8.7999 1.0923 4.1282 16 1 8.1780 1.9231 1.9367 17 6 3.4674 -1.2741 -0.6960 18 6 2.0862 -0.8079 -1.2023 19 6 1.1887 -2.0084 -1.5094 20 6 2.2350 0.0876 -2.4338 21 8 2.8564 -0.6509 -3.4876 22 1 -0.3633 -1.0252 0.0699 23 1 -0.3633 0.5732 0.8530 24 1 -0.3632 0.4522 -0.9229 25 1 1.4524 -1.6782 1.3987 26 1 2.1515 -0.1803 2.0861 27 1 7.8606 -1.3310 4.0310 28 1 4.2426 -0.5998 -1.0599 29 1 3.6650 -2.2894 -1.0401 30 1 1.0717 -2.6139 -0.6106 31 1 0.2115 -1.6563 -1.8401 32 1 1.6434 -2.6101 -2.2962 33 1 1.2509 0.4257 -2.7583 34 1 2.8513 0.9511 -2.1828 35 1 2.9824 -0.1444 -4.3016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703738189.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:44 Heat of formation + Delta-G solvation = -179.781116 kcal Electronic energy + Delta-G solvation = -19249.265201 eV Core-core repulsion = 16178.999441 eV Total energy + Delta-G solvation = -3070.265760 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66131 -37.48082 -37.24262 -36.20062 -35.24162 -33.99023 -31.89772 -28.30752 -27.80097 -26.99007 -26.06467 -22.36225 -20.79731 -19.64550 -19.25214 -18.34418 -17.99697 -17.23787 -16.79356 -16.11557 -15.87018 -15.76322 -15.26099 -14.76432 -14.36264 -14.01027 -13.80924 -13.53740 -13.36477 -13.29670 -13.13159 -13.02500 -12.70537 -12.57882 -12.54480 -12.49053 -12.34405 -11.89279 -11.60972 -11.33432 -11.29645 -11.27061 -11.03538 -10.75372 -9.79319 -8.77888 -7.53513 0.22840 1.30436 1.33562 1.46854 2.17885 2.53626 2.85416 3.23169 3.52933 3.62300 3.75785 4.08761 4.23505 4.28038 4.34414 4.46459 4.57998 4.60217 4.65651 4.72278 4.78864 4.89493 5.02015 5.04892 5.08600 5.17281 5.19546 5.36648 5.38408 5.40364 5.60627 5.80425 5.86696 6.72855 7.04200 8.17531 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.025918 B = 0.006850 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.076266 B = 4086.626335 C = 4247.875187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 H 0.094 0.906 4 C 0.116 3.884 5 N -1.024 6.024 6 S 2.729 3.271 7 O -1.043 7.043 8 O -1.038 7.038 9 C -1.040 5.040 10 H 0.119 0.881 11 C 0.067 3.933 12 N -0.896 5.896 13 Si 0.994 3.006 14 H -0.247 1.247 15 H -0.261 1.261 16 H -0.250 1.250 17 C 0.133 3.867 18 C -0.064 4.064 19 C -0.129 4.129 20 C 0.095 3.905 21 O -0.590 6.590 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.300 0.700 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.989 8.135 -11.402 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 H 0.112 0.888 4 C -0.009 4.009 5 N -0.863 5.863 6 S 2.833 3.167 7 O -1.034 7.034 8 O -1.029 7.029 9 C -1.174 5.174 10 H 0.137 0.863 11 C -0.145 4.145 12 N -0.527 5.527 13 Si 0.811 3.189 14 H -0.171 1.171 15 H -0.185 1.185 16 H -0.174 1.174 17 C 0.007 3.993 18 C -0.065 4.065 19 C -0.186 4.186 20 C 0.017 3.983 21 O -0.398 6.398 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.658 6.604 -10.448 17.692 hybrid contribution 1.132 1.071 0.069 1.559 sum -11.527 7.674 -10.379 17.306 Atomic orbital electron populations 1.21785 0.91203 1.03031 1.03446 1.22454 0.97892 0.98641 0.91226 0.88789 1.22274 0.81963 0.98234 0.98445 1.58618 1.25524 1.85423 1.16686 0.99609 0.71028 0.75513 0.70544 1.93289 1.66982 1.69274 1.73845 1.93290 1.79174 1.85345 1.45075 1.30924 1.26477 1.17683 1.42272 0.86317 1.26113 0.95976 1.02264 0.90187 1.69994 1.25982 1.29300 1.27459 0.85124 0.77644 0.76339 0.79810 1.17081 1.18529 1.17370 1.21745 0.98980 1.00144 0.78389 1.21725 0.93090 0.97074 0.94640 1.21762 0.99636 0.96229 1.00959 1.22146 0.97859 0.92230 0.86027 1.86481 1.83479 1.43788 1.26092 0.91765 0.91399 0.89910 0.91648 0.91408 0.88982 0.92805 0.93735 0.93580 0.89333 0.92874 0.90100 0.93136 0.75402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.28 71.98 0.60 -1.62 16 2 C -0.08 -1.98 2.97 -9.32 -0.03 -2.01 16 3 H 0.09 2.12 8.04 -2.39 -0.02 2.10 16 4 C 0.12 4.00 6.13 86.93 0.53 4.53 16 5 N -1.02 -44.95 3.70 -506.00 -1.87 -46.82 16 6 S 2.73 157.43 5.22 -56.49 -0.29 157.13 16 7 O -1.04 -66.96 17.60 -128.00 -2.25 -69.21 16 8 O -1.04 -65.23 17.60 -128.00 -2.25 -67.48 16 9 C -1.04 -59.83 9.75 67.74 0.66 -59.17 16 10 H 0.12 6.15 7.81 -2.91 -0.02 6.13 16 11 C 0.07 3.86 5.46 84.66 0.46 4.32 16 12 N -0.90 -55.28 13.19 21.45 0.28 -55.00 16 13 Si 0.99 42.15 29.54 68.60 2.03 44.17 16 14 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 15 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 16 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 17 C 0.13 5.03 5.91 86.73 0.51 5.55 16 18 C -0.06 -1.65 0.55 -50.99 -0.03 -1.68 16 19 C -0.13 -3.01 7.06 71.98 0.51 -2.50 16 20 C 0.10 1.86 5.84 71.98 0.42 2.28 16 21 O -0.59 -12.52 12.92 -148.98 -1.92 -14.44 16 22 H 0.06 1.04 6.71 -2.39 -0.02 1.03 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 2.14 7.54 -2.39 -0.02 2.12 16 26 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 27 H 0.30 16.56 8.31 -92.70 -0.77 15.79 16 28 H 0.05 2.08 7.82 -2.39 -0.02 2.06 16 29 H 0.04 1.82 7.84 -2.38 -0.02 1.80 16 30 H 0.05 1.18 7.30 -2.39 -0.02 1.16 16 31 H 0.09 1.48 7.10 -2.38 -0.02 1.47 16 32 H 0.05 1.34 7.87 -2.39 -0.02 1.32 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 35 H 0.40 4.38 9.12 -74.06 -0.68 3.70 16 Total: -1.00 -82.67 299.19 -2.24 -84.91 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.41 Total: 17.03 kcal Atomic # 6 Polarization: -53.92 SS G_CDS: 3.64 Total: -50.28 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -1.59 Total: -101.81 kcal Atomic # 8 Polarization: -144.71 SS G_CDS: -6.43 Total: -151.14 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 157.43 SS G_CDS: -0.29 Total: 157.13 kcal Total: -82.67 -2.24 -84.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703738189.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.876 kcal (2) G-P(sol) polarization free energy of solvation -82.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds