Wall clock time and date at job start Mon Mar 30 2020 04:54:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09006 * 110.78152 * 2 1
4 4 C 1.54319 * 110.72660 * 236.75723 * 2 1 3
5 5 N 1.47026 * 107.27342 * 263.83183 * 4 2 1
6 6 S 1.65598 * 125.64936 * 181.01938 * 5 4 2
7 7 O 1.42102 * 106.40242 * 336.48244 * 6 5 4
8 8 O 1.42097 * 106.40010 * 203.56374 * 6 5 4
9 9 C 1.76199 * 107.21820 * 90.02482 * 6 5 4
10 10 H 1.08005 * 119.99978 * 0.02562 * 9 6 5
11 11 C 1.37871 * 119.99882 * 179.97438 * 9 6 5
12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 6
13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 6
14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9
15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9
16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9
17 17 C 1.47430 * 108.69873 * 1.28368 * 5 4 2
18 18 C 1.55119 * 104.72507 * 335.55411 * 17 5 4
19 19 C 1.53002 * 111.19171 * 279.19394 * 18 17 5
20 20 C 1.53001 * 110.94211 * 155.29030 * 18 17 5
21 21 O 1.42900 * 109.47036 * 67.95319 * 20 18 17
22 22 H 1.09005 * 109.47082 * 181.78442 * 1 2 3
23 23 H 1.08999 * 109.47737 * 301.79217 * 1 2 3
24 24 H 1.09008 * 109.46972 * 61.79129 * 1 2 3
25 25 H 1.09001 * 109.88394 * 144.41344 * 4 2 1
26 26 H 1.09001 * 110.00751 * 23.31643 * 4 2 1
27 27 H 0.97001 * 119.99646 * 359.97438 * 12 11 9
28 28 H 1.08998 * 110.36400 * 94.48611 * 17 5 4
29 29 H 1.08998 * 110.36328 * 216.80441 * 17 5 4
30 30 H 1.09008 * 109.47081 * 172.18854 * 19 18 17
31 31 H 1.09006 * 109.46793 * 292.18357 * 19 18 17
32 32 H 1.08999 * 109.47436 * 52.18364 * 19 18 17
33 33 H 1.09003 * 109.47309 * 187.95346 * 20 18 17
34 34 H 1.09000 * 109.46947 * 307.95857 * 20 18 17
35 35 H 0.96700 * 113.99642 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9167 1.0191 0.0000
4 6 2.0761 -0.7912 -1.2071
5 7 2.3717 -2.1532 -0.7388
6 16 3.0025 -3.3753 -1.6611
7 8 2.6849 -3.0643 -3.0108
8 8 2.6194 -4.5909 -1.0328
9 6 4.7567 -3.2774 -1.5275
10 1 5.2099 -2.5089 -0.9188
11 6 5.5508 -4.1825 -2.1991
12 7 4.9990 -5.1187 -2.9399
13 14 7.4105 -4.0783 -2.0579
14 1 8.0297 -5.1575 -2.8686
15 1 7.8716 -2.7576 -2.5563
16 1 7.8087 -4.2375 -0.6362
17 6 2.0075 -2.2524 0.6864
18 6 2.0788 -0.7954 1.2139
19 6 3.5206 -0.3909 1.5280
20 6 1.1818 -0.6132 2.4399
21 8 1.7164 -1.3579 3.5361
22 1 -0.3633 -1.0272 0.0320
23 1 -0.3634 0.5414 0.8734
24 1 -0.3633 0.4858 -0.9057
25 1 2.9869 -0.3207 -1.5774
26 1 1.3284 -0.8258 -1.9995
27 1 4.0333 -5.1725 -3.0134
28 1 0.9974 -2.6479 0.7931
29 1 2.7207 -2.8830 1.2171
30 1 3.5567 0.6731 1.7621
31 1 3.8806 -0.9635 2.3828
32 1 4.1517 -0.5942 0.6628
33 1 1.1389 0.4433 2.7049
34 1 0.1780 -0.9718 2.2122
35 1 1.1975 -1.2882 4.3492
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000703738195.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:54:50
Heat of formation + Delta-G solvation = -150.126700 kcal
Electronic energy + Delta-G solvation = -19425.332845 eV
Core-core repulsion = 16356.352997 eV
Total energy + Delta-G solvation = -3068.979848 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.59228 -36.36409 -35.50078 -34.35336 -33.21425 -32.33755 -31.01097 -27.43881
-25.54999 -25.41499 -24.71345 -21.28204 -19.25855 -18.70870 -17.89605 -17.24876
-16.28564 -15.37884 -15.09353 -14.44563 -14.39397 -14.07461 -13.91848 -13.60462
-13.09861 -12.95939 -12.47714 -12.37613 -12.07452 -11.96106 -11.68033 -11.52148
-11.06572 -10.97503 -10.69053 -10.55146 -10.52808 -10.41033 -10.34796 -10.28219
-10.25906 -9.88317 -9.15672 -8.73753 -8.05811 -7.14669 -5.35388 2.08730
3.25123 3.25865 3.47206 4.06635 4.18460 4.42020 4.56456 4.74789
4.77072 4.97554 5.15860 5.29646 5.30517 5.46091 5.53901 5.61812
5.64606 5.76649 5.87243 5.99964 6.03464 6.06926 6.18763 6.19933
6.25581 6.30170 6.43287 6.59553 6.81244 7.33162 7.59780 7.66081
8.08487 8.65440 10.22537
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.025929 B = 0.007396 C = 0.006691
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1079.604350 B = 3784.837265 C = 4183.479556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.092 4.092
3 H 0.086 0.914
4 C 0.131 3.869
5 N -1.015 6.015
6 S 2.705 3.295
7 O -1.009 7.009
8 O -1.008 7.008
9 C -1.082 5.082
10 H 0.102 0.898
11 C 0.090 3.910
12 N -0.846 5.846
13 Si 1.079 2.921
14 H -0.271 1.271
15 H -0.276 1.276
16 H -0.275 1.275
17 C 0.144 3.856
18 C -0.069 4.069
19 C -0.133 4.133
20 C 0.092 3.908
21 O -0.567 6.567
22 H 0.060 0.940
23 H 0.056 0.944
24 H 0.059 0.941
25 H 0.063 0.937
26 H 0.064 0.936
27 H 0.275 0.725
28 H 0.057 0.943
29 H 0.077 0.923
30 H 0.050 0.950
31 H 0.066 0.934
32 H 0.064 0.936
33 H 0.045 0.955
34 H 0.050 0.950
35 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.499 12.141 10.229 17.154
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.112 4.112
3 H 0.105 0.895
4 C 0.005 3.995
5 N -0.851 5.851
6 S 2.808 3.192
7 O -0.999 6.999
8 O -0.998 6.998
9 C -1.217 5.217
10 H 0.121 0.879
11 C -0.129 4.129
12 N -0.475 5.475
13 Si 0.902 3.098
14 H -0.196 1.196
15 H -0.201 1.201
16 H -0.201 1.201
17 C 0.018 3.982
18 C -0.071 4.071
19 C -0.190 4.190
20 C 0.014 3.986
21 O -0.372 6.372
22 H 0.079 0.921
23 H 0.075 0.925
24 H 0.078 0.922
25 H 0.082 0.918
26 H 0.082 0.918
27 H 0.087 0.913
28 H 0.075 0.925
29 H 0.095 0.905
30 H 0.069 0.931
31 H 0.085 0.915
32 H 0.083 0.917
33 H 0.064 0.936
34 H 0.068 0.932
35 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -5.219 10.585 8.705 14.665
hybrid contribution -1.372 1.235 1.151 2.175
sum -6.591 11.820 9.857 16.742
Atomic orbital electron populations
1.21891 0.94617 1.02300 1.01648 1.22256 0.95857 0.99013 0.94035
0.89548 1.21580 0.99865 0.82438 0.95642 1.58811 1.80645 1.24922
1.20687 1.00655 0.76467 0.70560 0.71505 1.93407 1.87002 1.84177
1.35342 1.93414 1.85785 1.43442 1.77177 1.31511 1.17218 1.28044
1.44946 0.87946 1.25978 1.08949 0.89191 0.88744 1.70857 1.14523
1.29934 1.32202 0.83457 0.71658 0.77244 0.77410 1.19599 1.20114
1.20071 1.21808 1.00056 0.95383 0.80973 1.21838 0.96375 0.96223
0.92626 1.21660 0.94370 1.00328 1.02616 1.22178 0.95753 0.94321
0.86370 1.86543 1.55107 1.73208 1.22344 0.92121 0.92545 0.92169
0.91849 0.91755 0.91273 0.92522 0.90461 0.93077 0.91513 0.91658
0.93635 0.93156 0.77902
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.59 7.86 37.15 0.29 -1.30 16
2 C -0.09 -1.18 2.97 -88.79 -0.26 -1.44 16
3 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16
4 C 0.13 2.25 6.24 -3.06 -0.02 2.23 16
5 N -1.01 -21.33 3.68 -111.29 -0.41 -21.74 16
6 S 2.70 73.52 4.58 -107.50 -0.49 73.03 16
7 O -1.01 -29.62 17.22 -57.17 -0.98 -30.60 16
8 O -1.01 -29.89 17.22 -57.17 -0.98 -30.88 16
9 C -1.08 -30.75 9.74 30.60 0.30 -30.45 16
10 H 0.10 2.69 7.81 -52.48 -0.41 2.28 16
11 C 0.09 2.61 5.46 -17.82 -0.10 2.51 16
12 N -0.85 -26.47 13.66 55.43 0.76 -25.71 16
13 Si 1.08 24.55 29.90 -169.99 -5.08 19.46 16
14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16
15 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16
16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16
17 C 0.14 2.62 5.49 -2.41 -0.01 2.60 16
18 C -0.07 -0.96 0.62 -152.24 -0.09 -1.06 16
19 C -0.13 -1.89 8.45 37.16 0.31 -1.58 16
20 C 0.09 1.01 4.99 37.16 0.19 1.19 16
21 O -0.57 -6.53 12.75 -35.23 -0.45 -6.98 16
22 H 0.06 0.72 7.31 -51.93 -0.38 0.35 16
23 H 0.06 0.48 7.10 -51.93 -0.37 0.11 16
24 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16
25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
26 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16
27 H 0.28 8.86 6.52 -40.82 -0.27 8.59 16
28 H 0.06 0.98 7.54 -51.93 -0.39 0.58 16
29 H 0.08 1.53 8.06 -51.93 -0.42 1.11 16
30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16
31 H 0.07 0.99 7.57 -51.93 -0.39 0.60 16
32 H 0.06 1.05 7.91 -51.93 -0.41 0.64 16
33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
34 H 0.05 0.50 6.71 -51.93 -0.35 0.16 16
35 H 0.37 2.43 9.12 45.56 0.42 2.85 16
LS Contribution 296.28 15.07 4.46 4.46
Total: -1.00 -36.42 296.28 -6.86 -43.28
By element:
Atomic # 1 Polarization: 7.25 SS G_CDS: -4.28 Total: 2.97 kcal
Atomic # 6 Polarization: -27.89 SS G_CDS: 0.60 Total: -27.29 kcal
Atomic # 7 Polarization: -47.80 SS G_CDS: 0.35 Total: -47.45 kcal
Atomic # 8 Polarization: -66.04 SS G_CDS: -2.42 Total: -68.46 kcal
Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.46 kcal
Atomic # 16 Polarization: 73.52 SS G_CDS: -0.49 Total: 73.03 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -36.42 -6.86 -43.28 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000703738195.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.848 kcal
(2) G-P(sol) polarization free energy of solvation -36.416 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.264 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.127 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds