Wall clock time and date at job start Mon Mar 30 2020 04:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 110.78152 * 2 1 4 4 C 1.54319 * 110.72660 * 236.75723 * 2 1 3 5 5 N 1.47026 * 107.27342 * 263.83183 * 4 2 1 6 6 S 1.65598 * 125.64936 * 181.01938 * 5 4 2 7 7 O 1.42102 * 106.40242 * 336.48244 * 6 5 4 8 8 O 1.42097 * 106.40010 * 203.56374 * 6 5 4 9 9 C 1.76199 * 107.21820 * 90.02482 * 6 5 4 10 10 H 1.08005 * 119.99978 * 0.02562 * 9 6 5 11 11 C 1.37871 * 119.99882 * 179.97438 * 9 6 5 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.47430 * 108.69873 * 1.28368 * 5 4 2 18 18 C 1.55119 * 104.72507 * 335.55411 * 17 5 4 19 19 C 1.53002 * 111.19171 * 279.19394 * 18 17 5 20 20 C 1.53001 * 110.94211 * 155.29030 * 18 17 5 21 21 O 1.42900 * 109.47036 * 67.95319 * 20 18 17 22 22 H 1.09005 * 109.47082 * 181.78442 * 1 2 3 23 23 H 1.08999 * 109.47737 * 301.79217 * 1 2 3 24 24 H 1.09008 * 109.46972 * 61.79129 * 1 2 3 25 25 H 1.09001 * 109.88394 * 144.41344 * 4 2 1 26 26 H 1.09001 * 110.00751 * 23.31643 * 4 2 1 27 27 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 28 28 H 1.08998 * 110.36400 * 94.48611 * 17 5 4 29 29 H 1.08998 * 110.36328 * 216.80441 * 17 5 4 30 30 H 1.09008 * 109.47081 * 172.18854 * 19 18 17 31 31 H 1.09006 * 109.46793 * 292.18357 * 19 18 17 32 32 H 1.08999 * 109.47436 * 52.18364 * 19 18 17 33 33 H 1.09003 * 109.47309 * 187.95346 * 20 18 17 34 34 H 1.09000 * 109.46947 * 307.95857 * 20 18 17 35 35 H 0.96700 * 113.99642 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0761 -0.7912 -1.2071 5 7 2.3717 -2.1532 -0.7388 6 16 3.0025 -3.3753 -1.6611 7 8 2.6849 -3.0643 -3.0108 8 8 2.6194 -4.5909 -1.0328 9 6 4.7567 -3.2774 -1.5275 10 1 5.2099 -2.5089 -0.9188 11 6 5.5508 -4.1825 -2.1991 12 7 4.9990 -5.1187 -2.9399 13 14 7.4105 -4.0783 -2.0579 14 1 8.0297 -5.1575 -2.8686 15 1 7.8716 -2.7576 -2.5563 16 1 7.8087 -4.2375 -0.6362 17 6 2.0075 -2.2524 0.6864 18 6 2.0788 -0.7954 1.2139 19 6 3.5206 -0.3909 1.5280 20 6 1.1818 -0.6132 2.4399 21 8 1.7164 -1.3579 3.5361 22 1 -0.3633 -1.0272 0.0320 23 1 -0.3634 0.5414 0.8734 24 1 -0.3633 0.4858 -0.9057 25 1 2.9869 -0.3207 -1.5774 26 1 1.3284 -0.8258 -1.9995 27 1 4.0333 -5.1725 -3.0134 28 1 0.9974 -2.6479 0.7931 29 1 2.7207 -2.8830 1.2171 30 1 3.5567 0.6731 1.7621 31 1 3.8806 -0.9635 2.3828 32 1 4.1517 -0.5942 0.6628 33 1 1.1389 0.4433 2.7049 34 1 0.1780 -0.9718 2.2122 35 1 1.1975 -1.2882 4.3492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703738195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:50 Heat of formation + Delta-G solvation = -150.126700 kcal Electronic energy + Delta-G solvation = -19425.332845 eV Core-core repulsion = 16356.352997 eV Total energy + Delta-G solvation = -3068.979848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.59228 -36.36409 -35.50078 -34.35336 -33.21425 -32.33755 -31.01097 -27.43881 -25.54999 -25.41499 -24.71345 -21.28204 -19.25855 -18.70870 -17.89605 -17.24876 -16.28564 -15.37884 -15.09353 -14.44563 -14.39397 -14.07461 -13.91848 -13.60462 -13.09861 -12.95939 -12.47714 -12.37613 -12.07452 -11.96106 -11.68033 -11.52148 -11.06572 -10.97503 -10.69053 -10.55146 -10.52808 -10.41033 -10.34796 -10.28219 -10.25906 -9.88317 -9.15672 -8.73753 -8.05811 -7.14669 -5.35388 2.08730 3.25123 3.25865 3.47206 4.06635 4.18460 4.42020 4.56456 4.74789 4.77072 4.97554 5.15860 5.29646 5.30517 5.46091 5.53901 5.61812 5.64606 5.76649 5.87243 5.99964 6.03464 6.06926 6.18763 6.19933 6.25581 6.30170 6.43287 6.59553 6.81244 7.33162 7.59780 7.66081 8.08487 8.65440 10.22537 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.025929 B = 0.007396 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.604350 B = 3784.837265 C = 4183.479556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.086 0.914 4 C 0.131 3.869 5 N -1.015 6.015 6 S 2.705 3.295 7 O -1.009 7.009 8 O -1.008 7.008 9 C -1.082 5.082 10 H 0.102 0.898 11 C 0.090 3.910 12 N -0.846 5.846 13 Si 1.079 2.921 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.275 1.275 17 C 0.144 3.856 18 C -0.069 4.069 19 C -0.133 4.133 20 C 0.092 3.908 21 O -0.567 6.567 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.275 0.725 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 12.141 10.229 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.105 0.895 4 C 0.005 3.995 5 N -0.851 5.851 6 S 2.808 3.192 7 O -0.999 6.999 8 O -0.998 6.998 9 C -1.217 5.217 10 H 0.121 0.879 11 C -0.129 4.129 12 N -0.475 5.475 13 Si 0.902 3.098 14 H -0.196 1.196 15 H -0.201 1.201 16 H -0.201 1.201 17 C 0.018 3.982 18 C -0.071 4.071 19 C -0.190 4.190 20 C 0.014 3.986 21 O -0.372 6.372 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.219 10.585 8.705 14.665 hybrid contribution -1.372 1.235 1.151 2.175 sum -6.591 11.820 9.857 16.742 Atomic orbital electron populations 1.21891 0.94617 1.02300 1.01648 1.22256 0.95857 0.99013 0.94035 0.89548 1.21580 0.99865 0.82438 0.95642 1.58811 1.80645 1.24922 1.20687 1.00655 0.76467 0.70560 0.71505 1.93407 1.87002 1.84177 1.35342 1.93414 1.85785 1.43442 1.77177 1.31511 1.17218 1.28044 1.44946 0.87946 1.25978 1.08949 0.89191 0.88744 1.70857 1.14523 1.29934 1.32202 0.83457 0.71658 0.77244 0.77410 1.19599 1.20114 1.20071 1.21808 1.00056 0.95383 0.80973 1.21838 0.96375 0.96223 0.92626 1.21660 0.94370 1.00328 1.02616 1.22178 0.95753 0.94321 0.86370 1.86543 1.55107 1.73208 1.22344 0.92121 0.92545 0.92169 0.91849 0.91755 0.91273 0.92522 0.90461 0.93077 0.91513 0.91658 0.93635 0.93156 0.77902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 7.86 37.15 0.29 -1.30 16 2 C -0.09 -1.18 2.97 -88.79 -0.26 -1.44 16 3 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 4 C 0.13 2.25 6.24 -3.06 -0.02 2.23 16 5 N -1.01 -21.33 3.68 -111.29 -0.41 -21.74 16 6 S 2.70 73.52 4.58 -107.50 -0.49 73.03 16 7 O -1.01 -29.62 17.22 -57.17 -0.98 -30.60 16 8 O -1.01 -29.89 17.22 -57.17 -0.98 -30.88 16 9 C -1.08 -30.75 9.74 30.60 0.30 -30.45 16 10 H 0.10 2.69 7.81 -52.48 -0.41 2.28 16 11 C 0.09 2.61 5.46 -17.82 -0.10 2.51 16 12 N -0.85 -26.47 13.66 55.43 0.76 -25.71 16 13 Si 1.08 24.55 29.90 -169.99 -5.08 19.46 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 C 0.14 2.62 5.49 -2.41 -0.01 2.60 16 18 C -0.07 -0.96 0.62 -152.24 -0.09 -1.06 16 19 C -0.13 -1.89 8.45 37.16 0.31 -1.58 16 20 C 0.09 1.01 4.99 37.16 0.19 1.19 16 21 O -0.57 -6.53 12.75 -35.23 -0.45 -6.98 16 22 H 0.06 0.72 7.31 -51.93 -0.38 0.35 16 23 H 0.06 0.48 7.10 -51.93 -0.37 0.11 16 24 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16 27 H 0.28 8.86 6.52 -40.82 -0.27 8.59 16 28 H 0.06 0.98 7.54 -51.93 -0.39 0.58 16 29 H 0.08 1.53 8.06 -51.93 -0.42 1.11 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.07 0.99 7.57 -51.93 -0.39 0.60 16 32 H 0.06 1.05 7.91 -51.93 -0.41 0.64 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.50 6.71 -51.93 -0.35 0.16 16 35 H 0.37 2.43 9.12 45.56 0.42 2.85 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -36.42 296.28 -6.86 -43.28 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.28 Total: 2.97 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 0.60 Total: -27.29 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.35 Total: -47.45 kcal Atomic # 8 Polarization: -66.04 SS G_CDS: -2.42 Total: -68.46 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.46 kcal Atomic # 16 Polarization: 73.52 SS G_CDS: -0.49 Total: 73.03 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.42 -6.86 -43.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703738195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.848 kcal (2) G-P(sol) polarization free energy of solvation -36.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds