Wall clock time and date at job start Mon Mar 30 2020 04:54:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09006 * 110.78152 * 2 1
4 4 C 1.54319 * 110.72660 * 236.75723 * 2 1 3
5 5 N 1.47026 * 107.27342 * 263.83183 * 4 2 1
6 6 S 1.65598 * 125.64936 * 181.01938 * 5 4 2
7 7 O 1.42102 * 106.40242 * 336.48244 * 6 5 4
8 8 O 1.42097 * 106.40010 * 203.56374 * 6 5 4
9 9 C 1.76199 * 107.21820 * 90.02482 * 6 5 4
10 10 H 1.08005 * 119.99978 * 0.02562 * 9 6 5
11 11 C 1.37871 * 119.99882 * 179.97438 * 9 6 5
12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 6
13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 6
14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9
15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9
16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9
17 17 C 1.47430 * 108.69873 * 1.28368 * 5 4 2
18 18 C 1.55119 * 104.72507 * 335.55411 * 17 5 4
19 19 C 1.53002 * 111.19171 * 279.19394 * 18 17 5
20 20 C 1.53001 * 110.94211 * 155.29030 * 18 17 5
21 21 O 1.42900 * 109.47036 * 67.95319 * 20 18 17
22 22 H 1.09005 * 109.47082 * 181.78442 * 1 2 3
23 23 H 1.08999 * 109.47737 * 301.79217 * 1 2 3
24 24 H 1.09008 * 109.46972 * 61.79129 * 1 2 3
25 25 H 1.09001 * 109.88394 * 144.41344 * 4 2 1
26 26 H 1.09001 * 110.00751 * 23.31643 * 4 2 1
27 27 H 0.97001 * 119.99646 * 359.97438 * 12 11 9
28 28 H 1.08998 * 110.36400 * 94.48611 * 17 5 4
29 29 H 1.08998 * 110.36328 * 216.80441 * 17 5 4
30 30 H 1.09008 * 109.47081 * 172.18854 * 19 18 17
31 31 H 1.09006 * 109.46793 * 292.18357 * 19 18 17
32 32 H 1.08999 * 109.47436 * 52.18364 * 19 18 17
33 33 H 1.09003 * 109.47309 * 187.95346 * 20 18 17
34 34 H 1.09000 * 109.46947 * 307.95857 * 20 18 17
35 35 H 0.96700 * 113.99642 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9167 1.0191 0.0000
4 6 2.0761 -0.7912 -1.2071
5 7 2.3717 -2.1532 -0.7388
6 16 3.0025 -3.3753 -1.6611
7 8 2.6849 -3.0643 -3.0108
8 8 2.6194 -4.5909 -1.0328
9 6 4.7567 -3.2774 -1.5275
10 1 5.2099 -2.5089 -0.9188
11 6 5.5508 -4.1825 -2.1991
12 7 4.9990 -5.1187 -2.9399
13 14 7.4105 -4.0783 -2.0579
14 1 8.0297 -5.1575 -2.8686
15 1 7.8716 -2.7576 -2.5563
16 1 7.8087 -4.2375 -0.6362
17 6 2.0075 -2.2524 0.6864
18 6 2.0788 -0.7954 1.2139
19 6 3.5206 -0.3909 1.5280
20 6 1.1818 -0.6132 2.4399
21 8 1.7164 -1.3579 3.5361
22 1 -0.3633 -1.0272 0.0320
23 1 -0.3634 0.5414 0.8734
24 1 -0.3633 0.4858 -0.9057
25 1 2.9869 -0.3207 -1.5774
26 1 1.3284 -0.8258 -1.9995
27 1 4.0333 -5.1725 -3.0134
28 1 0.9974 -2.6479 0.7931
29 1 2.7207 -2.8830 1.2171
30 1 3.5567 0.6731 1.7621
31 1 3.8806 -0.9635 2.3828
32 1 4.1517 -0.5942 0.6628
33 1 1.1389 0.4433 2.7049
34 1 0.1780 -0.9718 2.2122
35 1 1.1975 -1.2882 4.3492
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000703738195.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:54:50
Heat of formation + Delta-G solvation = -181.350855 kcal
Electronic energy + Delta-G solvation = -19426.686826 eV
Core-core repulsion = 16356.352997 eV
Total energy + Delta-G solvation = -3070.333829 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.78325 -37.78193 -37.29335 -36.63032 -35.42842 -33.72398 -32.08506 -28.62542
-27.78971 -26.42101 -26.04597 -22.54026 -21.42782 -19.89857 -19.60804 -18.40885
-18.08977 -17.13047 -16.53716 -16.20918 -16.00959 -15.66043 -15.31791 -14.80320
-14.52085 -14.36126 -14.12050 -13.51539 -13.38872 -13.14018 -13.08262 -13.03242
-13.01807 -12.84358 -12.79567 -12.73332 -12.00657 -11.96255 -11.64581 -11.39260
-11.37075 -11.23867 -10.81475 -10.70904 -9.85273 -9.43178 -7.69030 0.01741
1.41392 1.46139 1.72751 2.28828 2.53065 2.53907 3.17393 3.39871
3.45606 3.63785 3.96940 4.12295 4.15257 4.25634 4.34434 4.50522
4.57784 4.62131 4.66985 4.75331 4.86381 4.90198 4.99659 5.03967
5.12435 5.16383 5.21595 5.41103 5.44066 5.51091 5.66744 5.74199
6.43204 7.04616 7.88299
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.025929 B = 0.007396 C = 0.006691
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1079.604350 B = 3784.837265 C = 4183.479556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.077 4.077
3 H 0.120 0.880
4 C 0.115 3.885
5 N -1.014 6.014
6 S 2.710 3.290
7 O -1.040 7.040
8 O -1.044 7.044
9 C -1.098 5.098
10 H 0.118 0.882
11 C 0.034 3.966
12 N -0.875 5.875
13 Si 1.120 2.880
14 H -0.265 1.265
15 H -0.248 1.248
16 H -0.251 1.251
17 C 0.132 3.868
18 C -0.064 4.064
19 C -0.132 4.132
20 C 0.095 3.905
21 O -0.592 6.592
22 H 0.042 0.958
23 H 0.089 0.911
24 H 0.069 0.931
25 H 0.061 0.939
26 H 0.062 0.938
27 H 0.255 0.745
28 H 0.063 0.937
29 H 0.050 0.950
30 H 0.083 0.917
31 H 0.055 0.945
32 H 0.038 0.962
33 H 0.080 0.920
34 H 0.062 0.938
35 H 0.397 0.603
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.446 15.017 12.071 20.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.097 4.097
3 H 0.138 0.862
4 C -0.010 4.010
5 N -0.854 5.854
6 S 2.814 3.186
7 O -1.030 7.030
8 O -1.034 7.034
9 C -1.232 5.232
10 H 0.136 0.864
11 C -0.176 4.176
12 N -0.506 5.506
13 Si 0.933 3.067
14 H -0.189 1.189
15 H -0.172 1.172
16 H -0.175 1.175
17 C 0.007 3.993
18 C -0.066 4.066
19 C -0.189 4.189
20 C 0.018 3.982
21 O -0.401 6.401
22 H 0.062 0.938
23 H 0.108 0.892
24 H 0.088 0.912
25 H 0.079 0.921
26 H 0.080 0.920
27 H 0.065 0.935
28 H 0.081 0.919
29 H 0.069 0.931
30 H 0.102 0.898
31 H 0.074 0.926
32 H 0.057 0.943
33 H 0.098 0.902
34 H 0.080 0.920
35 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -5.205 13.470 10.564 17.892
hybrid contribution -1.464 0.385 0.641 1.644
sum -6.669 13.855 11.205 19.025
Atomic orbital electron populations
1.21923 0.92728 1.01950 1.03783 1.22283 0.97305 0.99393 0.90680
0.86239 1.22000 1.00131 0.80848 0.98069 1.58293 1.79992 1.25374
1.21700 1.00060 0.76374 0.70925 0.71219 1.93349 1.87267 1.84843
1.37575 1.93352 1.86117 1.46238 1.77697 1.31899 1.18382 1.28242
1.44721 0.86388 1.27883 1.14102 0.88163 0.87424 1.71010 1.13132
1.31870 1.34583 0.83085 0.65667 0.78884 0.79087 1.18905 1.17159
1.17534 1.22102 0.99406 0.98682 0.79079 1.21881 0.97302 0.92752
0.94625 1.21656 0.94044 1.02247 1.00962 1.22176 0.94976 0.96248
0.84846 1.86492 1.56274 1.73677 1.23629 0.93835 0.89177 0.91242
0.92070 0.92000 0.93467 0.91919 0.93109 0.89797 0.92637 0.94283
0.90210 0.92012 0.75361
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.61 7.86 71.98 0.57 -2.05 16
2 C -0.08 -1.73 2.97 -9.61 -0.03 -1.76 16
3 H 0.12 1.99 8.05 -2.38 -0.02 1.97 16
4 C 0.11 3.85 6.24 86.73 0.54 4.40 16
5 N -1.01 -43.36 3.68 -506.02 -1.86 -45.22 16
6 S 2.71 153.12 4.58 -56.49 -0.26 152.86 16
7 O -1.04 -63.64 17.22 -128.00 -2.20 -65.85 16
8 O -1.04 -64.96 17.22 -128.00 -2.20 -67.17 16
9 C -1.10 -63.70 9.74 67.73 0.66 -63.04 16
10 H 0.12 6.26 7.81 -2.91 -0.02 6.23 16
11 C 0.03 2.02 5.46 84.65 0.46 2.48 16
12 N -0.88 -56.56 13.66 21.45 0.29 -56.26 16
13 Si 1.12 48.41 29.90 68.60 2.05 50.46 16
14 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16
15 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16
16 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16
17 C 0.13 4.82 5.49 86.93 0.48 5.30 16
18 C -0.06 -1.63 0.62 -50.71 -0.03 -1.66 16
19 C -0.13 -3.47 8.45 71.98 0.61 -2.86 16
20 C 0.10 1.70 4.99 71.98 0.36 2.06 16
21 O -0.59 -11.96 12.75 -148.98 -1.90 -13.86 16
22 H 0.04 0.93 7.31 -2.38 -0.02 0.91 16
23 H 0.09 1.04 7.10 -2.39 -0.02 1.02 16
24 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16
25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16
26 H 0.06 2.08 7.85 -2.39 -0.02 2.06 16
27 H 0.25 17.22 6.52 -92.71 -0.60 16.61 16
28 H 0.06 2.16 7.54 -2.39 -0.02 2.15 16
29 H 0.05 2.08 8.06 -2.39 -0.02 2.06 16
30 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16
31 H 0.05 1.57 7.57 -2.38 -0.02 1.55 16
32 H 0.04 1.21 7.91 -2.39 -0.02 1.19 16
33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
34 H 0.06 0.98 6.71 -2.39 -0.02 0.96 16
35 H 0.40 3.88 9.12 -74.06 -0.68 3.21 16
Total: -1.00 -83.02 296.28 -1.89 -84.92
By element:
Atomic # 1 Polarization: 16.65 SS G_CDS: 0.58 Total: 17.23 kcal
Atomic # 6 Polarization: -60.73 SS G_CDS: 3.61 Total: -57.11 kcal
Atomic # 7 Polarization: -99.92 SS G_CDS: -1.57 Total: -101.49 kcal
Atomic # 8 Polarization: -140.56 SS G_CDS: -6.31 Total: -146.87 kcal
Atomic # 14 Polarization: 48.41 SS G_CDS: 2.05 Total: 50.46 kcal
Atomic # 16 Polarization: 153.12 SS G_CDS: -0.26 Total: 152.86 kcal
Total: -83.02 -1.89 -84.92 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000703738195.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.432 kcal
(2) G-P(sol) polarization free energy of solvation -83.025 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.457 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.894 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.918 kcal
(6) G-S(sol) free energy of system = (1) + (5) -181.351 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds