Wall clock time and date at job start Mon Mar 30 2020 04:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 110.78152 * 2 1 4 4 C 1.54319 * 110.72660 * 236.75723 * 2 1 3 5 5 N 1.47026 * 107.27342 * 263.83183 * 4 2 1 6 6 S 1.65598 * 125.64936 * 181.01938 * 5 4 2 7 7 O 1.42102 * 106.40242 * 336.48244 * 6 5 4 8 8 O 1.42097 * 106.40010 * 203.56374 * 6 5 4 9 9 C 1.76199 * 107.21820 * 90.02482 * 6 5 4 10 10 H 1.08005 * 119.99978 * 0.02562 * 9 6 5 11 11 C 1.37871 * 119.99882 * 179.97438 * 9 6 5 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.47430 * 108.69873 * 1.28368 * 5 4 2 18 18 C 1.55119 * 104.72507 * 335.55411 * 17 5 4 19 19 C 1.53002 * 111.19171 * 279.19394 * 18 17 5 20 20 C 1.53001 * 110.94211 * 155.29030 * 18 17 5 21 21 O 1.42900 * 109.47036 * 67.95319 * 20 18 17 22 22 H 1.09005 * 109.47082 * 181.78442 * 1 2 3 23 23 H 1.08999 * 109.47737 * 301.79217 * 1 2 3 24 24 H 1.09008 * 109.46972 * 61.79129 * 1 2 3 25 25 H 1.09001 * 109.88394 * 144.41344 * 4 2 1 26 26 H 1.09001 * 110.00751 * 23.31643 * 4 2 1 27 27 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 28 28 H 1.08998 * 110.36400 * 94.48611 * 17 5 4 29 29 H 1.08998 * 110.36328 * 216.80441 * 17 5 4 30 30 H 1.09008 * 109.47081 * 172.18854 * 19 18 17 31 31 H 1.09006 * 109.46793 * 292.18357 * 19 18 17 32 32 H 1.08999 * 109.47436 * 52.18364 * 19 18 17 33 33 H 1.09003 * 109.47309 * 187.95346 * 20 18 17 34 34 H 1.09000 * 109.46947 * 307.95857 * 20 18 17 35 35 H 0.96700 * 113.99642 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0761 -0.7912 -1.2071 5 7 2.3717 -2.1532 -0.7388 6 16 3.0025 -3.3753 -1.6611 7 8 2.6849 -3.0643 -3.0108 8 8 2.6194 -4.5909 -1.0328 9 6 4.7567 -3.2774 -1.5275 10 1 5.2099 -2.5089 -0.9188 11 6 5.5508 -4.1825 -2.1991 12 7 4.9990 -5.1187 -2.9399 13 14 7.4105 -4.0783 -2.0579 14 1 8.0297 -5.1575 -2.8686 15 1 7.8716 -2.7576 -2.5563 16 1 7.8087 -4.2375 -0.6362 17 6 2.0075 -2.2524 0.6864 18 6 2.0788 -0.7954 1.2139 19 6 3.5206 -0.3909 1.5280 20 6 1.1818 -0.6132 2.4399 21 8 1.7164 -1.3579 3.5361 22 1 -0.3633 -1.0272 0.0320 23 1 -0.3634 0.5414 0.8734 24 1 -0.3633 0.4858 -0.9057 25 1 2.9869 -0.3207 -1.5774 26 1 1.3284 -0.8258 -1.9995 27 1 4.0333 -5.1725 -3.0134 28 1 0.9974 -2.6479 0.7931 29 1 2.7207 -2.8830 1.2171 30 1 3.5567 0.6731 1.7621 31 1 3.8806 -0.9635 2.3828 32 1 4.1517 -0.5942 0.6628 33 1 1.1389 0.4433 2.7049 34 1 0.1780 -0.9718 2.2122 35 1 1.1975 -1.2882 4.3492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703738195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:50 Heat of formation + Delta-G solvation = -181.350855 kcal Electronic energy + Delta-G solvation = -19426.686826 eV Core-core repulsion = 16356.352997 eV Total energy + Delta-G solvation = -3070.333829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78325 -37.78193 -37.29335 -36.63032 -35.42842 -33.72398 -32.08506 -28.62542 -27.78971 -26.42101 -26.04597 -22.54026 -21.42782 -19.89857 -19.60804 -18.40885 -18.08977 -17.13047 -16.53716 -16.20918 -16.00959 -15.66043 -15.31791 -14.80320 -14.52085 -14.36126 -14.12050 -13.51539 -13.38872 -13.14018 -13.08262 -13.03242 -13.01807 -12.84358 -12.79567 -12.73332 -12.00657 -11.96255 -11.64581 -11.39260 -11.37075 -11.23867 -10.81475 -10.70904 -9.85273 -9.43178 -7.69030 0.01741 1.41392 1.46139 1.72751 2.28828 2.53065 2.53907 3.17393 3.39871 3.45606 3.63785 3.96940 4.12295 4.15257 4.25634 4.34434 4.50522 4.57784 4.62131 4.66985 4.75331 4.86381 4.90198 4.99659 5.03967 5.12435 5.16383 5.21595 5.41103 5.44066 5.51091 5.66744 5.74199 6.43204 7.04616 7.88299 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.025929 B = 0.007396 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.604350 B = 3784.837265 C = 4183.479556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 H 0.120 0.880 4 C 0.115 3.885 5 N -1.014 6.014 6 S 2.710 3.290 7 O -1.040 7.040 8 O -1.044 7.044 9 C -1.098 5.098 10 H 0.118 0.882 11 C 0.034 3.966 12 N -0.875 5.875 13 Si 1.120 2.880 14 H -0.265 1.265 15 H -0.248 1.248 16 H -0.251 1.251 17 C 0.132 3.868 18 C -0.064 4.064 19 C -0.132 4.132 20 C 0.095 3.905 21 O -0.592 6.592 22 H 0.042 0.958 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.255 0.745 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 15.017 12.071 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 H 0.138 0.862 4 C -0.010 4.010 5 N -0.854 5.854 6 S 2.814 3.186 7 O -1.030 7.030 8 O -1.034 7.034 9 C -1.232 5.232 10 H 0.136 0.864 11 C -0.176 4.176 12 N -0.506 5.506 13 Si 0.933 3.067 14 H -0.189 1.189 15 H -0.172 1.172 16 H -0.175 1.175 17 C 0.007 3.993 18 C -0.066 4.066 19 C -0.189 4.189 20 C 0.018 3.982 21 O -0.401 6.401 22 H 0.062 0.938 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.205 13.470 10.564 17.892 hybrid contribution -1.464 0.385 0.641 1.644 sum -6.669 13.855 11.205 19.025 Atomic orbital electron populations 1.21923 0.92728 1.01950 1.03783 1.22283 0.97305 0.99393 0.90680 0.86239 1.22000 1.00131 0.80848 0.98069 1.58293 1.79992 1.25374 1.21700 1.00060 0.76374 0.70925 0.71219 1.93349 1.87267 1.84843 1.37575 1.93352 1.86117 1.46238 1.77697 1.31899 1.18382 1.28242 1.44721 0.86388 1.27883 1.14102 0.88163 0.87424 1.71010 1.13132 1.31870 1.34583 0.83085 0.65667 0.78884 0.79087 1.18905 1.17159 1.17534 1.22102 0.99406 0.98682 0.79079 1.21881 0.97302 0.92752 0.94625 1.21656 0.94044 1.02247 1.00962 1.22176 0.94976 0.96248 0.84846 1.86492 1.56274 1.73677 1.23629 0.93835 0.89177 0.91242 0.92070 0.92000 0.93467 0.91919 0.93109 0.89797 0.92637 0.94283 0.90210 0.92012 0.75361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 7.86 71.98 0.57 -2.05 16 2 C -0.08 -1.73 2.97 -9.61 -0.03 -1.76 16 3 H 0.12 1.99 8.05 -2.38 -0.02 1.97 16 4 C 0.11 3.85 6.24 86.73 0.54 4.40 16 5 N -1.01 -43.36 3.68 -506.02 -1.86 -45.22 16 6 S 2.71 153.12 4.58 -56.49 -0.26 152.86 16 7 O -1.04 -63.64 17.22 -128.00 -2.20 -65.85 16 8 O -1.04 -64.96 17.22 -128.00 -2.20 -67.17 16 9 C -1.10 -63.70 9.74 67.73 0.66 -63.04 16 10 H 0.12 6.26 7.81 -2.91 -0.02 6.23 16 11 C 0.03 2.02 5.46 84.65 0.46 2.48 16 12 N -0.88 -56.56 13.66 21.45 0.29 -56.26 16 13 Si 1.12 48.41 29.90 68.60 2.05 50.46 16 14 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 16 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 17 C 0.13 4.82 5.49 86.93 0.48 5.30 16 18 C -0.06 -1.63 0.62 -50.71 -0.03 -1.66 16 19 C -0.13 -3.47 8.45 71.98 0.61 -2.86 16 20 C 0.10 1.70 4.99 71.98 0.36 2.06 16 21 O -0.59 -11.96 12.75 -148.98 -1.90 -13.86 16 22 H 0.04 0.93 7.31 -2.38 -0.02 0.91 16 23 H 0.09 1.04 7.10 -2.39 -0.02 1.02 16 24 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 2.08 7.85 -2.39 -0.02 2.06 16 27 H 0.25 17.22 6.52 -92.71 -0.60 16.61 16 28 H 0.06 2.16 7.54 -2.39 -0.02 2.15 16 29 H 0.05 2.08 8.06 -2.39 -0.02 2.06 16 30 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.05 1.57 7.57 -2.38 -0.02 1.55 16 32 H 0.04 1.21 7.91 -2.39 -0.02 1.19 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.98 6.71 -2.39 -0.02 0.96 16 35 H 0.40 3.88 9.12 -74.06 -0.68 3.21 16 Total: -1.00 -83.02 296.28 -1.89 -84.92 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.58 Total: 17.23 kcal Atomic # 6 Polarization: -60.73 SS G_CDS: 3.61 Total: -57.11 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -1.57 Total: -101.49 kcal Atomic # 8 Polarization: -140.56 SS G_CDS: -6.31 Total: -146.87 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.05 Total: 50.46 kcal Atomic # 16 Polarization: 153.12 SS G_CDS: -0.26 Total: 152.86 kcal Total: -83.02 -1.89 -84.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703738195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.432 kcal (2) G-P(sol) polarization free energy of solvation -83.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds