Wall clock time and date at job start Mon Mar 30 2020 05:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47031 * 2 1 4 4 C 1.42906 * 113.99720 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47020 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.63905 * 51.85201 * 5 4 3 7 7 C 1.55160 * 110.87080 * 288.60839 * 5 4 3 8 8 C 1.54910 * 101.58122 * 206.06270 * 7 5 4 9 9 N 1.47425 * 104.83231 * 37.00939 * 8 7 5 10 10 S 1.65595 * 125.64857 * 156.13658 * 9 8 7 11 11 O 1.42100 * 106.40296 * 23.23138 * 10 9 8 12 12 O 1.42097 * 106.40565 * 156.15132 * 10 9 8 13 13 C 1.76199 * 107.21760 * 269.69408 * 10 9 8 14 14 H 1.08000 * 119.99979 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99895 * 180.02562 * 13 10 9 16 16 N 1.31520 * 119.99910 * 180.02562 * 15 13 10 17 17 Si 1.86800 * 120.00208 * 359.97438 * 15 13 10 18 18 H 1.48495 * 109.47068 * 90.00078 * 17 15 13 19 19 H 1.48499 * 109.46832 * 210.00388 * 17 15 13 20 20 H 1.48502 * 109.46980 * 330.00030 * 17 15 13 21 21 C 1.47026 * 108.70074 * 335.87083 * 9 8 7 22 22 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47055 * 300.00401 * 1 2 3 24 24 H 1.08997 * 109.46834 * 60.00221 * 1 2 3 25 25 H 1.08996 * 109.47166 * 239.99698 * 2 1 3 26 26 H 1.09002 * 109.47259 * 119.99766 * 2 1 3 27 27 H 1.08992 * 109.47484 * 59.99602 * 4 3 2 28 28 H 1.09000 * 109.46872 * 299.99487 * 4 3 2 29 29 H 1.08991 * 111.00600 * 324.13888 * 7 5 4 30 30 H 1.09004 * 111.00084 * 87.95334 * 7 5 4 31 31 H 1.09001 * 110.36852 * 278.17238 * 8 7 5 32 32 H 1.08998 * 110.36449 * 155.84885 * 8 7 5 33 33 H 0.97001 * 119.99717 * 180.02562 * 16 15 13 34 34 H 1.09004 * 109.87531 * 120.47707 * 21 9 8 35 35 H 1.08996 * 109.88343 * 241.48426 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 1 3.3160 3.4723 0.8011 7 6 3.5205 3.5913 -1.3753 8 6 4.5482 4.7501 -1.4039 9 7 5.7549 4.2003 -0.7596 10 16 7.3028 4.7424 -0.9879 11 8 7.1954 6.0877 -1.4328 12 8 8.0358 4.3625 0.1687 13 6 7.9832 3.8271 -2.3310 14 1 7.3884 3.0752 -2.8283 15 6 9.2753 4.0701 -2.7464 16 7 9.7829 3.3873 -3.7493 17 14 10.3042 5.3701 -1.8858 18 1 11.0471 4.7483 -0.7604 19 1 11.2681 5.9573 -2.8509 20 1 9.4153 6.4382 -1.3621 21 6 5.3555 3.0951 0.1240 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8333 0.9766 -0.8907 28 1 3.8340 0.9764 0.8892 29 1 3.7000 2.8896 -2.1897 30 1 2.4998 3.9726 -1.4087 31 1 4.1728 5.6041 -0.8400 32 1 4.7654 5.0391 -2.4321 33 1 10.6921 3.5580 -4.0413 34 1 5.8493 2.1746 -0.1875 35 1 5.6234 3.3290 1.1544 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707558569.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:11 Heat of formation + Delta-G solvation = -131.156389 kcal Electronic energy + Delta-G solvation = -18483.572786 eV Core-core repulsion = 15415.415552 eV Total energy + Delta-G solvation = -3068.157234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.82940 -37.32303 -35.64087 -34.42758 -33.02941 -32.24412 -30.41399 -29.05080 -26.38276 -24.99075 -22.93229 -21.89254 -20.20109 -18.72993 -17.55815 -16.94060 -16.71331 -16.14665 -15.54586 -15.11192 -14.49958 -14.08789 -13.86993 -13.45208 -13.16273 -12.95765 -12.80586 -12.64477 -12.54129 -12.12945 -11.64666 -11.43260 -11.33137 -11.24357 -10.95209 -10.76415 -10.64783 -10.59200 -10.46967 -10.46143 -9.82914 -9.63942 -9.20672 -9.13053 -8.21112 -6.80164 -5.33536 1.97991 3.07209 3.17820 3.26996 3.54280 3.95543 4.23780 4.57742 4.74129 4.85412 4.87350 4.95481 5.08066 5.20557 5.35542 5.39437 5.45384 5.53157 5.62799 5.67412 5.71607 5.81415 5.91131 5.98144 6.00945 6.11916 6.22175 6.29515 6.46820 6.72545 7.12516 7.24785 7.49387 8.22553 8.70859 10.32335 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.039449 B = 0.004993 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.607212 B = 5606.409031 C = 5823.564036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.388 6.388 4 C 0.071 3.929 5 C -0.097 4.097 6 H 0.090 0.910 7 C -0.120 4.120 8 C 0.124 3.876 9 N -1.012 6.012 10 S 2.691 3.309 11 O -1.003 7.003 12 O -1.007 7.007 13 C -1.016 5.016 14 H 0.121 0.879 15 C 0.153 3.847 16 N -0.824 5.824 17 Si 0.801 3.199 18 H -0.246 1.246 19 H -0.254 1.254 20 H -0.220 1.220 21 C 0.132 3.868 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.280 0.720 34 H 0.066 0.934 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.563 -5.159 5.824 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.005 4.005 5 C -0.116 4.116 6 H 0.108 0.892 7 C -0.159 4.159 8 C -0.002 4.002 9 N -0.849 5.849 10 S 2.794 3.206 11 O -0.993 6.993 12 O -0.997 6.997 13 C -1.150 5.150 14 H 0.139 0.861 15 C -0.067 4.067 16 N -0.453 5.453 17 Si 0.621 3.379 18 H -0.170 1.170 19 H -0.178 1.178 20 H -0.142 1.142 21 C 0.006 3.994 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.055 -4.328 6.209 15.964 hybrid contribution 0.806 -0.383 -0.358 0.961 sum -13.250 -4.711 5.851 15.231 Atomic orbital electron populations 1.21735 0.93937 1.02034 1.03074 1.22433 0.95416 0.84118 1.00068 1.87865 1.21355 1.26081 1.95461 1.22508 0.80893 0.96488 1.00654 1.22186 0.95488 0.94589 0.99382 0.89202 1.22809 0.98948 0.97629 0.96493 1.21866 0.84667 0.95619 0.98076 1.58635 1.22847 1.46202 1.57194 1.00997 0.70074 0.73935 0.75549 1.93460 1.85332 1.37021 1.83527 1.93397 1.69095 1.84665 1.52582 1.30553 1.09374 1.38132 1.36968 0.86135 1.24435 0.96078 0.93683 0.92454 1.69994 1.16080 1.36671 1.22572 0.87875 0.84424 0.83706 0.81915 1.16973 1.17823 1.14162 1.21449 0.93148 0.90423 0.94391 0.91313 0.91958 0.91852 0.93415 0.93546 0.92642 0.92980 0.90615 0.90181 0.92122 0.90472 0.90912 0.91596 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.52 6.66 37.16 0.25 0.77 16 3 O -0.39 -4.66 10.29 -35.23 -0.36 -5.02 16 4 C 0.07 0.85 5.23 37.16 0.19 1.04 16 5 C -0.10 -1.29 3.20 -88.79 -0.28 -1.57 16 6 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 7 C -0.12 -1.63 6.48 -24.58 -0.16 -1.79 16 8 C 0.12 2.07 6.98 -2.53 -0.02 2.05 16 9 N -1.01 -20.41 3.70 -111.42 -0.41 -20.82 16 10 S 2.69 68.95 4.44 -107.50 -0.48 68.47 16 11 O -1.00 -27.37 15.60 -57.17 -0.89 -28.26 16 12 O -1.01 -27.32 16.41 -57.17 -0.94 -28.26 16 13 C -1.02 -28.81 10.29 30.60 0.31 -28.50 16 14 H 0.12 3.46 8.06 -52.49 -0.42 3.03 16 15 C 0.15 4.44 5.47 -17.82 -0.10 4.35 16 16 N -0.82 -24.01 13.96 55.43 0.77 -23.24 16 17 Si 0.80 20.78 26.54 -169.99 -4.51 16.27 16 18 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.25 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.22 -5.80 5.61 56.52 0.32 -5.48 16 21 C 0.13 2.20 6.58 -3.07 -0.02 2.18 16 22 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.66 8.01 -51.93 -0.42 0.24 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.07 1.08 7.82 -51.93 -0.41 0.67 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -33.14 301.64 -7.24 -40.38 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.53 Total: -1.82 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 0.56 Total: -22.25 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.36 Total: -44.06 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -2.19 Total: -61.54 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.51 Total: 16.27 kcal Atomic # 16 Polarization: 68.95 SS G_CDS: -0.48 Total: 68.47 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.14 -7.24 -40.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707558569.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.778 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds