Wall clock time and date at job start Mon Mar 30 2020 05:07:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 O 1.42898 * 109.47031 * 2 1
4 4 C 1.42906 * 113.99720 * 180.02562 * 3 2 1
5 5 C 1.53001 * 109.47020 * 179.97438 * 4 3 2
6 6 H 1.09002 * 110.63905 * 51.85201 * 5 4 3
7 7 C 1.55160 * 110.87080 * 288.60839 * 5 4 3
8 8 C 1.54910 * 101.58122 * 206.06270 * 7 5 4
9 9 N 1.47425 * 104.83231 * 37.00939 * 8 7 5
10 10 S 1.65595 * 125.64857 * 156.13658 * 9 8 7
11 11 O 1.42100 * 106.40296 * 23.23138 * 10 9 8
12 12 O 1.42097 * 106.40565 * 156.15132 * 10 9 8
13 13 C 1.76199 * 107.21760 * 269.69408 * 10 9 8
14 14 H 1.08000 * 119.99979 * 359.97438 * 13 10 9
15 15 C 1.37877 * 119.99895 * 180.02562 * 13 10 9
16 16 N 1.31520 * 119.99910 * 180.02562 * 15 13 10
17 17 Si 1.86800 * 120.00208 * 359.97438 * 15 13 10
18 18 H 1.48495 * 109.47068 * 90.00078 * 17 15 13
19 19 H 1.48499 * 109.46832 * 210.00388 * 17 15 13
20 20 H 1.48502 * 109.46980 * 330.00030 * 17 15 13
21 21 C 1.47026 * 108.70074 * 335.87083 * 9 8 7
22 22 H 1.08997 * 109.47257 * 180.02562 * 1 2 3
23 23 H 1.09005 * 109.47055 * 300.00401 * 1 2 3
24 24 H 1.08997 * 109.46834 * 60.00221 * 1 2 3
25 25 H 1.08996 * 109.47166 * 239.99698 * 2 1 3
26 26 H 1.09002 * 109.47259 * 119.99766 * 2 1 3
27 27 H 1.08992 * 109.47484 * 59.99602 * 4 3 2
28 28 H 1.09000 * 109.46872 * 299.99487 * 4 3 2
29 29 H 1.08991 * 111.00600 * 324.13888 * 7 5 4
30 30 H 1.09004 * 111.00084 * 87.95334 * 7 5 4
31 31 H 1.09001 * 110.36852 * 278.17238 * 8 7 5
32 32 H 1.08998 * 110.36449 * 155.84885 * 8 7 5
33 33 H 0.97001 * 119.99717 * 180.02562 * 16 15 13
34 34 H 1.09004 * 109.87531 * 120.47707 * 21 9 8
35 35 H 1.08996 * 109.88343 * 241.48426 * 21 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4309 1.4601 -0.0006
5 6 3.8254 2.9383 -0.0012
6 1 3.3160 3.4723 0.8011
7 6 3.5205 3.5913 -1.3753
8 6 4.5482 4.7501 -1.4039
9 7 5.7549 4.2003 -0.7596
10 16 7.3028 4.7424 -0.9879
11 8 7.1954 6.0877 -1.4328
12 8 8.0358 4.3625 0.1687
13 6 7.9832 3.8271 -2.3310
14 1 7.3884 3.0752 -2.8283
15 6 9.2753 4.0701 -2.7464
16 7 9.7829 3.3873 -3.7493
17 14 10.3042 5.3701 -1.8858
18 1 11.0471 4.7483 -0.7604
19 1 11.2681 5.9573 -2.8509
20 1 9.4153 6.4382 -1.3621
21 6 5.3555 3.0951 0.1240
22 1 -0.3633 -1.0276 0.0005
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 1.8933 -0.5139 -0.8899
26 1 1.8934 -0.5138 0.8900
27 1 3.8333 0.9766 -0.8907
28 1 3.8340 0.9764 0.8892
29 1 3.7000 2.8896 -2.1897
30 1 2.4998 3.9726 -1.4087
31 1 4.1728 5.6041 -0.8400
32 1 4.7654 5.0391 -2.4321
33 1 10.6921 3.5580 -4.0413
34 1 5.8493 2.1746 -0.1875
35 1 5.6234 3.3290 1.1544
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000707558569.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:11
Heat of formation + Delta-G solvation = -131.156389 kcal
Electronic energy + Delta-G solvation = -18483.572786 eV
Core-core repulsion = 15415.415552 eV
Total energy + Delta-G solvation = -3068.157234 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-38.82940 -37.32303 -35.64087 -34.42758 -33.02941 -32.24412 -30.41399 -29.05080
-26.38276 -24.99075 -22.93229 -21.89254 -20.20109 -18.72993 -17.55815 -16.94060
-16.71331 -16.14665 -15.54586 -15.11192 -14.49958 -14.08789 -13.86993 -13.45208
-13.16273 -12.95765 -12.80586 -12.64477 -12.54129 -12.12945 -11.64666 -11.43260
-11.33137 -11.24357 -10.95209 -10.76415 -10.64783 -10.59200 -10.46967 -10.46143
-9.82914 -9.63942 -9.20672 -9.13053 -8.21112 -6.80164 -5.33536 1.97991
3.07209 3.17820 3.26996 3.54280 3.95543 4.23780 4.57742 4.74129
4.85412 4.87350 4.95481 5.08066 5.20557 5.35542 5.39437 5.45384
5.53157 5.62799 5.67412 5.71607 5.81415 5.91131 5.98144 6.00945
6.11916 6.22175 6.29515 6.46820 6.72545 7.12516 7.24785 7.49387
8.22553 8.70859 10.32335
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.039449 B = 0.004993 C = 0.004807
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 709.607212 B = 5606.409031 C = 5823.564036
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.056 3.944
3 O -0.388 6.388
4 C 0.071 3.929
5 C -0.097 4.097
6 H 0.090 0.910
7 C -0.120 4.120
8 C 0.124 3.876
9 N -1.012 6.012
10 S 2.691 3.309
11 O -1.003 7.003
12 O -1.007 7.007
13 C -1.016 5.016
14 H 0.121 0.879
15 C 0.153 3.847
16 N -0.824 5.824
17 Si 0.801 3.199
18 H -0.246 1.246
19 H -0.254 1.254
20 H -0.220 1.220
21 C 0.132 3.868
22 H 0.068 0.932
23 H 0.061 0.939
24 H 0.062 0.938
25 H 0.048 0.952
26 H 0.046 0.954
27 H 0.055 0.945
28 H 0.052 0.948
29 H 0.075 0.925
30 H 0.080 0.920
31 H 0.060 0.940
32 H 0.077 0.923
33 H 0.280 0.720
34 H 0.066 0.934
35 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.563 -5.159 5.824 16.511
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.020 4.020
3 O -0.308 6.308
4 C -0.005 4.005
5 C -0.116 4.116
6 H 0.108 0.892
7 C -0.159 4.159
8 C -0.002 4.002
9 N -0.849 5.849
10 S 2.794 3.206
11 O -0.993 6.993
12 O -0.997 6.997
13 C -1.150 5.150
14 H 0.139 0.861
15 C -0.067 4.067
16 N -0.453 5.453
17 Si 0.621 3.379
18 H -0.170 1.170
19 H -0.178 1.178
20 H -0.142 1.142
21 C 0.006 3.994
22 H 0.087 0.913
23 H 0.080 0.920
24 H 0.081 0.919
25 H 0.066 0.934
26 H 0.065 0.935
27 H 0.074 0.926
28 H 0.070 0.930
29 H 0.094 0.906
30 H 0.098 0.902
31 H 0.079 0.921
32 H 0.095 0.905
33 H 0.091 0.909
34 H 0.084 0.916
35 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -14.055 -4.328 6.209 15.964
hybrid contribution 0.806 -0.383 -0.358 0.961
sum -13.250 -4.711 5.851 15.231
Atomic orbital electron populations
1.21735 0.93937 1.02034 1.03074 1.22433 0.95416 0.84118 1.00068
1.87865 1.21355 1.26081 1.95461 1.22508 0.80893 0.96488 1.00654
1.22186 0.95488 0.94589 0.99382 0.89202 1.22809 0.98948 0.97629
0.96493 1.21866 0.84667 0.95619 0.98076 1.58635 1.22847 1.46202
1.57194 1.00997 0.70074 0.73935 0.75549 1.93460 1.85332 1.37021
1.83527 1.93397 1.69095 1.84665 1.52582 1.30553 1.09374 1.38132
1.36968 0.86135 1.24435 0.96078 0.93683 0.92454 1.69994 1.16080
1.36671 1.22572 0.87875 0.84424 0.83706 0.81915 1.16973 1.17823
1.14162 1.21449 0.93148 0.90423 0.94391 0.91313 0.91958 0.91852
0.93415 0.93546 0.92642 0.92980 0.90615 0.90181 0.92122 0.90472
0.90912 0.91596 0.91392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16
2 C 0.06 0.52 6.66 37.16 0.25 0.77 16
3 O -0.39 -4.66 10.29 -35.23 -0.36 -5.02 16
4 C 0.07 0.85 5.23 37.16 0.19 1.04 16
5 C -0.10 -1.29 3.20 -88.79 -0.28 -1.57 16
6 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16
7 C -0.12 -1.63 6.48 -24.58 -0.16 -1.79 16
8 C 0.12 2.07 6.98 -2.53 -0.02 2.05 16
9 N -1.01 -20.41 3.70 -111.42 -0.41 -20.82 16
10 S 2.69 68.95 4.44 -107.50 -0.48 68.47 16
11 O -1.00 -27.37 15.60 -57.17 -0.89 -28.26 16
12 O -1.01 -27.32 16.41 -57.17 -0.94 -28.26 16
13 C -1.02 -28.81 10.29 30.60 0.31 -28.50 16
14 H 0.12 3.46 8.06 -52.49 -0.42 3.03 16
15 C 0.15 4.44 5.47 -17.82 -0.10 4.35 16
16 N -0.82 -24.01 13.96 55.43 0.77 -23.24 16
17 Si 0.80 20.78 26.54 -169.99 -4.51 16.27 16
18 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16
19 H -0.25 -6.03 7.11 56.52 0.40 -5.63 16
20 H -0.22 -5.80 5.61 56.52 0.32 -5.48 16
21 C 0.13 2.20 6.58 -3.07 -0.02 2.18 16
22 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
27 H 0.06 0.66 8.01 -51.93 -0.42 0.24 16
28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16
30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16
31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
33 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16
34 H 0.07 1.08 7.82 -51.93 -0.41 0.67 16
35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
LS Contribution 301.64 15.07 4.55 4.55
Total: -1.00 -33.14 301.64 -7.24 -40.38
By element:
Atomic # 1 Polarization: 3.71 SS G_CDS: -5.53 Total: -1.82 kcal
Atomic # 6 Polarization: -22.81 SS G_CDS: 0.56 Total: -22.25 kcal
Atomic # 7 Polarization: -44.42 SS G_CDS: 0.36 Total: -44.06 kcal
Atomic # 8 Polarization: -59.35 SS G_CDS: -2.19 Total: -61.54 kcal
Atomic # 14 Polarization: 20.78 SS G_CDS: -4.51 Total: 16.27 kcal
Atomic # 16 Polarization: 68.95 SS G_CDS: -0.48 Total: 68.47 kcal
Total LS contribution 4.55 Total: 4.55 kcal
Total: -33.14 -7.24 -40.38 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000707558569.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.778 kcal
(2) G-P(sol) polarization free energy of solvation -33.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.915 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.156 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds