Wall clock time and date at job start Mon Mar 30 2020 04:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 108.59528 * 2 1 4 4 C 1.47691 * 108.54014 * 117.93833 * 2 1 3 5 5 C 1.54321 * 109.65724 * 181.73629 * 4 2 1 6 6 N 1.44457 * 109.63229 * 290.12785 * 5 4 2 7 7 S 1.65597 * 118.51489 * 269.05483 * 6 5 4 8 8 O 1.42109 * 106.39867 * 156.19552 * 7 6 5 9 9 O 1.42100 * 106.40192 * 23.28187 * 7 6 5 10 10 C 1.76199 * 107.22163 * 269.73591 * 7 6 5 11 11 H 1.07997 * 119.99446 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00104 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99737 * 0.02562 * 12 10 7 14 14 Si 1.86791 * 119.99980 * 180.27760 * 12 10 7 15 15 H 1.48502 * 109.47082 * 179.72487 * 14 12 10 16 16 H 1.48502 * 109.47395 * 299.72380 * 14 12 10 17 17 H 1.48498 * 109.47411 * 59.72909 * 14 12 10 18 18 C 1.48189 * 122.97045 * 88.78283 * 6 5 4 19 19 C 1.54292 * 110.69474 * 319.04943 * 18 6 5 20 20 H 1.09000 * 109.40492 * 200.49553 * 19 18 6 21 21 C 1.53001 * 109.40491 * 80.65460 * 19 18 6 22 22 O 1.40524 * 109.86730 * 320.62063 * 19 18 6 23 23 H 1.09006 * 109.46706 * 178.01405 * 1 2 3 24 24 H 1.09003 * 109.47028 * 298.00466 * 1 2 3 25 25 H 1.08989 * 109.47363 * 58.00986 * 1 2 3 26 26 H 1.09002 * 109.43893 * 301.87570 * 4 2 1 27 27 H 1.08999 * 109.43329 * 61.74571 * 4 2 1 28 28 H 1.09001 * 109.23948 * 170.14516 * 5 4 2 29 29 H 1.08996 * 109.44089 * 50.24204 * 5 4 2 30 30 H 0.97005 * 120.00173 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.23033 * 79.36406 * 18 6 5 32 32 H 1.08999 * 109.23173 * 198.77929 * 18 6 5 33 33 H 1.09005 * 109.46549 * 59.92939 * 21 19 18 34 34 H 1.09000 * 109.46951 * 179.97438 * 21 19 18 35 35 H 1.08993 * 109.47603 * 299.92631 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8776 1.0331 0.0000 4 6 1.9996 -0.6561 1.2371 5 6 3.5419 -0.6313 1.2845 6 7 4.0727 -1.5224 0.2789 7 16 4.3734 -3.0963 0.6967 8 8 4.3331 -3.8463 -0.5097 9 8 3.5451 -3.3797 1.8160 10 6 6.0359 -3.1739 1.2755 11 1 6.6408 -2.2796 1.3014 12 6 6.5640 -4.3760 1.6962 13 7 5.8270 -5.4648 1.6651 14 14 8.3239 -4.4567 2.3170 15 1 8.6458 -5.8515 2.7125 16 1 9.2492 -4.0215 1.2402 17 1 8.4759 -3.5616 3.4921 18 6 4.3548 -1.0931 -1.1111 19 6 3.2359 -0.1681 -1.6338 20 1 3.2544 -0.1575 -2.7236 21 6 3.4621 1.2506 -1.1076 22 8 1.9858 -0.6343 -1.1925 23 1 -0.3633 -1.0271 -0.0356 24 1 -0.3633 0.4825 0.9074 25 1 -0.3633 0.5444 -0.8715 26 1 1.6003 -0.1269 2.1024 27 1 1.6536 -1.6895 1.2533 28 1 3.8761 -0.9549 2.2702 29 1 3.8944 0.3824 1.0949 30 1 6.1987 -6.3107 1.9607 31 1 5.3040 -0.5580 -1.1360 32 1 4.4214 -1.9724 -1.7518 33 1 4.4291 1.6163 -1.4530 34 1 2.6724 1.9051 -1.4766 35 1 3.4453 1.2410 -0.0178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709863367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:41 Heat of formation + Delta-G solvation = -119.381137 kcal Electronic energy + Delta-G solvation = -19753.958213 eV Core-core repulsion = 16686.311593 eV Total energy + Delta-G solvation = -3067.646620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.94829 -35.33211 -34.94461 -33.87299 -33.79047 -33.02683 -30.48502 -28.68830 -26.13554 -25.71758 -23.45744 -21.32792 -19.57421 -18.71800 -17.50843 -17.07712 -16.36676 -15.44493 -15.02498 -14.68460 -14.26828 -14.16157 -13.68800 -13.21415 -13.05124 -12.87247 -12.58457 -12.07816 -11.97334 -11.75305 -11.66349 -11.45570 -11.23952 -11.18844 -11.06237 -10.73168 -10.60293 -10.19242 -10.08347 -10.00801 -9.59339 -9.21592 -9.14842 -8.84486 -8.09509 -6.66280 -5.28950 2.34098 3.09235 3.13649 3.19240 3.97667 4.08594 4.56242 4.66730 4.92771 4.98818 5.11860 5.24971 5.29359 5.41357 5.59260 5.62909 5.74822 5.79345 5.87405 5.90107 5.95309 6.04714 6.13470 6.18886 6.26931 6.28265 6.37047 6.54509 6.75602 6.82800 7.34836 7.64606 7.73442 7.99329 8.91585 10.27053 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.035463 B = 0.007115 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.357088 B = 3934.473641 C = 4134.151443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.171 4.171 5 C 0.124 3.876 6 N -1.000 6.000 7 S 2.715 3.285 8 O -1.005 7.005 9 O -1.003 7.003 10 C -1.024 5.024 11 H 0.100 0.900 12 C 0.133 3.867 13 N -0.846 5.846 14 Si 0.919 3.081 15 H -0.276 1.276 16 H -0.264 1.264 17 H -0.264 1.264 18 C 0.095 3.905 19 C 0.080 3.920 20 H 0.096 0.904 21 C -0.202 4.202 22 O -0.358 6.358 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.291 0.709 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 13.359 -2.864 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.013 3.987 3 H 0.090 0.910 4 C -0.211 4.211 5 C -0.003 4.003 6 N -0.835 5.835 7 S 2.815 3.185 8 O -0.995 6.995 9 O -0.993 6.993 10 C -1.157 5.157 11 H 0.118 0.882 12 C -0.085 4.085 13 N -0.475 5.475 14 Si 0.743 3.257 15 H -0.201 1.201 16 H -0.189 1.189 17 H -0.189 1.189 18 C -0.031 4.031 19 C 0.020 3.980 20 H 0.114 0.886 21 C -0.259 4.259 22 O -0.277 6.277 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.859 12.361 -3.013 13.619 hybrid contribution 1.697 0.341 0.614 1.836 sum -3.163 12.702 -2.398 13.307 Atomic orbital electron populations 1.21919 0.94449 1.02854 1.01561 1.21215 0.94514 0.97098 0.85841 0.90998 1.22032 0.97782 1.03725 0.97549 1.21057 0.92310 0.94809 0.92097 1.57505 1.79734 1.31052 1.15232 1.00559 0.75925 0.69149 0.72845 1.93332 1.89291 1.67798 1.49077 1.93344 1.70361 1.81988 1.53650 1.30651 1.23498 1.01876 1.59645 0.88159 1.24751 0.99978 0.93538 0.90257 1.69897 1.37923 1.00579 1.39145 0.86222 0.81629 0.78039 0.79778 1.20091 1.18885 1.18894 1.22373 0.96799 1.00553 0.83346 1.22295 0.84700 0.92228 0.98757 0.88582 1.22901 1.02389 0.97137 1.03464 1.87522 1.34281 1.65010 1.40845 0.91908 0.91579 0.92549 0.90263 0.89996 0.89843 0.91136 0.89868 0.91870 0.88339 0.91360 0.92004 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.42 37.16 0.35 -1.49 16 2 C 0.07 1.01 2.43 -29.30 -0.07 0.94 16 3 H 0.07 0.86 4.50 -51.93 -0.23 0.63 16 4 C -0.17 -2.77 5.15 -28.61 -0.15 -2.91 16 5 C 0.12 2.17 5.16 -4.44 -0.02 2.14 16 6 N -1.00 -20.76 2.86 -113.07 -0.32 -21.09 16 7 S 2.71 73.94 4.85 -107.50 -0.52 73.42 16 8 O -1.00 -30.19 16.40 -57.17 -0.94 -31.13 16 9 O -1.00 -29.57 16.37 -57.17 -0.94 -30.50 16 10 C -1.02 -28.66 9.75 30.60 0.30 -28.37 16 11 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 12 C 0.13 3.76 5.46 -17.82 -0.10 3.66 16 13 N -0.85 -25.34 13.19 55.43 0.73 -24.61 16 14 Si 0.92 20.80 29.54 -169.99 -5.02 15.78 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 18 C 0.10 1.69 6.19 -2.44 -0.02 1.67 16 19 C 0.08 1.16 3.88 -26.05 -0.10 1.06 16 20 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 21 C -0.20 -2.27 7.53 37.16 0.28 -1.99 16 22 O -0.36 -6.05 9.82 -34.09 -0.33 -6.38 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.08 1.60 7.64 -51.93 -0.40 1.21 16 28 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 29 H 0.07 0.98 5.24 -51.93 -0.27 0.71 16 30 H 0.29 7.84 8.31 -40.82 -0.34 7.50 16 31 H 0.06 0.96 7.97 -51.93 -0.41 0.55 16 32 H 0.10 1.94 6.69 -51.93 -0.35 1.59 16 33 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 34 H 0.06 0.61 7.77 -51.93 -0.40 0.20 16 35 H 0.08 0.94 3.31 -51.93 -0.17 0.77 16 LS Contribution 284.95 15.07 4.29 4.29 Total: -1.00 -35.54 284.95 -7.29 -42.83 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.71 Total: 2.67 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 0.47 Total: -25.28 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.41 Total: -45.70 kcal Atomic # 8 Polarization: -65.80 SS G_CDS: -2.21 Total: -68.01 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 73.94 SS G_CDS: -0.52 Total: 73.42 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -35.54 -7.29 -42.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709863367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.550 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds