Wall clock time and date at job start Mon Mar 30 2020 04:51:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09005 * 108.59528 * 2 1
4 4 C 1.47691 * 108.54014 * 117.93833 * 2 1 3
5 5 C 1.54321 * 109.65724 * 181.73629 * 4 2 1
6 6 N 1.44457 * 109.63229 * 290.12785 * 5 4 2
7 7 S 1.65597 * 118.51489 * 269.05483 * 6 5 4
8 8 O 1.42109 * 106.39867 * 156.19552 * 7 6 5
9 9 O 1.42100 * 106.40192 * 23.28187 * 7 6 5
10 10 C 1.76199 * 107.22163 * 269.73591 * 7 6 5
11 11 H 1.07997 * 119.99446 * 0.02562 * 10 7 6
12 12 C 1.37876 * 120.00104 * 179.97438 * 10 7 6
13 13 N 1.31513 * 119.99737 * 0.02562 * 12 10 7
14 14 Si 1.86791 * 119.99980 * 180.27760 * 12 10 7
15 15 H 1.48502 * 109.47082 * 179.72487 * 14 12 10
16 16 H 1.48502 * 109.47395 * 299.72380 * 14 12 10
17 17 H 1.48498 * 109.47411 * 59.72909 * 14 12 10
18 18 C 1.48189 * 122.97045 * 88.78283 * 6 5 4
19 19 C 1.54292 * 110.69474 * 319.04943 * 18 6 5
20 20 H 1.09000 * 109.40492 * 200.49553 * 19 18 6
21 21 C 1.53001 * 109.40491 * 80.65460 * 19 18 6
22 22 O 1.40524 * 109.86730 * 320.62063 * 19 18 6
23 23 H 1.09006 * 109.46706 * 178.01405 * 1 2 3
24 24 H 1.09003 * 109.47028 * 298.00466 * 1 2 3
25 25 H 1.08989 * 109.47363 * 58.00986 * 1 2 3
26 26 H 1.09002 * 109.43893 * 301.87570 * 4 2 1
27 27 H 1.08999 * 109.43329 * 61.74571 * 4 2 1
28 28 H 1.09001 * 109.23948 * 170.14516 * 5 4 2
29 29 H 1.08996 * 109.44089 * 50.24204 * 5 4 2
30 30 H 0.97005 * 120.00173 * 179.97438 * 13 12 10
31 31 H 1.09003 * 109.23033 * 79.36406 * 18 6 5
32 32 H 1.08999 * 109.23173 * 198.77929 * 18 6 5
33 33 H 1.09005 * 109.46549 * 59.92939 * 21 19 18
34 34 H 1.09000 * 109.46951 * 179.97438 * 21 19 18
35 35 H 1.08993 * 109.47603 * 299.92631 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8776 1.0331 0.0000
4 6 1.9996 -0.6561 1.2371
5 6 3.5419 -0.6313 1.2845
6 7 4.0727 -1.5224 0.2789
7 16 4.3734 -3.0963 0.6967
8 8 4.3331 -3.8463 -0.5097
9 8 3.5451 -3.3797 1.8160
10 6 6.0359 -3.1739 1.2755
11 1 6.6408 -2.2796 1.3014
12 6 6.5640 -4.3760 1.6962
13 7 5.8270 -5.4648 1.6651
14 14 8.3239 -4.4567 2.3170
15 1 8.6458 -5.8515 2.7125
16 1 9.2492 -4.0215 1.2402
17 1 8.4759 -3.5616 3.4921
18 6 4.3548 -1.0931 -1.1111
19 6 3.2359 -0.1681 -1.6338
20 1 3.2544 -0.1575 -2.7236
21 6 3.4621 1.2506 -1.1076
22 8 1.9858 -0.6343 -1.1925
23 1 -0.3633 -1.0271 -0.0356
24 1 -0.3633 0.4825 0.9074
25 1 -0.3633 0.5444 -0.8715
26 1 1.6003 -0.1269 2.1024
27 1 1.6536 -1.6895 1.2533
28 1 3.8761 -0.9549 2.2702
29 1 3.8944 0.3824 1.0949
30 1 6.1987 -6.3107 1.9607
31 1 5.3040 -0.5580 -1.1360
32 1 4.4214 -1.9724 -1.7518
33 1 4.4291 1.6163 -1.4530
34 1 2.6724 1.9051 -1.4766
35 1 3.4453 1.2410 -0.0178
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000709863367.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:51:41
Heat of formation + Delta-G solvation = -119.381137 kcal
Electronic energy + Delta-G solvation = -19753.958213 eV
Core-core repulsion = 16686.311593 eV
Total energy + Delta-G solvation = -3067.646620 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.94829 -35.33211 -34.94461 -33.87299 -33.79047 -33.02683 -30.48502 -28.68830
-26.13554 -25.71758 -23.45744 -21.32792 -19.57421 -18.71800 -17.50843 -17.07712
-16.36676 -15.44493 -15.02498 -14.68460 -14.26828 -14.16157 -13.68800 -13.21415
-13.05124 -12.87247 -12.58457 -12.07816 -11.97334 -11.75305 -11.66349 -11.45570
-11.23952 -11.18844 -11.06237 -10.73168 -10.60293 -10.19242 -10.08347 -10.00801
-9.59339 -9.21592 -9.14842 -8.84486 -8.09509 -6.66280 -5.28950 2.34098
3.09235 3.13649 3.19240 3.97667 4.08594 4.56242 4.66730 4.92771
4.98818 5.11860 5.24971 5.29359 5.41357 5.59260 5.62909 5.74822
5.79345 5.87405 5.90107 5.95309 6.04714 6.13470 6.18886 6.26931
6.28265 6.37047 6.54509 6.75602 6.82800 7.34836 7.64606 7.73442
7.99329 8.91585 10.27053
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.035463 B = 0.007115 C = 0.006771
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 789.357088 B = 3934.473641 C = 4134.151443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.070 3.930
3 H 0.072 0.928
4 C -0.171 4.171
5 C 0.124 3.876
6 N -1.000 6.000
7 S 2.715 3.285
8 O -1.005 7.005
9 O -1.003 7.003
10 C -1.024 5.024
11 H 0.100 0.900
12 C 0.133 3.867
13 N -0.846 5.846
14 Si 0.919 3.081
15 H -0.276 1.276
16 H -0.264 1.264
17 H -0.264 1.264
18 C 0.095 3.905
19 C 0.080 3.920
20 H 0.096 0.904
21 C -0.202 4.202
22 O -0.358 6.358
23 H 0.062 0.938
24 H 0.065 0.935
25 H 0.055 0.945
26 H 0.079 0.921
27 H 0.081 0.919
28 H 0.083 0.917
29 H 0.071 0.929
30 H 0.291 0.709
31 H 0.063 0.937
32 H 0.098 0.902
33 H 0.067 0.933
34 H 0.061 0.939
35 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.069 13.359 -2.864 14.255
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.013 3.987
3 H 0.090 0.910
4 C -0.211 4.211
5 C -0.003 4.003
6 N -0.835 5.835
7 S 2.815 3.185
8 O -0.995 6.995
9 O -0.993 6.993
10 C -1.157 5.157
11 H 0.118 0.882
12 C -0.085 4.085
13 N -0.475 5.475
14 Si 0.743 3.257
15 H -0.201 1.201
16 H -0.189 1.189
17 H -0.189 1.189
18 C -0.031 4.031
19 C 0.020 3.980
20 H 0.114 0.886
21 C -0.259 4.259
22 O -0.277 6.277
23 H 0.081 0.919
24 H 0.084 0.916
25 H 0.075 0.925
26 H 0.097 0.903
27 H 0.100 0.900
28 H 0.102 0.898
29 H 0.089 0.911
30 H 0.101 0.899
31 H 0.081 0.919
32 H 0.117 0.883
33 H 0.086 0.914
34 H 0.080 0.920
35 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -4.859 12.361 -3.013 13.619
hybrid contribution 1.697 0.341 0.614 1.836
sum -3.163 12.702 -2.398 13.307
Atomic orbital electron populations
1.21919 0.94449 1.02854 1.01561 1.21215 0.94514 0.97098 0.85841
0.90998 1.22032 0.97782 1.03725 0.97549 1.21057 0.92310 0.94809
0.92097 1.57505 1.79734 1.31052 1.15232 1.00559 0.75925 0.69149
0.72845 1.93332 1.89291 1.67798 1.49077 1.93344 1.70361 1.81988
1.53650 1.30651 1.23498 1.01876 1.59645 0.88159 1.24751 0.99978
0.93538 0.90257 1.69897 1.37923 1.00579 1.39145 0.86222 0.81629
0.78039 0.79778 1.20091 1.18885 1.18894 1.22373 0.96799 1.00553
0.83346 1.22295 0.84700 0.92228 0.98757 0.88582 1.22901 1.02389
0.97137 1.03464 1.87522 1.34281 1.65010 1.40845 0.91908 0.91579
0.92549 0.90263 0.89996 0.89843 0.91136 0.89868 0.91870 0.88339
0.91360 0.92004 0.90013
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.84 9.42 37.16 0.35 -1.49 16
2 C 0.07 1.01 2.43 -29.30 -0.07 0.94 16
3 H 0.07 0.86 4.50 -51.93 -0.23 0.63 16
4 C -0.17 -2.77 5.15 -28.61 -0.15 -2.91 16
5 C 0.12 2.17 5.16 -4.44 -0.02 2.14 16
6 N -1.00 -20.76 2.86 -113.07 -0.32 -21.09 16
7 S 2.71 73.94 4.85 -107.50 -0.52 73.42 16
8 O -1.00 -30.19 16.40 -57.17 -0.94 -31.13 16
9 O -1.00 -29.57 16.37 -57.17 -0.94 -30.50 16
10 C -1.02 -28.66 9.75 30.60 0.30 -28.37 16
11 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16
12 C 0.13 3.76 5.46 -17.82 -0.10 3.66 16
13 N -0.85 -25.34 13.19 55.43 0.73 -24.61 16
14 Si 0.92 20.80 29.54 -169.99 -5.02 15.78 16
15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16
16 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16
17 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16
18 C 0.10 1.69 6.19 -2.44 -0.02 1.67 16
19 C 0.08 1.16 3.88 -26.05 -0.10 1.06 16
20 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16
21 C -0.20 -2.27 7.53 37.16 0.28 -1.99 16
22 O -0.36 -6.05 9.82 -34.09 -0.33 -6.38 16
23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
24 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16
25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16
27 H 0.08 1.60 7.64 -51.93 -0.40 1.21 16
28 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16
29 H 0.07 0.98 5.24 -51.93 -0.27 0.71 16
30 H 0.29 7.84 8.31 -40.82 -0.34 7.50 16
31 H 0.06 0.96 7.97 -51.93 -0.41 0.55 16
32 H 0.10 1.94 6.69 -51.93 -0.35 1.59 16
33 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16
34 H 0.06 0.61 7.77 -51.93 -0.40 0.20 16
35 H 0.08 0.94 3.31 -51.93 -0.17 0.77 16
LS Contribution 284.95 15.07 4.29 4.29
Total: -1.00 -35.54 284.95 -7.29 -42.83
By element:
Atomic # 1 Polarization: 7.38 SS G_CDS: -4.71 Total: 2.67 kcal
Atomic # 6 Polarization: -25.75 SS G_CDS: 0.47 Total: -25.28 kcal
Atomic # 7 Polarization: -46.11 SS G_CDS: 0.41 Total: -45.70 kcal
Atomic # 8 Polarization: -65.80 SS G_CDS: -2.21 Total: -68.01 kcal
Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal
Atomic # 16 Polarization: 73.94 SS G_CDS: -0.52 Total: 73.42 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -35.54 -7.29 -42.83 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709863367.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -76.550 kcal
(2) G-P(sol) polarization free energy of solvation -35.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.381 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds