Wall clock time and date at job start Mon Mar 30 2020 04:51:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09005 * 108.59528 * 2 1
4 4 C 1.47691 * 108.54014 * 117.93833 * 2 1 3
5 5 C 1.54321 * 109.65724 * 181.73629 * 4 2 1
6 6 N 1.44457 * 109.63229 * 290.12785 * 5 4 2
7 7 S 1.65597 * 118.51489 * 269.05483 * 6 5 4
8 8 O 1.42109 * 106.39867 * 156.19552 * 7 6 5
9 9 O 1.42100 * 106.40192 * 23.28187 * 7 6 5
10 10 C 1.76199 * 107.22163 * 269.73591 * 7 6 5
11 11 H 1.07997 * 119.99446 * 0.02562 * 10 7 6
12 12 C 1.37876 * 120.00104 * 179.97438 * 10 7 6
13 13 N 1.31513 * 119.99737 * 0.02562 * 12 10 7
14 14 Si 1.86791 * 119.99980 * 180.27760 * 12 10 7
15 15 H 1.48502 * 109.47082 * 179.72487 * 14 12 10
16 16 H 1.48502 * 109.47395 * 299.72380 * 14 12 10
17 17 H 1.48498 * 109.47411 * 59.72909 * 14 12 10
18 18 C 1.48189 * 122.97045 * 88.78283 * 6 5 4
19 19 C 1.54292 * 110.69474 * 319.04943 * 18 6 5
20 20 H 1.09000 * 109.40492 * 200.49553 * 19 18 6
21 21 C 1.53001 * 109.40491 * 80.65460 * 19 18 6
22 22 O 1.40524 * 109.86730 * 320.62063 * 19 18 6
23 23 H 1.09006 * 109.46706 * 178.01405 * 1 2 3
24 24 H 1.09003 * 109.47028 * 298.00466 * 1 2 3
25 25 H 1.08989 * 109.47363 * 58.00986 * 1 2 3
26 26 H 1.09002 * 109.43893 * 301.87570 * 4 2 1
27 27 H 1.08999 * 109.43329 * 61.74571 * 4 2 1
28 28 H 1.09001 * 109.23948 * 170.14516 * 5 4 2
29 29 H 1.08996 * 109.44089 * 50.24204 * 5 4 2
30 30 H 0.97005 * 120.00173 * 179.97438 * 13 12 10
31 31 H 1.09003 * 109.23033 * 79.36406 * 18 6 5
32 32 H 1.08999 * 109.23173 * 198.77929 * 18 6 5
33 33 H 1.09005 * 109.46549 * 59.92939 * 21 19 18
34 34 H 1.09000 * 109.46951 * 179.97438 * 21 19 18
35 35 H 1.08993 * 109.47603 * 299.92631 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8776 1.0331 0.0000
4 6 1.9996 -0.6561 1.2371
5 6 3.5419 -0.6313 1.2845
6 7 4.0727 -1.5224 0.2789
7 16 4.3734 -3.0963 0.6967
8 8 4.3331 -3.8463 -0.5097
9 8 3.5451 -3.3797 1.8160
10 6 6.0359 -3.1739 1.2755
11 1 6.6408 -2.2796 1.3014
12 6 6.5640 -4.3760 1.6962
13 7 5.8270 -5.4648 1.6651
14 14 8.3239 -4.4567 2.3170
15 1 8.6458 -5.8515 2.7125
16 1 9.2492 -4.0215 1.2402
17 1 8.4759 -3.5616 3.4921
18 6 4.3548 -1.0931 -1.1111
19 6 3.2359 -0.1681 -1.6338
20 1 3.2544 -0.1575 -2.7236
21 6 3.4621 1.2506 -1.1076
22 8 1.9858 -0.6343 -1.1925
23 1 -0.3633 -1.0271 -0.0356
24 1 -0.3633 0.4825 0.9074
25 1 -0.3633 0.5444 -0.8715
26 1 1.6003 -0.1269 2.1024
27 1 1.6536 -1.6895 1.2533
28 1 3.8761 -0.9549 2.2702
29 1 3.8944 0.3824 1.0949
30 1 6.1987 -6.3107 1.9607
31 1 5.3040 -0.5580 -1.1360
32 1 4.4214 -1.9724 -1.7518
33 1 4.4291 1.6163 -1.4530
34 1 2.6724 1.9051 -1.4766
35 1 3.4453 1.2410 -0.0178
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000709863367.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:51:40
Heat of formation + Delta-G solvation = -147.913688 kcal
Electronic energy + Delta-G solvation = -19755.195478 eV
Core-core repulsion = 16686.311593 eV
Total energy + Delta-G solvation = -3068.883885 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.14466 -37.49888 -36.45490 -36.09256 -35.16735 -35.00663 -31.60297 -29.90000
-28.28518 -27.00272 -24.62705 -22.75110 -20.79149 -20.68209 -19.04683 -18.58011
-18.34097 -17.22539 -16.41920 -16.28584 -15.95658 -15.80219 -15.20710 -14.77574
-14.33077 -14.17038 -13.97778 -13.63198 -13.39728 -13.06271 -13.01232 -12.94113
-12.76796 -12.73154 -12.59718 -12.46247 -12.33395 -12.24650 -11.90476 -11.42908
-11.25490 -10.98979 -10.76914 -10.37722 -9.69286 -8.75383 -7.51206 0.33453
1.31634 1.34371 1.47570 2.19197 2.55861 2.73239 3.03101 3.75695
3.83216 3.85365 3.95336 4.12646 4.19487 4.28335 4.42380 4.45249
4.52742 4.64449 4.73728 4.78811 4.83635 4.85838 4.96813 5.04263
5.12940 5.21208 5.24110 5.32656 5.37016 5.48935 5.87358 6.11646
6.56529 6.75343 8.19283
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.035463 B = 0.007115 C = 0.006771
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 789.357088 B = 3934.473641 C = 4134.151443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.061 3.939
3 H 0.109 0.891
4 C -0.171 4.171
5 C 0.112 3.888
6 N -0.994 5.994
7 S 2.712 3.288
8 O -1.048 7.048
9 O -1.040 7.040
10 C -1.043 5.043
11 H 0.120 0.880
12 C 0.067 3.933
13 N -0.897 5.897
14 Si 0.992 3.008
15 H -0.264 1.264
16 H -0.249 1.249
17 H -0.248 1.248
18 C 0.083 3.917
19 C 0.077 3.923
20 H 0.116 0.884
21 C -0.195 4.195
22 O -0.389 6.389
23 H 0.037 0.963
24 H 0.091 0.909
25 H 0.071 0.929
26 H 0.113 0.887
27 H 0.034 0.966
28 H 0.067 0.933
29 H 0.118 0.882
30 H 0.299 0.701
31 H 0.092 0.908
32 H 0.066 0.934
33 H 0.088 0.912
34 H 0.084 0.916
35 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.889 16.588 -2.729 17.057
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.004 3.996
3 H 0.126 0.874
4 C -0.211 4.211
5 C -0.014 4.014
6 N -0.832 5.832
7 S 2.814 3.186
8 O -1.038 7.038
9 O -1.030 7.030
10 C -1.176 5.176
11 H 0.138 0.862
12 C -0.146 4.146
13 N -0.529 5.529
14 Si 0.810 3.190
15 H -0.188 1.188
16 H -0.172 1.172
17 H -0.171 1.171
18 C -0.042 4.042
19 C 0.017 3.983
20 H 0.133 0.867
21 C -0.251 4.251
22 O -0.308 6.308
23 H 0.056 0.944
24 H 0.110 0.890
25 H 0.090 0.910
26 H 0.131 0.869
27 H 0.053 0.947
28 H 0.085 0.915
29 H 0.135 0.865
30 H 0.109 0.891
31 H 0.110 0.890
32 H 0.085 0.915
33 H 0.107 0.893
34 H 0.103 0.897
35 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -3.706 15.595 -2.886 16.287
hybrid contribution 1.264 -0.615 0.531 1.503
sum -2.442 14.980 -2.355 15.359
Atomic orbital electron populations
1.21935 0.93149 1.01861 1.03596 1.21471 0.95677 0.98340 0.84066
0.87362 1.22090 0.96867 1.01665 1.00439 1.21438 0.93318 0.96195
0.90437 1.56987 1.79904 1.29125 1.17187 1.00222 0.75923 0.70715
0.71733 1.93264 1.89700 1.70489 1.50341 1.93280 1.71214 1.83699
1.54838 1.31001 1.24055 1.02989 1.59575 0.86183 1.26107 1.05579
0.92864 0.90040 1.70009 1.40604 1.01659 1.40606 0.85141 0.74853
0.79098 0.79943 1.18766 1.17208 1.17142 1.22736 1.00034 1.00443
0.81004 1.22469 0.82621 0.93327 0.99852 0.86677 1.22822 1.04476
0.94726 1.03088 1.87518 1.35189 1.66297 1.41804 0.94413 0.89041
0.91040 0.86871 0.94747 0.91509 0.86459 0.89130 0.88970 0.91530
0.89293 0.89736 0.90228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.35 9.42 71.98 0.68 -2.67 16
2 C 0.06 1.61 2.43 28.93 0.07 1.68 16
3 H 0.11 2.09 4.50 -2.38 -0.01 2.08 16
4 C -0.17 -5.39 5.15 29.38 0.15 -5.24 16
5 C 0.11 3.77 5.16 87.21 0.45 4.22 16
6 N -0.99 -41.44 2.86 -511.64 -1.46 -42.91 16
7 S 2.71 153.84 4.85 -56.49 -0.27 153.57 16
8 O -1.05 -66.51 16.40 -128.00 -2.10 -68.61 16
9 O -1.04 -64.62 16.37 -128.00 -2.09 -66.72 16
10 C -1.04 -59.20 9.75 67.73 0.66 -58.54 16
11 H 0.12 6.07 7.81 -2.91 -0.02 6.05 16
12 C 0.07 3.80 5.46 84.65 0.46 4.26 16
13 N -0.90 -55.46 13.19 21.45 0.28 -55.18 16
14 Si 0.99 41.91 29.54 68.60 2.03 43.94 16
15 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16
16 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16
17 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16
18 C 0.08 2.88 6.19 86.49 0.54 3.42 16
19 C 0.08 2.06 3.88 31.03 0.12 2.18 16
20 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16
21 C -0.19 -3.44 7.53 71.98 0.54 -2.89 16
22 O -0.39 -12.70 9.82 -144.91 -1.42 -14.12 16
23 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16
24 H 0.09 1.57 8.13 -2.39 -0.02 1.55 16
25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
26 H 0.11 2.71 8.13 -2.39 -0.02 2.69 16
27 H 0.03 1.40 7.64 -2.39 -0.02 1.38 16
28 H 0.07 2.46 7.58 -2.39 -0.02 2.44 16
29 H 0.12 2.86 5.24 -2.39 -0.01 2.85 16
30 H 0.30 16.57 8.31 -92.70 -0.77 15.80 16
31 H 0.09 2.61 7.97 -2.39 -0.02 2.59 16
32 H 0.07 2.71 6.69 -2.39 -0.02 2.70 16
33 H 0.09 1.25 8.13 -2.38 -0.02 1.23 16
34 H 0.08 1.18 7.77 -2.39 -0.02 1.16 16
35 H 0.08 1.42 3.31 -2.39 -0.01 1.41 16
Total: -1.00 -82.32 284.95 -0.28 -82.61
By element:
Atomic # 1 Polarization: 19.91 SS G_CDS: 1.09 Total: 21.00 kcal
Atomic # 6 Polarization: -57.25 SS G_CDS: 3.67 Total: -53.58 kcal
Atomic # 7 Polarization: -96.90 SS G_CDS: -1.18 Total: -98.09 kcal
Atomic # 8 Polarization: -143.83 SS G_CDS: -5.62 Total: -149.45 kcal
Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal
Atomic # 16 Polarization: 153.84 SS G_CDS: -0.27 Total: 153.57 kcal
Total: -82.32 -0.28 -82.61 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709863367.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.308 kcal
(2) G-P(sol) polarization free energy of solvation -82.321 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.605 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.914 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds