Wall clock time and date at job start Mon Mar 30 2020 04:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 108.59528 * 2 1 4 4 C 1.47691 * 108.54014 * 117.93833 * 2 1 3 5 5 C 1.54321 * 109.65724 * 181.73629 * 4 2 1 6 6 N 1.44457 * 109.63229 * 290.12785 * 5 4 2 7 7 S 1.65597 * 118.51489 * 269.05483 * 6 5 4 8 8 O 1.42109 * 106.39867 * 156.19552 * 7 6 5 9 9 O 1.42100 * 106.40192 * 23.28187 * 7 6 5 10 10 C 1.76199 * 107.22163 * 269.73591 * 7 6 5 11 11 H 1.07997 * 119.99446 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00104 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99737 * 0.02562 * 12 10 7 14 14 Si 1.86791 * 119.99980 * 180.27760 * 12 10 7 15 15 H 1.48502 * 109.47082 * 179.72487 * 14 12 10 16 16 H 1.48502 * 109.47395 * 299.72380 * 14 12 10 17 17 H 1.48498 * 109.47411 * 59.72909 * 14 12 10 18 18 C 1.48189 * 122.97045 * 88.78283 * 6 5 4 19 19 C 1.54292 * 110.69474 * 319.04943 * 18 6 5 20 20 H 1.09000 * 109.40492 * 200.49553 * 19 18 6 21 21 C 1.53001 * 109.40491 * 80.65460 * 19 18 6 22 22 O 1.40524 * 109.86730 * 320.62063 * 19 18 6 23 23 H 1.09006 * 109.46706 * 178.01405 * 1 2 3 24 24 H 1.09003 * 109.47028 * 298.00466 * 1 2 3 25 25 H 1.08989 * 109.47363 * 58.00986 * 1 2 3 26 26 H 1.09002 * 109.43893 * 301.87570 * 4 2 1 27 27 H 1.08999 * 109.43329 * 61.74571 * 4 2 1 28 28 H 1.09001 * 109.23948 * 170.14516 * 5 4 2 29 29 H 1.08996 * 109.44089 * 50.24204 * 5 4 2 30 30 H 0.97005 * 120.00173 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.23033 * 79.36406 * 18 6 5 32 32 H 1.08999 * 109.23173 * 198.77929 * 18 6 5 33 33 H 1.09005 * 109.46549 * 59.92939 * 21 19 18 34 34 H 1.09000 * 109.46951 * 179.97438 * 21 19 18 35 35 H 1.08993 * 109.47603 * 299.92631 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8776 1.0331 0.0000 4 6 1.9996 -0.6561 1.2371 5 6 3.5419 -0.6313 1.2845 6 7 4.0727 -1.5224 0.2789 7 16 4.3734 -3.0963 0.6967 8 8 4.3331 -3.8463 -0.5097 9 8 3.5451 -3.3797 1.8160 10 6 6.0359 -3.1739 1.2755 11 1 6.6408 -2.2796 1.3014 12 6 6.5640 -4.3760 1.6962 13 7 5.8270 -5.4648 1.6651 14 14 8.3239 -4.4567 2.3170 15 1 8.6458 -5.8515 2.7125 16 1 9.2492 -4.0215 1.2402 17 1 8.4759 -3.5616 3.4921 18 6 4.3548 -1.0931 -1.1111 19 6 3.2359 -0.1681 -1.6338 20 1 3.2544 -0.1575 -2.7236 21 6 3.4621 1.2506 -1.1076 22 8 1.9858 -0.6343 -1.1925 23 1 -0.3633 -1.0271 -0.0356 24 1 -0.3633 0.4825 0.9074 25 1 -0.3633 0.5444 -0.8715 26 1 1.6003 -0.1269 2.1024 27 1 1.6536 -1.6895 1.2533 28 1 3.8761 -0.9549 2.2702 29 1 3.8944 0.3824 1.0949 30 1 6.1987 -6.3107 1.9607 31 1 5.3040 -0.5580 -1.1360 32 1 4.4214 -1.9724 -1.7518 33 1 4.4291 1.6163 -1.4530 34 1 2.6724 1.9051 -1.4766 35 1 3.4453 1.2410 -0.0178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709863367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:40 Heat of formation + Delta-G solvation = -147.913688 kcal Electronic energy + Delta-G solvation = -19755.195478 eV Core-core repulsion = 16686.311593 eV Total energy + Delta-G solvation = -3068.883885 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.14466 -37.49888 -36.45490 -36.09256 -35.16735 -35.00663 -31.60297 -29.90000 -28.28518 -27.00272 -24.62705 -22.75110 -20.79149 -20.68209 -19.04683 -18.58011 -18.34097 -17.22539 -16.41920 -16.28584 -15.95658 -15.80219 -15.20710 -14.77574 -14.33077 -14.17038 -13.97778 -13.63198 -13.39728 -13.06271 -13.01232 -12.94113 -12.76796 -12.73154 -12.59718 -12.46247 -12.33395 -12.24650 -11.90476 -11.42908 -11.25490 -10.98979 -10.76914 -10.37722 -9.69286 -8.75383 -7.51206 0.33453 1.31634 1.34371 1.47570 2.19197 2.55861 2.73239 3.03101 3.75695 3.83216 3.85365 3.95336 4.12646 4.19487 4.28335 4.42380 4.45249 4.52742 4.64449 4.73728 4.78811 4.83635 4.85838 4.96813 5.04263 5.12940 5.21208 5.24110 5.32656 5.37016 5.48935 5.87358 6.11646 6.56529 6.75343 8.19283 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.035463 B = 0.007115 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.357088 B = 3934.473641 C = 4134.151443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.061 3.939 3 H 0.109 0.891 4 C -0.171 4.171 5 C 0.112 3.888 6 N -0.994 5.994 7 S 2.712 3.288 8 O -1.048 7.048 9 O -1.040 7.040 10 C -1.043 5.043 11 H 0.120 0.880 12 C 0.067 3.933 13 N -0.897 5.897 14 Si 0.992 3.008 15 H -0.264 1.264 16 H -0.249 1.249 17 H -0.248 1.248 18 C 0.083 3.917 19 C 0.077 3.923 20 H 0.116 0.884 21 C -0.195 4.195 22 O -0.389 6.389 23 H 0.037 0.963 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.299 0.701 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 16.588 -2.729 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.004 3.996 3 H 0.126 0.874 4 C -0.211 4.211 5 C -0.014 4.014 6 N -0.832 5.832 7 S 2.814 3.186 8 O -1.038 7.038 9 O -1.030 7.030 10 C -1.176 5.176 11 H 0.138 0.862 12 C -0.146 4.146 13 N -0.529 5.529 14 Si 0.810 3.190 15 H -0.188 1.188 16 H -0.172 1.172 17 H -0.171 1.171 18 C -0.042 4.042 19 C 0.017 3.983 20 H 0.133 0.867 21 C -0.251 4.251 22 O -0.308 6.308 23 H 0.056 0.944 24 H 0.110 0.890 25 H 0.090 0.910 26 H 0.131 0.869 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.135 0.865 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.706 15.595 -2.886 16.287 hybrid contribution 1.264 -0.615 0.531 1.503 sum -2.442 14.980 -2.355 15.359 Atomic orbital electron populations 1.21935 0.93149 1.01861 1.03596 1.21471 0.95677 0.98340 0.84066 0.87362 1.22090 0.96867 1.01665 1.00439 1.21438 0.93318 0.96195 0.90437 1.56987 1.79904 1.29125 1.17187 1.00222 0.75923 0.70715 0.71733 1.93264 1.89700 1.70489 1.50341 1.93280 1.71214 1.83699 1.54838 1.31001 1.24055 1.02989 1.59575 0.86183 1.26107 1.05579 0.92864 0.90040 1.70009 1.40604 1.01659 1.40606 0.85141 0.74853 0.79098 0.79943 1.18766 1.17208 1.17142 1.22736 1.00034 1.00443 0.81004 1.22469 0.82621 0.93327 0.99852 0.86677 1.22822 1.04476 0.94726 1.03088 1.87518 1.35189 1.66297 1.41804 0.94413 0.89041 0.91040 0.86871 0.94747 0.91509 0.86459 0.89130 0.88970 0.91530 0.89293 0.89736 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.42 71.98 0.68 -2.67 16 2 C 0.06 1.61 2.43 28.93 0.07 1.68 16 3 H 0.11 2.09 4.50 -2.38 -0.01 2.08 16 4 C -0.17 -5.39 5.15 29.38 0.15 -5.24 16 5 C 0.11 3.77 5.16 87.21 0.45 4.22 16 6 N -0.99 -41.44 2.86 -511.64 -1.46 -42.91 16 7 S 2.71 153.84 4.85 -56.49 -0.27 153.57 16 8 O -1.05 -66.51 16.40 -128.00 -2.10 -68.61 16 9 O -1.04 -64.62 16.37 -128.00 -2.09 -66.72 16 10 C -1.04 -59.20 9.75 67.73 0.66 -58.54 16 11 H 0.12 6.07 7.81 -2.91 -0.02 6.05 16 12 C 0.07 3.80 5.46 84.65 0.46 4.26 16 13 N -0.90 -55.46 13.19 21.45 0.28 -55.18 16 14 Si 0.99 41.91 29.54 68.60 2.03 43.94 16 15 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 16 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 17 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 18 C 0.08 2.88 6.19 86.49 0.54 3.42 16 19 C 0.08 2.06 3.88 31.03 0.12 2.18 16 20 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 21 C -0.19 -3.44 7.53 71.98 0.54 -2.89 16 22 O -0.39 -12.70 9.82 -144.91 -1.42 -14.12 16 23 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.09 1.57 8.13 -2.39 -0.02 1.55 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.11 2.71 8.13 -2.39 -0.02 2.69 16 27 H 0.03 1.40 7.64 -2.39 -0.02 1.38 16 28 H 0.07 2.46 7.58 -2.39 -0.02 2.44 16 29 H 0.12 2.86 5.24 -2.39 -0.01 2.85 16 30 H 0.30 16.57 8.31 -92.70 -0.77 15.80 16 31 H 0.09 2.61 7.97 -2.39 -0.02 2.59 16 32 H 0.07 2.71 6.69 -2.39 -0.02 2.70 16 33 H 0.09 1.25 8.13 -2.38 -0.02 1.23 16 34 H 0.08 1.18 7.77 -2.39 -0.02 1.16 16 35 H 0.08 1.42 3.31 -2.39 -0.01 1.41 16 Total: -1.00 -82.32 284.95 -0.28 -82.61 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.09 Total: 21.00 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 3.67 Total: -53.58 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -1.18 Total: -98.09 kcal Atomic # 8 Polarization: -143.83 SS G_CDS: -5.62 Total: -149.45 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 153.84 SS G_CDS: -0.27 Total: 153.57 kcal Total: -82.32 -0.28 -82.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709863367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.308 kcal (2) G-P(sol) polarization free energy of solvation -82.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds