Wall clock time and date at job start Mon Mar 30 2020 04:28:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 H 1.09000 * 110.33110 * 307.24774 * 3 2 1
5 5 C 1.54481 * 110.37094 * 184.99935 * 3 2 1
6 6 C 1.54508 * 104.06026 * 217.18800 * 5 3 2
7 7 H 1.08999 * 110.51312 * 241.35528 * 6 5 3
8 8 N 1.46497 * 110.51306 * 118.78454 * 6 5 3
9 9 C 1.46499 * 119.99869 * 300.00056 * 8 6 5
10 10 S 1.65594 * 120.00401 * 119.99824 * 8 6 5
11 11 O 1.42105 * 106.40474 * 203.54355 * 10 8 6
12 12 O 1.42103 * 106.40404 * 336.45972 * 10 8 6
13 13 C 1.76194 * 107.22066 * 89.99959 * 10 8 6
14 14 H 1.08000 * 119.99692 * 0.02562 * 13 10 8
15 15 C 1.37877 * 120.00599 * 180.02562 * 13 10 8
16 16 N 1.31515 * 120.00432 * 180.02562 * 15 13 10
17 17 Si 1.86802 * 119.99551 * 359.97438 * 15 13 10
18 18 H 1.48509 * 109.46987 * 90.00330 * 17 15 13
19 19 H 1.48500 * 109.47282 * 209.99885 * 17 15 13
20 20 H 1.48501 * 109.47525 * 330.00355 * 17 15 13
21 21 C 1.54476 * 104.06562 * 359.97438 * 6 5 3
22 22 O 1.44421 * 110.37184 * 69.61645 * 3 2 1
23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3
25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3
26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3
27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3
28 28 H 1.09004 * 110.51411 * 335.83185 * 5 3 2
29 29 H 1.09002 * 110.50985 * 98.40762 * 5 3 2
30 30 H 1.09001 * 109.47523 * 89.99531 * 9 8 6
31 31 H 1.09005 * 109.47289 * 210.00058 * 9 8 6
32 32 H 1.09003 * 109.47134 * 329.99985 * 9 8 6
33 33 H 0.97003 * 119.99926 * 179.97438 * 16 15 13
34 34 H 1.08998 * 110.37613 * 142.80833 * 21 6 5
35 35 H 1.08998 * 110.37471 * 265.15052 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5830 2.0058 -0.8136
5 6 3.5794 1.4687 -0.1262
6 6 4.0107 2.6420 0.7818
7 1 4.5193 3.4095 0.1984
8 7 4.8757 2.1635 1.8630
9 6 4.3766 1.1668 2.8136
10 16 6.4176 2.7489 2.0105
11 8 7.1539 1.7652 2.7244
12 8 6.7935 3.2185 0.7230
13 6 6.3397 4.1666 3.0538
14 1 5.3912 4.4879 3.4583
15 6 7.4894 4.8659 3.3539
16 7 7.4313 5.9238 4.1331
17 14 9.1300 4.3098 2.6548
18 1 9.3627 4.9761 1.3481
19 1 10.2186 4.6742 3.5969
20 1 9.1131 2.8373 2.4635
21 6 2.6808 3.1865 1.3487
22 8 1.7630 2.0737 1.2691
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 0.5139 0.8900
26 1 1.8934 -0.5137 0.8900
27 1 1.8934 -0.5138 -0.8899
28 1 4.0079 0.5321 0.2307
29 1 3.8749 1.6536 -1.1590
30 1 4.5969 0.1666 2.4407
31 1 4.8625 1.3100 3.7788
32 1 3.2988 1.2823 2.9288
33 1 8.2403 6.4155 4.3445
34 1 2.8094 3.4982 2.3852
35 1 2.3225 4.0187 0.7429
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000711202891.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:28:52
Heat of formation + Delta-G solvation = -152.877952 kcal
Electronic energy + Delta-G solvation = -19215.195464 eV
Core-core repulsion = 16146.096313 eV
Total energy + Delta-G solvation = -3069.099151 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.78037 -37.76543 -36.61780 -36.49129 -35.19735 -34.38647 -31.69495 -29.02105
-28.55624 -26.93282 -24.48742 -22.26784 -21.74750 -20.62762 -19.36003 -18.79520
-17.48114 -17.31549 -16.85699 -16.50942 -16.13239 -15.63231 -15.21351 -14.98222
-14.62281 -14.45883 -14.13314 -13.85000 -13.49852 -13.44997 -13.17604 -13.03357
-12.78578 -12.71034 -12.57442 -12.34963 -12.27116 -12.12310 -11.73879 -11.68944
-11.48508 -11.35279 -11.20840 -10.74481 -9.76919 -8.98432 -7.54527 0.06077
1.03078 1.12107 1.19476 1.87126 2.36711 2.41145 2.96294 3.33059
3.65893 3.73686 3.86170 4.02130 4.14091 4.21060 4.31782 4.40193
4.48771 4.64656 4.67521 4.74407 4.80582 4.90413 4.97962 5.02583
5.13172 5.16441 5.21056 5.30690 5.38771 5.50257 5.80631 5.95606
6.00661 6.51858 8.19305
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.042829 B = 0.006197 C = 0.005973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 653.608384 B = 4517.528684 C = 4686.534112
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.117 4.117
3 C 0.074 3.926
4 H 0.085 0.915
5 C -0.160 4.160
6 C 0.106 3.894
7 H 0.103 0.897
8 N -0.990 5.990
9 C 0.093 3.907
10 S 2.693 3.307
11 O -1.026 7.026
12 O -1.025 7.025
13 C -1.038 5.038
14 H 0.105 0.895
15 C 0.109 3.891
16 N -0.853 5.853
17 Si 0.823 3.177
18 H -0.237 1.237
19 H -0.219 1.219
20 H -0.230 1.230
21 C 0.038 3.962
22 O -0.378 6.378
23 H 0.063 0.937
24 H 0.060 0.940
25 H 0.046 0.954
26 H 0.063 0.937
27 H 0.091 0.909
28 H 0.082 0.918
29 H 0.099 0.901
30 H 0.062 0.938
31 H 0.060 0.940
32 H 0.093 0.907
33 H 0.291 0.709
34 H 0.089 0.911
35 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.281 -9.024 -8.291 16.657
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.154 4.154
3 C 0.016 3.984
4 H 0.103 0.897
5 C -0.200 4.200
6 C -0.001 4.001
7 H 0.121 0.879
8 N -0.829 5.829
9 C -0.052 4.052
10 S 2.795 3.205
11 O -1.016 7.016
12 O -1.015 7.015
13 C -1.171 5.171
14 H 0.124 0.876
15 C -0.108 4.108
16 N -0.483 5.483
17 Si 0.640 3.360
18 H -0.160 1.160
19 H -0.141 1.141
20 H -0.153 1.153
21 C -0.040 4.040
22 O -0.297 6.297
23 H 0.082 0.918
24 H 0.079 0.921
25 H 0.065 0.935
26 H 0.082 0.918
27 H 0.109 0.891
28 H 0.101 0.899
29 H 0.118 0.882
30 H 0.081 0.919
31 H 0.079 0.921
32 H 0.111 0.889
33 H 0.102 0.898
34 H 0.108 0.892
35 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -10.613 -9.330 -8.412 16.445
hybrid contribution 0.692 0.890 0.500 1.234
sum -9.921 -8.440 -7.912 15.240
Atomic orbital electron populations
1.21701 0.94764 1.02054 1.01873 1.21618 0.97011 0.93489 1.03277
1.23215 0.92969 0.95475 0.86698 0.89706 1.23432 0.96803 0.98850
1.00886 1.22411 0.92381 0.97584 0.87716 0.87853 1.57124 1.31585
1.54909 1.39243 1.21527 1.01699 0.90810 0.91166 1.00738 0.71707
0.74492 0.73591 1.93423 1.70409 1.62730 1.75031 1.93357 1.81816
1.83019 1.43294 1.31061 1.03243 1.33584 1.49202 0.87637 1.25161
1.01369 0.92816 0.91424 1.70013 1.32128 1.15758 1.30420 0.87525
0.82742 0.83301 0.82470 1.16008 1.14100 1.15289 1.23788 0.87219
0.90168 1.02831 1.89108 1.58295 1.43878 1.38421 0.91759 0.92114
0.93486 0.91779 0.89050 0.89897 0.88235 0.91905 0.92083 0.88865
0.89812 0.89228 0.89385
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.31 9.85 71.98 0.71 -1.60 16
2 C -0.12 -2.03 5.56 30.60 0.17 -1.86 16
3 C 0.07 1.57 3.25 31.10 0.10 1.67 16
4 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16
5 C -0.16 -3.97 6.13 31.61 0.19 -3.78 16
6 C 0.11 3.40 3.49 46.01 0.16 3.56 16
7 H 0.10 3.54 7.04 -2.39 -0.02 3.52 16
8 N -0.99 -38.12 3.07 -511.22 -1.57 -39.69 16
9 C 0.09 3.06 9.40 127.77 1.20 4.26 16
10 S 2.69 134.48 4.14 -56.49 -0.23 134.25 16
11 O -1.03 -55.01 15.10 -128.00 -1.93 -56.94 16
12 O -1.02 -53.51 15.46 -128.00 -1.98 -55.48 16
13 C -1.04 -58.67 10.29 67.73 0.70 -57.97 16
14 H 0.11 6.09 8.06 -2.91 -0.02 6.07 16
15 C 0.11 6.29 5.47 84.65 0.46 6.76 16
16 N -0.85 -49.53 13.96 21.45 0.30 -49.23 16
17 Si 0.82 41.16 26.54 68.60 1.82 42.98 16
18 H -0.24 -11.41 7.11 99.48 0.71 -10.70 16
19 H -0.22 -9.64 7.11 99.48 0.71 -8.94 16
20 H -0.23 -11.89 5.61 99.48 0.56 -11.33 16
21 C 0.04 1.09 6.50 72.48 0.47 1.56 16
22 O -0.38 -9.97 10.14 -148.98 -1.51 -11.48 16
23 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16
24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
25 H 0.05 0.88 8.01 -2.38 -0.02 0.86 16
26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16
28 H 0.08 2.09 7.10 -2.38 -0.02 2.07 16
29 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16
30 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16
31 H 0.06 2.14 7.79 -2.38 -0.02 2.12 16
32 H 0.09 2.69 6.28 -2.39 -0.01 2.67 16
33 H 0.29 15.21 8.31 -92.71 -0.77 14.44 16
34 H 0.09 2.76 7.98 -2.39 -0.02 2.74 16
35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16
Total: -1.00 -67.81 293.64 -0.02 -67.83
By element:
Atomic # 1 Polarization: 14.26 SS G_CDS: 0.92 Total: 15.18 kcal
Atomic # 6 Polarization: -51.58 SS G_CDS: 4.17 Total: -47.42 kcal
Atomic # 7 Polarization: -87.65 SS G_CDS: -1.27 Total: -88.92 kcal
Atomic # 8 Polarization: -118.48 SS G_CDS: -5.42 Total: -123.90 kcal
Atomic # 14 Polarization: 41.16 SS G_CDS: 1.82 Total: 42.98 kcal
Atomic # 16 Polarization: 134.48 SS G_CDS: -0.23 Total: 134.25 kcal
Total: -67.81 -0.02 -67.83 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000711202891.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.048 kcal
(2) G-P(sol) polarization free energy of solvation -67.806 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.854 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.878 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds