Wall clock time and date at job start Mon Mar 30 2020 04:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09000 * 110.33110 * 307.24774 * 3 2 1 5 5 C 1.54481 * 110.37094 * 184.99935 * 3 2 1 6 6 C 1.54508 * 104.06026 * 217.18800 * 5 3 2 7 7 H 1.08999 * 110.51312 * 241.35528 * 6 5 3 8 8 N 1.46497 * 110.51306 * 118.78454 * 6 5 3 9 9 C 1.46499 * 119.99869 * 300.00056 * 8 6 5 10 10 S 1.65594 * 120.00401 * 119.99824 * 8 6 5 11 11 O 1.42105 * 106.40474 * 203.54355 * 10 8 6 12 12 O 1.42103 * 106.40404 * 336.45972 * 10 8 6 13 13 C 1.76194 * 107.22066 * 89.99959 * 10 8 6 14 14 H 1.08000 * 119.99692 * 0.02562 * 13 10 8 15 15 C 1.37877 * 120.00599 * 180.02562 * 13 10 8 16 16 N 1.31515 * 120.00432 * 180.02562 * 15 13 10 17 17 Si 1.86802 * 119.99551 * 359.97438 * 15 13 10 18 18 H 1.48509 * 109.46987 * 90.00330 * 17 15 13 19 19 H 1.48500 * 109.47282 * 209.99885 * 17 15 13 20 20 H 1.48501 * 109.47525 * 330.00355 * 17 15 13 21 21 C 1.54476 * 104.06562 * 359.97438 * 6 5 3 22 22 O 1.44421 * 110.37184 * 69.61645 * 3 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.09004 * 110.51411 * 335.83185 * 5 3 2 29 29 H 1.09002 * 110.50985 * 98.40762 * 5 3 2 30 30 H 1.09001 * 109.47523 * 89.99531 * 9 8 6 31 31 H 1.09005 * 109.47289 * 210.00058 * 9 8 6 32 32 H 1.09003 * 109.47134 * 329.99985 * 9 8 6 33 33 H 0.97003 * 119.99926 * 179.97438 * 16 15 13 34 34 H 1.08998 * 110.37613 * 142.80833 * 21 6 5 35 35 H 1.08998 * 110.37471 * 265.15052 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5830 2.0058 -0.8136 5 6 3.5794 1.4687 -0.1262 6 6 4.0107 2.6420 0.7818 7 1 4.5193 3.4095 0.1984 8 7 4.8757 2.1635 1.8630 9 6 4.3766 1.1668 2.8136 10 16 6.4176 2.7489 2.0105 11 8 7.1539 1.7652 2.7244 12 8 6.7935 3.2185 0.7230 13 6 6.3397 4.1666 3.0538 14 1 5.3912 4.4879 3.4583 15 6 7.4894 4.8659 3.3539 16 7 7.4313 5.9238 4.1331 17 14 9.1300 4.3098 2.6548 18 1 9.3627 4.9761 1.3481 19 1 10.2186 4.6742 3.5969 20 1 9.1131 2.8373 2.4635 21 6 2.6808 3.1865 1.3487 22 8 1.7630 2.0737 1.2691 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 4.0079 0.5321 0.2307 29 1 3.8749 1.6536 -1.1590 30 1 4.5969 0.1666 2.4407 31 1 4.8625 1.3100 3.7788 32 1 3.2988 1.2823 2.9288 33 1 8.2403 6.4155 4.3445 34 1 2.8094 3.4982 2.3852 35 1 2.3225 4.0187 0.7429 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711202891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:52 Heat of formation + Delta-G solvation = -152.877952 kcal Electronic energy + Delta-G solvation = -19215.195464 eV Core-core repulsion = 16146.096313 eV Total energy + Delta-G solvation = -3069.099151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78037 -37.76543 -36.61780 -36.49129 -35.19735 -34.38647 -31.69495 -29.02105 -28.55624 -26.93282 -24.48742 -22.26784 -21.74750 -20.62762 -19.36003 -18.79520 -17.48114 -17.31549 -16.85699 -16.50942 -16.13239 -15.63231 -15.21351 -14.98222 -14.62281 -14.45883 -14.13314 -13.85000 -13.49852 -13.44997 -13.17604 -13.03357 -12.78578 -12.71034 -12.57442 -12.34963 -12.27116 -12.12310 -11.73879 -11.68944 -11.48508 -11.35279 -11.20840 -10.74481 -9.76919 -8.98432 -7.54527 0.06077 1.03078 1.12107 1.19476 1.87126 2.36711 2.41145 2.96294 3.33059 3.65893 3.73686 3.86170 4.02130 4.14091 4.21060 4.31782 4.40193 4.48771 4.64656 4.67521 4.74407 4.80582 4.90413 4.97962 5.02583 5.13172 5.16441 5.21056 5.30690 5.38771 5.50257 5.80631 5.95606 6.00661 6.51858 8.19305 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.042829 B = 0.006197 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.608384 B = 4517.528684 C = 4686.534112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.074 3.926 4 H 0.085 0.915 5 C -0.160 4.160 6 C 0.106 3.894 7 H 0.103 0.897 8 N -0.990 5.990 9 C 0.093 3.907 10 S 2.693 3.307 11 O -1.026 7.026 12 O -1.025 7.025 13 C -1.038 5.038 14 H 0.105 0.895 15 C 0.109 3.891 16 N -0.853 5.853 17 Si 0.823 3.177 18 H -0.237 1.237 19 H -0.219 1.219 20 H -0.230 1.230 21 C 0.038 3.962 22 O -0.378 6.378 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.291 0.709 34 H 0.089 0.911 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 -9.024 -8.291 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.016 3.984 4 H 0.103 0.897 5 C -0.200 4.200 6 C -0.001 4.001 7 H 0.121 0.879 8 N -0.829 5.829 9 C -0.052 4.052 10 S 2.795 3.205 11 O -1.016 7.016 12 O -1.015 7.015 13 C -1.171 5.171 14 H 0.124 0.876 15 C -0.108 4.108 16 N -0.483 5.483 17 Si 0.640 3.360 18 H -0.160 1.160 19 H -0.141 1.141 20 H -0.153 1.153 21 C -0.040 4.040 22 O -0.297 6.297 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.613 -9.330 -8.412 16.445 hybrid contribution 0.692 0.890 0.500 1.234 sum -9.921 -8.440 -7.912 15.240 Atomic orbital electron populations 1.21701 0.94764 1.02054 1.01873 1.21618 0.97011 0.93489 1.03277 1.23215 0.92969 0.95475 0.86698 0.89706 1.23432 0.96803 0.98850 1.00886 1.22411 0.92381 0.97584 0.87716 0.87853 1.57124 1.31585 1.54909 1.39243 1.21527 1.01699 0.90810 0.91166 1.00738 0.71707 0.74492 0.73591 1.93423 1.70409 1.62730 1.75031 1.93357 1.81816 1.83019 1.43294 1.31061 1.03243 1.33584 1.49202 0.87637 1.25161 1.01369 0.92816 0.91424 1.70013 1.32128 1.15758 1.30420 0.87525 0.82742 0.83301 0.82470 1.16008 1.14100 1.15289 1.23788 0.87219 0.90168 1.02831 1.89108 1.58295 1.43878 1.38421 0.91759 0.92114 0.93486 0.91779 0.89050 0.89897 0.88235 0.91905 0.92083 0.88865 0.89812 0.89228 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.85 71.98 0.71 -1.60 16 2 C -0.12 -2.03 5.56 30.60 0.17 -1.86 16 3 C 0.07 1.57 3.25 31.10 0.10 1.67 16 4 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 5 C -0.16 -3.97 6.13 31.61 0.19 -3.78 16 6 C 0.11 3.40 3.49 46.01 0.16 3.56 16 7 H 0.10 3.54 7.04 -2.39 -0.02 3.52 16 8 N -0.99 -38.12 3.07 -511.22 -1.57 -39.69 16 9 C 0.09 3.06 9.40 127.77 1.20 4.26 16 10 S 2.69 134.48 4.14 -56.49 -0.23 134.25 16 11 O -1.03 -55.01 15.10 -128.00 -1.93 -56.94 16 12 O -1.02 -53.51 15.46 -128.00 -1.98 -55.48 16 13 C -1.04 -58.67 10.29 67.73 0.70 -57.97 16 14 H 0.11 6.09 8.06 -2.91 -0.02 6.07 16 15 C 0.11 6.29 5.47 84.65 0.46 6.76 16 16 N -0.85 -49.53 13.96 21.45 0.30 -49.23 16 17 Si 0.82 41.16 26.54 68.60 1.82 42.98 16 18 H -0.24 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.22 -9.64 7.11 99.48 0.71 -8.94 16 20 H -0.23 -11.89 5.61 99.48 0.56 -11.33 16 21 C 0.04 1.09 6.50 72.48 0.47 1.56 16 22 O -0.38 -9.97 10.14 -148.98 -1.51 -11.48 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.88 8.01 -2.38 -0.02 0.86 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 2.09 7.10 -2.38 -0.02 2.07 16 29 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 31 H 0.06 2.14 7.79 -2.38 -0.02 2.12 16 32 H 0.09 2.69 6.28 -2.39 -0.01 2.67 16 33 H 0.29 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.09 2.76 7.98 -2.39 -0.02 2.74 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -67.81 293.64 -0.02 -67.83 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.92 Total: 15.18 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 4.17 Total: -47.42 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -1.27 Total: -88.92 kcal Atomic # 8 Polarization: -118.48 SS G_CDS: -5.42 Total: -123.90 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.82 Total: 42.98 kcal Atomic # 16 Polarization: 134.48 SS G_CDS: -0.23 Total: 134.25 kcal Total: -67.81 -0.02 -67.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711202891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.048 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds