Wall clock time and date at job start Mon Mar 30 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.89241 * 2 1 4 4 C 1.55130 * 110.93837 * 124.07540 * 2 1 3 5 5 N 1.47431 * 104.72386 * 155.28470 * 4 2 1 6 6 S 1.65601 * 125.64608 * 155.81595 * 5 4 2 7 7 O 1.42099 * 104.27222 * 153.62564 * 6 5 4 8 8 O 1.42100 * 104.27813 * 25.76551 * 6 5 4 9 9 C 1.81399 * 104.44938 * 269.69332 * 6 5 4 10 10 C 1.50703 * 109.47111 * 180.02562 * 9 6 5 11 11 H 1.07994 * 119.99603 * 0.02562 * 10 9 6 12 12 C 1.37875 * 119.99838 * 180.02562 * 10 9 6 13 13 N 1.31513 * 120.00380 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99776 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99769 * 14 12 10 18 18 C 1.47022 * 108.70154 * 335.55481 * 5 4 2 19 19 C 1.54320 * 107.27048 * 1.28772 * 18 5 4 20 20 H 1.09007 * 110.71694 * 263.64761 * 19 18 5 21 21 C 1.53001 * 110.72379 * 140.55846 * 19 18 5 22 22 O 1.42904 * 109.46924 * 66.44704 * 21 19 18 23 23 H 1.09002 * 109.47492 * 183.88526 * 1 2 3 24 24 H 1.09000 * 109.47063 * 303.88258 * 1 2 3 25 25 H 1.08997 * 109.47094 * 63.87900 * 1 2 3 26 26 H 1.09006 * 110.49751 * 36.44876 * 4 2 1 27 27 H 1.09004 * 110.34388 * 274.05033 * 4 2 1 28 28 H 1.09005 * 109.47386 * 60.00290 * 9 6 5 29 29 H 1.08998 * 109.47210 * 300.00195 * 9 6 5 30 30 H 0.97001 * 119.99667 * 0.02562 * 13 12 10 31 31 H 1.08997 * 109.87905 * 120.70045 * 18 5 4 32 32 H 1.08995 * 109.88274 * 241.70986 * 18 5 4 33 33 H 1.08990 * 109.47512 * 186.44880 * 21 19 18 34 34 H 1.09000 * 109.46823 * 306.45322 * 21 19 18 35 35 H 0.96703 * 113.99290 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0843 -0.8118 1.2001 5 7 3.4280 -1.2423 0.7725 6 16 4.6824 -1.6332 1.7805 7 8 5.4759 -2.5334 1.0195 8 8 4.0494 -2.0506 2.9823 9 6 5.5629 -0.0678 2.0354 10 6 6.7409 -0.2967 2.9471 11 1 6.9400 -1.2851 3.3340 12 6 7.5641 0.7557 3.2871 13 7 7.3218 1.9592 2.8154 14 14 9.0246 0.4718 4.4166 15 1 9.0779 -0.9601 4.8065 16 1 8.8797 1.3107 5.6334 17 1 10.2770 0.8394 3.7083 18 6 3.4678 -1.2732 -0.6968 19 6 2.0861 -0.8075 -1.2025 20 1 1.4481 -1.6632 -1.4241 21 6 2.2340 0.0882 -2.4340 22 8 2.7476 -0.6810 -3.5234 23 1 -0.3634 -1.0253 0.0696 24 1 -0.3633 0.5729 0.8531 25 1 -0.3633 0.4524 -0.9227 26 1 1.4537 -1.6784 1.3986 27 1 2.1523 -0.1801 2.0858 28 1 4.8884 0.6590 2.4881 29 1 5.9148 0.3115 1.0760 30 1 6.5636 2.1065 2.2286 31 1 4.2425 -0.5984 -1.0609 32 1 3.6685 -2.2878 -1.0410 33 1 1.2607 0.4970 -2.7050 34 1 2.9211 0.9040 -2.2095 35 1 2.8677 -0.1759 -4.3393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713327097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:07 Heat of formation + Delta-G solvation = -139.378825 kcal Electronic energy + Delta-G solvation = -18739.413738 eV Core-core repulsion = 15670.899953 eV Total energy + Delta-G solvation = -3068.513785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.15820 -36.51158 -36.22476 -35.07604 -33.69932 -32.60766 -30.40006 -28.55926 -26.15544 -25.18055 -23.35860 -21.43331 -20.23755 -18.49299 -17.38853 -17.31314 -16.87673 -16.35494 -15.28744 -14.97638 -14.68143 -13.94102 -13.89139 -13.79846 -13.38128 -12.87462 -12.83056 -12.64769 -12.42621 -12.24999 -11.68960 -11.65936 -11.29724 -11.22279 -11.02490 -11.02080 -10.79229 -10.75167 -10.62118 -10.21293 -10.10535 -9.64146 -9.16992 -8.64630 -8.51081 -6.70142 -4.46590 1.15698 3.34816 3.38381 3.44649 3.54686 3.94992 4.33940 4.36524 4.48023 4.71943 4.89596 4.99621 5.10773 5.12327 5.20580 5.27755 5.39670 5.43678 5.51112 5.54631 5.75961 5.81237 5.91465 6.02283 6.10873 6.24799 6.30144 6.33862 6.54832 6.80038 7.43868 7.45784 8.02960 8.47680 9.29850 10.72678 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.005684 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.187205 B = 4924.604833 C = 5103.096966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.129 3.871 5 N -1.024 6.024 6 S 2.611 3.389 7 O -0.972 6.972 8 O -0.973 6.973 9 C -0.442 4.442 10 C -0.610 4.610 11 H 0.064 0.936 12 C 0.035 3.965 13 N -0.893 5.893 14 Si 1.079 2.921 15 H -0.283 1.283 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.133 3.867 19 C -0.093 4.093 20 H 0.090 0.910 21 C 0.085 3.915 22 O -0.572 6.572 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.272 0.728 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.987 -0.185 -9.567 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.106 0.894 4 C 0.004 3.996 5 N -0.860 5.860 6 S 2.712 3.288 7 O -0.963 6.963 8 O -0.964 6.964 9 C -0.577 4.577 10 C -0.649 4.649 11 H 0.083 0.917 12 C -0.173 4.173 13 N -0.527 5.527 14 Si 0.905 3.095 15 H -0.208 1.208 16 H -0.207 1.207 17 H -0.207 1.207 18 C 0.007 3.993 19 C -0.113 4.113 20 H 0.108 0.892 21 C 0.007 3.993 22 O -0.377 6.377 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -11.525 -0.844 -7.998 14.054 hybrid contribution -1.282 0.467 -1.375 1.937 sum -12.807 -0.377 -9.373 15.875 Atomic orbital electron populations 1.21727 0.93849 1.02338 1.01997 1.22447 0.95945 0.99600 0.93953 0.89374 1.21972 0.83263 0.97709 0.96694 1.59028 1.25181 1.85360 1.16430 1.05124 0.72663 0.78611 0.72387 1.93476 1.69519 1.62260 1.71010 1.93474 1.74854 1.81686 1.46358 1.27910 1.08643 1.15258 1.05888 1.21301 1.11878 0.98875 1.32816 0.91743 1.25996 1.01270 0.92092 0.97941 1.70745 1.29586 1.22120 1.30234 0.83415 0.74652 0.75780 0.75701 1.20795 1.20704 1.20693 1.21562 0.96743 1.01701 0.79244 1.22288 0.97133 0.98781 0.93103 0.89152 1.22185 0.97416 0.93151 0.86536 1.86513 1.87816 1.40634 1.22732 0.92198 0.92027 0.92363 0.91508 0.90614 0.90781 0.90775 0.91794 0.91812 0.91156 0.93355 0.93126 0.77480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.31 37.16 0.35 -0.84 16 2 C -0.10 -1.09 3.10 -88.35 -0.27 -1.36 16 3 H 0.09 0.93 8.05 -51.93 -0.42 0.52 16 4 C 0.13 1.85 6.36 -2.41 -0.02 1.83 16 5 N -1.02 -17.98 3.62 -111.29 -0.40 -18.39 16 6 S 2.61 58.53 5.57 -107.50 -0.60 57.93 16 7 O -0.97 -24.23 17.60 -57.54 -1.01 -25.24 16 8 O -0.97 -23.85 17.60 -57.54 -1.01 -24.86 16 9 C -0.44 -10.88 5.24 36.01 0.19 -10.69 16 10 C -0.61 -17.35 9.13 -34.44 -0.31 -17.66 16 11 H 0.06 1.83 7.71 -52.49 -0.40 1.43 16 12 C 0.03 0.99 5.46 -17.82 -0.10 0.89 16 13 N -0.89 -26.20 13.65 55.43 0.76 -25.44 16 14 Si 1.08 24.92 29.90 -169.99 -5.08 19.84 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.13 2.07 6.34 -3.07 -0.02 2.05 16 19 C -0.09 -1.09 2.70 -88.79 -0.24 -1.33 16 20 H 0.09 1.03 8.04 -51.92 -0.42 0.62 16 21 C 0.09 0.83 6.36 37.16 0.24 1.07 16 22 O -0.57 -5.99 13.50 -35.23 -0.48 -6.46 16 23 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.90 7.99 -51.93 -0.41 0.49 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.77 8.01 -51.92 -0.42 1.35 16 29 H 0.07 1.79 8.01 -51.93 -0.42 1.37 16 30 H 0.27 7.79 7.22 -40.82 -0.29 7.49 16 31 H 0.06 0.98 7.76 -51.93 -0.40 0.58 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.49 8.06 -51.93 -0.42 0.07 16 35 H 0.38 2.18 9.12 45.56 0.42 2.59 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -35.77 305.53 -7.93 -43.70 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.52 Total: 0.37 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -0.19 Total: -26.05 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.35 Total: -43.83 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -2.50 Total: -56.57 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Atomic # 16 Polarization: 58.53 SS G_CDS: -0.60 Total: 57.93 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.77 -7.93 -43.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713327097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.677 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds