Wall clock time and date at job start Mon Mar 30 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.89241 * 2 1 4 4 C 1.55130 * 110.93837 * 124.07540 * 2 1 3 5 5 N 1.47431 * 104.72386 * 155.28470 * 4 2 1 6 6 S 1.65601 * 125.64608 * 155.81595 * 5 4 2 7 7 O 1.42099 * 104.27222 * 153.62564 * 6 5 4 8 8 O 1.42100 * 104.27813 * 25.76551 * 6 5 4 9 9 C 1.81399 * 104.44938 * 269.69332 * 6 5 4 10 10 C 1.50703 * 109.47111 * 180.02562 * 9 6 5 11 11 H 1.07994 * 119.99603 * 0.02562 * 10 9 6 12 12 C 1.37875 * 119.99838 * 180.02562 * 10 9 6 13 13 N 1.31513 * 120.00380 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99776 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99769 * 14 12 10 18 18 C 1.47022 * 108.70154 * 335.55481 * 5 4 2 19 19 C 1.54320 * 107.27048 * 1.28772 * 18 5 4 20 20 H 1.09007 * 110.71694 * 263.64761 * 19 18 5 21 21 C 1.53001 * 110.72379 * 140.55846 * 19 18 5 22 22 O 1.42904 * 109.46924 * 66.44704 * 21 19 18 23 23 H 1.09002 * 109.47492 * 183.88526 * 1 2 3 24 24 H 1.09000 * 109.47063 * 303.88258 * 1 2 3 25 25 H 1.08997 * 109.47094 * 63.87900 * 1 2 3 26 26 H 1.09006 * 110.49751 * 36.44876 * 4 2 1 27 27 H 1.09004 * 110.34388 * 274.05033 * 4 2 1 28 28 H 1.09005 * 109.47386 * 60.00290 * 9 6 5 29 29 H 1.08998 * 109.47210 * 300.00195 * 9 6 5 30 30 H 0.97001 * 119.99667 * 0.02562 * 13 12 10 31 31 H 1.08997 * 109.87905 * 120.70045 * 18 5 4 32 32 H 1.08995 * 109.88274 * 241.70986 * 18 5 4 33 33 H 1.08990 * 109.47512 * 186.44880 * 21 19 18 34 34 H 1.09000 * 109.46823 * 306.45322 * 21 19 18 35 35 H 0.96703 * 113.99290 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0843 -0.8118 1.2001 5 7 3.4280 -1.2423 0.7725 6 16 4.6824 -1.6332 1.7805 7 8 5.4759 -2.5334 1.0195 8 8 4.0494 -2.0506 2.9823 9 6 5.5629 -0.0678 2.0354 10 6 6.7409 -0.2967 2.9471 11 1 6.9400 -1.2851 3.3340 12 6 7.5641 0.7557 3.2871 13 7 7.3218 1.9592 2.8154 14 14 9.0246 0.4718 4.4166 15 1 9.0779 -0.9601 4.8065 16 1 8.8797 1.3107 5.6334 17 1 10.2770 0.8394 3.7083 18 6 3.4678 -1.2732 -0.6968 19 6 2.0861 -0.8075 -1.2025 20 1 1.4481 -1.6632 -1.4241 21 6 2.2340 0.0882 -2.4340 22 8 2.7476 -0.6810 -3.5234 23 1 -0.3634 -1.0253 0.0696 24 1 -0.3633 0.5729 0.8531 25 1 -0.3633 0.4524 -0.9227 26 1 1.4537 -1.6784 1.3986 27 1 2.1523 -0.1801 2.0858 28 1 4.8884 0.6590 2.4881 29 1 5.9148 0.3115 1.0760 30 1 6.5636 2.1065 2.2286 31 1 4.2425 -0.5984 -1.0609 32 1 3.6685 -2.2878 -1.0410 33 1 1.2607 0.4970 -2.7050 34 1 2.9211 0.9040 -2.2095 35 1 2.8677 -0.1759 -4.3393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713327097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:07 Heat of formation + Delta-G solvation = -168.672061 kcal Electronic energy + Delta-G solvation = -18740.683988 eV Core-core repulsion = 15670.899953 eV Total energy + Delta-G solvation = -3069.784035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.20526 -38.16349 -37.33741 -37.00784 -35.83791 -33.69952 -31.36595 -30.63113 -27.12693 -26.29190 -25.42324 -22.49279 -21.17417 -20.15367 -19.37390 -18.64525 -18.09578 -17.62377 -17.10036 -16.51402 -15.71348 -15.63721 -15.25629 -14.99871 -14.69351 -14.43727 -14.21154 -14.01955 -13.74005 -13.60843 -13.37788 -13.19734 -13.15375 -12.69131 -12.60908 -12.23219 -12.00176 -11.98277 -11.68053 -11.57992 -11.52875 -11.18277 -10.84059 -10.76635 -9.97910 -8.94588 -6.72195 -0.66270 1.48467 1.56759 1.76646 1.81132 2.43143 2.87500 2.89437 3.08005 3.24666 3.43833 3.68469 4.08624 4.16667 4.28493 4.37315 4.40803 4.46277 4.47116 4.51976 4.58655 4.65336 4.82798 4.88347 5.01503 5.12879 5.13486 5.29807 5.30547 5.37585 5.50766 5.82622 6.24528 6.94632 7.11817 8.49700 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.005684 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.187205 B = 4924.604833 C = 5103.096966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 H 0.094 0.906 4 C 0.112 3.888 5 N -1.021 6.021 6 S 2.642 3.358 7 O -1.000 7.000 8 O -0.995 6.995 9 C -0.454 4.454 10 C -0.639 4.639 11 H 0.055 0.945 12 C -0.012 4.012 13 N -0.911 5.911 14 Si 1.116 2.884 15 H -0.272 1.272 16 H -0.266 1.266 17 H -0.267 1.267 18 C 0.122 3.878 19 C -0.086 4.086 20 H 0.097 0.903 21 C 0.087 3.913 22 O -0.594 6.594 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.300 0.357 -10.261 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.112 0.888 4 C -0.012 4.012 5 N -0.860 5.860 6 S 2.742 3.258 7 O -0.991 6.991 8 O -0.986 6.986 9 C -0.587 4.587 10 C -0.677 4.677 11 H 0.073 0.927 12 C -0.214 4.214 13 N -0.545 5.545 14 Si 0.935 3.065 15 H -0.197 1.197 16 H -0.191 1.191 17 H -0.192 1.192 18 C -0.003 4.003 19 C -0.106 4.106 20 H 0.115 0.885 21 C 0.009 3.991 22 O -0.403 6.403 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -12.842 -0.281 -8.708 15.519 hybrid contribution -0.960 0.280 -1.243 1.595 sum -13.802 -0.001 -9.951 17.015 Atomic orbital electron populations 1.21723 0.91291 1.02955 1.03456 1.22434 0.97821 0.98983 0.91531 0.88783 1.22395 0.81558 0.98786 0.98464 1.58601 1.25177 1.85110 1.17100 1.03840 0.72638 0.77257 0.72051 1.93429 1.71169 1.62900 1.71587 1.93433 1.75244 1.81774 1.48139 1.27973 1.08265 1.17328 1.05116 1.21701 1.13522 0.98758 1.33762 0.92666 1.27455 1.03627 0.91615 0.98712 1.70847 1.29826 1.22782 1.31077 0.82982 0.72208 0.76596 0.74738 1.19694 1.19077 1.19199 1.21829 0.99566 1.01188 0.77718 1.22311 0.94441 0.99594 0.94286 0.88516 1.22190 0.99028 0.92296 0.85578 1.86459 1.88042 1.41873 1.23923 0.91949 0.91287 0.90307 0.90580 0.90730 0.90460 0.90851 0.92565 0.92166 0.92458 0.90301 0.93153 0.75201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.31 71.98 0.67 -1.13 16 2 C -0.09 -1.70 3.10 -9.33 -0.03 -1.73 16 3 H 0.09 1.74 8.05 -2.39 -0.02 1.72 16 4 C 0.11 3.08 6.36 86.93 0.55 3.63 16 5 N -1.02 -35.68 3.62 -506.00 -1.83 -37.51 16 6 S 2.64 120.47 5.57 -56.49 -0.31 120.15 16 7 O -1.00 -50.89 17.60 -127.65 -2.25 -53.13 16 8 O -1.00 -49.34 17.60 -127.65 -2.25 -51.59 16 9 C -0.45 -22.85 5.24 71.24 0.37 -22.47 16 10 C -0.64 -37.04 9.13 25.60 0.23 -36.80 16 11 H 0.06 3.21 7.71 -2.91 -0.02 3.19 16 12 C -0.01 -0.67 5.46 84.65 0.46 -0.20 16 13 N -0.91 -53.82 13.65 21.45 0.29 -53.53 16 14 Si 1.12 49.61 29.90 68.60 2.05 51.66 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 18 C 0.12 3.73 6.34 86.73 0.55 4.28 16 19 C -0.09 -1.84 2.70 -9.61 -0.03 -1.87 16 20 H 0.10 1.96 8.04 -2.38 -0.02 1.94 16 21 C 0.09 1.45 6.36 71.98 0.46 1.91 16 22 O -0.59 -11.15 13.50 -148.98 -2.01 -13.16 16 23 H 0.06 0.81 8.07 -2.39 -0.02 0.80 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 1.94 7.99 -2.38 -0.02 1.92 16 27 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.08 3.78 8.01 -2.39 -0.02 3.76 16 29 H 0.07 3.65 8.01 -2.39 -0.02 3.63 16 30 H 0.26 15.43 7.22 -92.71 -0.67 14.76 16 31 H 0.06 1.86 7.76 -2.39 -0.02 1.84 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.85 8.06 -2.39 -0.02 0.83 16 35 H 0.40 3.67 9.12 -74.06 -0.68 3.00 16 Total: -1.00 -76.95 305.53 -2.56 -79.51 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.50 Total: 11.99 kcal Atomic # 6 Polarization: -57.63 SS G_CDS: 3.25 Total: -54.38 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -1.54 Total: -91.04 kcal Atomic # 8 Polarization: -111.38 SS G_CDS: -6.51 Total: -117.89 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.05 Total: 51.66 kcal Atomic # 16 Polarization: 120.47 SS G_CDS: -0.31 Total: 120.15 kcal Total: -76.95 -2.56 -79.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713327097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.165 kcal (2) G-P(sol) polarization free energy of solvation -76.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds