Wall clock time and date at job start Mon Mar 30 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00199 * 2 1 4 4 C 1.53001 * 110.04578 * 304.23012 * 3 2 1 5 5 N 1.46898 * 109.47236 * 297.33465 * 4 3 2 6 6 C 1.46902 * 110.99948 * 174.31987 * 5 4 3 7 7 C 1.50698 * 109.47064 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99957 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99982 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99889 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99908 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46865 * 90.00183 * 11 9 7 13 13 H 1.48504 * 109.47007 * 209.99898 * 11 9 7 14 14 H 1.48496 * 109.47335 * 330.00248 * 11 9 7 15 15 C 1.53879 * 110.02913 * 182.82579 * 3 2 1 16 16 C 1.54165 * 108.59634 * 287.82545 * 15 3 2 17 17 S 1.82924 * 105.08383 * 332.15440 * 16 15 3 18 18 O 1.42098 * 109.35343 * 115.52576 * 17 16 15 19 19 O 1.42102 * 109.35339 * 248.59480 * 17 16 15 20 20 C 1.54744 * 110.03000 * 65.44243 * 3 2 1 21 21 H 1.08997 * 109.47167 * 63.91200 * 1 2 3 22 22 H 1.09000 * 109.47441 * 183.91099 * 1 2 3 23 23 H 1.09001 * 109.47301 * 303.90793 * 1 2 3 24 24 H 1.09006 * 109.47001 * 57.33866 * 4 3 2 25 25 H 1.08999 * 109.46696 * 177.33271 * 4 3 2 26 26 H 1.00900 * 111.00019 * 298.27121 * 5 4 3 27 27 H 1.09006 * 109.46664 * 299.99794 * 6 5 4 28 28 H 1.09002 * 109.47262 * 59.99644 * 6 5 4 29 29 H 0.97003 * 119.99720 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.64337 * 168.03391 * 15 3 2 31 31 H 1.08996 * 109.64409 * 47.60881 * 15 3 2 32 32 H 1.09000 * 110.32174 * 91.05672 * 16 15 3 33 33 H 1.09000 * 110.32089 * 213.25800 * 16 15 3 34 34 H 1.08999 * 110.80754 * 318.65035 * 20 3 2 35 35 H 1.09004 * 110.97866 * 195.22631 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4850 2.1134 -1.1884 5 7 1.8911 1.4624 -2.4410 6 6 1.2918 2.1343 -3.6018 7 6 1.7306 1.4405 -4.8656 8 1 2.3891 0.5861 -4.8118 9 6 1.2914 1.8963 -6.0904 10 7 0.4900 2.9370 -6.1559 11 14 1.8359 1.0367 -7.6570 12 1 0.8709 -0.0415 -7.9909 13 1 1.8847 2.0193 -8.7694 14 1 3.1848 0.4491 -7.4560 15 6 3.5437 1.1996 -0.0713 16 6 4.0651 0.6917 1.2877 17 16 2.8279 1.2535 2.5124 18 8 2.2015 0.1224 3.1018 19 8 3.4051 2.2542 3.3399 20 6 1.6739 2.0354 1.3223 21 1 -0.3633 0.4519 -0.9229 22 1 -0.3634 -1.0252 0.0701 23 1 -0.3634 0.5733 0.8529 24 1 0.3971 2.1638 -1.1410 25 1 1.8972 3.1218 -1.1527 26 1 2.8963 1.4288 -2.5217 27 1 0.2053 2.0947 -3.5236 28 1 1.6166 3.1745 -3.6273 29 1 0.1813 3.2579 -7.0177 30 1 3.9692 2.1803 -0.2839 31 1 3.8265 0.4993 -0.8572 32 1 4.1290 -0.3964 1.2860 33 1 5.0395 1.1285 1.5065 34 1 0.6386 1.8549 1.6117 35 1 1.8699 3.1044 1.2388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720907865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:26 Heat of formation + Delta-G solvation = -109.367754 kcal Electronic energy + Delta-G solvation = -18728.291569 eV Core-core repulsion = 15661.079161 eV Total energy + Delta-G solvation = -3067.212408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.44141 -37.08200 -36.09203 -35.19199 -34.20428 -32.35775 -30.15129 -27.72008 -26.86623 -24.93222 -23.61997 -21.59439 -20.09346 -18.92742 -17.46144 -16.95981 -16.22437 -16.09846 -15.39063 -15.24084 -15.04229 -14.75388 -14.28206 -14.05037 -13.69049 -13.02025 -12.80828 -12.60782 -12.28568 -12.20886 -12.10322 -12.00397 -11.64062 -11.44644 -11.38378 -11.08161 -10.84907 -10.74157 -10.51667 -10.35888 -10.06383 -9.52730 -9.19693 -8.55651 -7.43820 -6.11012 -4.13288 -0.04096 2.40843 3.27771 3.33903 3.37134 3.44585 3.61671 3.94708 4.17630 4.35955 4.42025 4.50256 4.67557 5.05616 5.08793 5.23830 5.25449 5.37217 5.43126 5.55697 5.68226 5.70812 5.80489 5.87964 6.00593 6.12472 7.06930 7.19279 7.29010 7.68243 8.01587 8.23560 8.47260 8.95663 9.52248 11.00056 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.042425 B = 0.004411 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.831334 B = 6346.746756 C = 6439.610108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.124 3.876 4 C 0.045 3.955 5 N -0.680 5.680 6 C 0.194 3.806 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.900 3.100 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.101 4.101 16 C -0.583 4.583 17 S 2.390 3.610 18 O -0.932 6.932 19 O -0.948 6.948 20 C -0.623 4.623 21 H 0.060 0.940 22 H 0.088 0.912 23 H 0.036 0.964 24 H 0.077 0.923 25 H 0.034 0.966 26 H 0.330 0.670 27 H 0.027 0.973 28 H -0.013 1.013 29 H 0.262 0.738 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 -1.834 14.602 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.273 6.273 3 C 0.082 3.918 4 C -0.087 4.087 5 N -0.311 5.311 6 C 0.068 3.932 7 C -0.553 4.553 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.728 3.272 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.139 4.139 16 C -0.713 4.713 17 S 2.574 3.426 18 O -0.929 6.929 19 O -0.945 6.945 20 C -0.753 4.753 21 H 0.078 0.922 22 H 0.106 0.894 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.148 0.852 27 H 0.045 0.955 28 H 0.004 0.996 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.514 -2.459 15.509 16.091 hybrid contribution 0.415 0.815 -1.815 2.032 sum 3.928 -1.645 13.694 14.341 Atomic orbital electron populations 1.22858 0.80687 1.02925 1.00547 1.87975 1.20364 1.24463 1.94466 1.22025 0.93387 0.84639 0.91783 1.22330 1.01288 0.94573 0.90489 1.60600 1.14018 1.55494 1.00995 1.19572 0.95298 0.91846 0.86486 1.21153 1.29591 1.14361 0.90242 0.91858 1.24987 0.95131 0.95061 0.99342 1.69956 1.33898 1.24556 1.25341 0.86467 0.79103 0.79181 0.82453 1.20580 1.21306 1.19815 1.21918 0.91360 1.04249 0.96396 1.30408 1.15615 1.12607 1.12652 1.08970 0.79154 0.76437 0.78009 1.93607 1.74788 1.50006 1.74547 1.93595 1.76894 1.59513 1.64459 1.31235 1.17047 1.12664 1.14336 0.92164 0.89356 0.94518 0.90446 0.94825 0.85234 0.95467 0.99561 0.92853 0.88475 0.86959 0.84110 0.84560 0.84006 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.22 101.05 1.03 1.37 16 2 O -0.35 -5.08 10.14 -35.23 -0.36 -5.44 16 3 C 0.12 1.55 0.51 -89.24 -0.05 1.50 16 4 C 0.04 0.68 4.28 -3.82 -0.02 0.67 16 5 N -0.68 -13.16 6.33 -115.05 -0.73 -13.89 16 6 C 0.19 4.79 5.43 -4.98 -0.03 4.77 16 7 C -0.51 -14.01 9.32 -34.44 -0.32 -14.33 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 11 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 C -0.10 -1.05 4.68 -25.66 -0.12 -1.17 16 16 C -0.58 -5.14 7.19 37.77 0.27 -4.87 16 17 S 2.39 25.85 6.01 -107.50 -0.65 25.20 16 18 O -0.93 -13.30 18.15 -57.73 -1.05 -14.35 16 19 O -0.95 -12.76 18.15 -57.73 -1.05 -13.81 16 20 C -0.62 -6.20 6.16 38.08 0.23 -5.97 16 21 H 0.06 0.87 6.57 -51.93 -0.34 0.53 16 22 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.04 0.40 6.20 -51.93 -0.32 0.07 16 24 H 0.08 1.22 6.47 -51.93 -0.34 0.88 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.33 5.97 7.39 -39.29 -0.29 5.68 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.11 1.26 7.52 -51.93 -0.39 0.87 16 32 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.14 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.14 1.28 6.17 -51.93 -0.32 0.96 16 35 H 0.15 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 297.65 15.07 4.49 4.49 Total: -1.00 -34.54 297.65 -7.64 -42.17 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.92 Total: 1.43 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 0.91 Total: -16.58 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.01 Total: -39.25 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -2.45 Total: -33.59 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 25.85 SS G_CDS: -0.65 Total: 25.20 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.54 -7.64 -42.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720907865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.196 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds