Wall clock time and date at job start Mon Mar 30 2020 05:16:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.42904 * 114.00199 * 2 1
4 4 C 1.53001 * 110.04578 * 304.23012 * 3 2 1
5 5 N 1.46898 * 109.47236 * 297.33465 * 4 3 2
6 6 C 1.46902 * 110.99948 * 174.31987 * 5 4 3
7 7 C 1.50698 * 109.47064 * 179.97438 * 6 5 4
8 8 H 1.07999 * 119.99957 * 359.97438 * 7 6 5
9 9 C 1.37877 * 119.99982 * 179.97438 * 7 6 5
10 10 N 1.31513 * 119.99889 * 0.02562 * 9 7 6
11 11 Si 1.86802 * 119.99908 * 179.97438 * 9 7 6
12 12 H 1.48504 * 109.46865 * 90.00183 * 11 9 7
13 13 H 1.48504 * 109.47007 * 209.99898 * 11 9 7
14 14 H 1.48496 * 109.47335 * 330.00248 * 11 9 7
15 15 C 1.53879 * 110.02913 * 182.82579 * 3 2 1
16 16 C 1.54165 * 108.59634 * 287.82545 * 15 3 2
17 17 S 1.82924 * 105.08383 * 332.15440 * 16 15 3
18 18 O 1.42098 * 109.35343 * 115.52576 * 17 16 15
19 19 O 1.42102 * 109.35339 * 248.59480 * 17 16 15
20 20 C 1.54744 * 110.03000 * 65.44243 * 3 2 1
21 21 H 1.08997 * 109.47167 * 63.91200 * 1 2 3
22 22 H 1.09000 * 109.47441 * 183.91099 * 1 2 3
23 23 H 1.09001 * 109.47301 * 303.90793 * 1 2 3
24 24 H 1.09006 * 109.47001 * 57.33866 * 4 3 2
25 25 H 1.08999 * 109.46696 * 177.33271 * 4 3 2
26 26 H 1.00900 * 111.00019 * 298.27121 * 5 4 3
27 27 H 1.09006 * 109.46664 * 299.99794 * 6 5 4
28 28 H 1.09002 * 109.47262 * 59.99644 * 6 5 4
29 29 H 0.97003 * 119.99720 * 179.97438 * 10 9 7
30 30 H 1.08998 * 109.64337 * 168.03391 * 15 3 2
31 31 H 1.08996 * 109.64409 * 47.60881 * 15 3 2
32 32 H 1.09000 * 110.32174 * 91.05672 * 16 15 3
33 33 H 1.09000 * 110.32089 * 213.25800 * 16 15 3
34 34 H 1.08999 * 110.80754 * 318.65035 * 20 3 2
35 35 H 1.09004 * 110.97866 * 195.22631 * 20 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 1.4850 2.1134 -1.1884
5 7 1.8911 1.4624 -2.4410
6 6 1.2918 2.1343 -3.6018
7 6 1.7306 1.4405 -4.8656
8 1 2.3891 0.5861 -4.8118
9 6 1.2914 1.8963 -6.0904
10 7 0.4900 2.9370 -6.1559
11 14 1.8359 1.0367 -7.6570
12 1 0.8709 -0.0415 -7.9909
13 1 1.8847 2.0193 -8.7694
14 1 3.1848 0.4491 -7.4560
15 6 3.5437 1.1996 -0.0713
16 6 4.0651 0.6917 1.2877
17 16 2.8279 1.2535 2.5124
18 8 2.2015 0.1224 3.1018
19 8 3.4051 2.2542 3.3399
20 6 1.6739 2.0354 1.3223
21 1 -0.3633 0.4519 -0.9229
22 1 -0.3634 -1.0252 0.0701
23 1 -0.3634 0.5733 0.8529
24 1 0.3971 2.1638 -1.1410
25 1 1.8972 3.1218 -1.1527
26 1 2.8963 1.4288 -2.5217
27 1 0.2053 2.0947 -3.5236
28 1 1.6166 3.1745 -3.6273
29 1 0.1813 3.2579 -7.0177
30 1 3.9692 2.1803 -0.2839
31 1 3.8265 0.4993 -0.8572
32 1 4.1290 -0.3964 1.2860
33 1 5.0395 1.1285 1.5065
34 1 0.6386 1.8549 1.6117
35 1 1.8699 3.1044 1.2388
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000720907865.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:16:26
Heat of formation + Delta-G solvation = -109.367754 kcal
Electronic energy + Delta-G solvation = -18728.291569 eV
Core-core repulsion = 15661.079161 eV
Total energy + Delta-G solvation = -3067.212408 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.44141 -37.08200 -36.09203 -35.19199 -34.20428 -32.35775 -30.15129 -27.72008
-26.86623 -24.93222 -23.61997 -21.59439 -20.09346 -18.92742 -17.46144 -16.95981
-16.22437 -16.09846 -15.39063 -15.24084 -15.04229 -14.75388 -14.28206 -14.05037
-13.69049 -13.02025 -12.80828 -12.60782 -12.28568 -12.20886 -12.10322 -12.00397
-11.64062 -11.44644 -11.38378 -11.08161 -10.84907 -10.74157 -10.51667 -10.35888
-10.06383 -9.52730 -9.19693 -8.55651 -7.43820 -6.11012 -4.13288 -0.04096
2.40843 3.27771 3.33903 3.37134 3.44585 3.61671 3.94708 4.17630
4.35955 4.42025 4.50256 4.67557 5.05616 5.08793 5.23830 5.25449
5.37217 5.43126 5.55697 5.68226 5.70812 5.80489 5.87964 6.00593
6.12472 7.06930 7.19279 7.29010 7.68243 8.01587 8.23560 8.47260
8.95663 9.52248 11.00056
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.042425 B = 0.004411 C = 0.004347
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 659.831334 B = 6346.746756 C = 6439.610108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.354 6.354
3 C 0.124 3.876
4 C 0.045 3.955
5 N -0.680 5.680
6 C 0.194 3.806
7 C -0.515 4.515
8 H 0.063 0.937
9 C 0.056 3.944
10 N -0.898 5.898
11 Si 0.900 3.100
12 H -0.280 1.280
13 H -0.287 1.287
14 H -0.273 1.273
15 C -0.101 4.101
16 C -0.583 4.583
17 S 2.390 3.610
18 O -0.932 6.932
19 O -0.948 6.948
20 C -0.623 4.623
21 H 0.060 0.940
22 H 0.088 0.912
23 H 0.036 0.964
24 H 0.077 0.923
25 H 0.034 0.966
26 H 0.330 0.670
27 H 0.027 0.973
28 H -0.013 1.013
29 H 0.262 0.738
30 H 0.097 0.903
31 H 0.112 0.888
32 H 0.141 0.859
33 H 0.136 0.864
34 H 0.142 0.858
35 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.030 -1.834 14.602 15.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.273 6.273
3 C 0.082 3.918
4 C -0.087 4.087
5 N -0.311 5.311
6 C 0.068 3.932
7 C -0.553 4.553
8 H 0.081 0.919
9 C -0.145 4.145
10 N -0.538 5.538
11 Si 0.728 3.272
12 H -0.206 1.206
13 H -0.213 1.213
14 H -0.198 1.198
15 C -0.139 4.139
16 C -0.713 4.713
17 S 2.574 3.426
18 O -0.929 6.929
19 O -0.945 6.945
20 C -0.753 4.753
21 H 0.078 0.922
22 H 0.106 0.894
23 H 0.055 0.945
24 H 0.096 0.904
25 H 0.052 0.948
26 H 0.148 0.852
27 H 0.045 0.955
28 H 0.004 0.996
29 H 0.071 0.929
30 H 0.115 0.885
31 H 0.130 0.870
32 H 0.159 0.841
33 H 0.154 0.846
34 H 0.160 0.840
35 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 3.514 -2.459 15.509 16.091
hybrid contribution 0.415 0.815 -1.815 2.032
sum 3.928 -1.645 13.694 14.341
Atomic orbital electron populations
1.22858 0.80687 1.02925 1.00547 1.87975 1.20364 1.24463 1.94466
1.22025 0.93387 0.84639 0.91783 1.22330 1.01288 0.94573 0.90489
1.60600 1.14018 1.55494 1.00995 1.19572 0.95298 0.91846 0.86486
1.21153 1.29591 1.14361 0.90242 0.91858 1.24987 0.95131 0.95061
0.99342 1.69956 1.33898 1.24556 1.25341 0.86467 0.79103 0.79181
0.82453 1.20580 1.21306 1.19815 1.21918 0.91360 1.04249 0.96396
1.30408 1.15615 1.12607 1.12652 1.08970 0.79154 0.76437 0.78009
1.93607 1.74788 1.50006 1.74547 1.93595 1.76894 1.59513 1.64459
1.31235 1.17047 1.12664 1.14336 0.92164 0.89356 0.94518 0.90446
0.94825 0.85234 0.95467 0.99561 0.92853 0.88475 0.86959 0.84110
0.84560 0.84006 0.83509
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.34 10.22 101.05 1.03 1.37 16
2 O -0.35 -5.08 10.14 -35.23 -0.36 -5.44 16
3 C 0.12 1.55 0.51 -89.24 -0.05 1.50 16
4 C 0.04 0.68 4.28 -3.82 -0.02 0.67 16
5 N -0.68 -13.16 6.33 -115.05 -0.73 -13.89 16
6 C 0.19 4.79 5.43 -4.98 -0.03 4.77 16
7 C -0.51 -14.01 9.32 -34.44 -0.32 -14.33 16
8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16
9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16
10 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16
11 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16
12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16
13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
15 C -0.10 -1.05 4.68 -25.66 -0.12 -1.17 16
16 C -0.58 -5.14 7.19 37.77 0.27 -4.87 16
17 S 2.39 25.85 6.01 -107.50 -0.65 25.20 16
18 O -0.93 -13.30 18.15 -57.73 -1.05 -14.35 16
19 O -0.95 -12.76 18.15 -57.73 -1.05 -13.81 16
20 C -0.62 -6.20 6.16 38.08 0.23 -5.97 16
21 H 0.06 0.87 6.57 -51.93 -0.34 0.53 16
22 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
23 H 0.04 0.40 6.20 -51.93 -0.32 0.07 16
24 H 0.08 1.22 6.47 -51.93 -0.34 0.88 16
25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
26 H 0.33 5.97 7.39 -39.29 -0.29 5.68 16
27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
28 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16
29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
30 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16
31 H 0.11 1.26 7.52 -51.93 -0.39 0.87 16
32 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16
33 H 0.14 0.90 8.14 -51.93 -0.42 0.47 16
34 H 0.14 1.28 6.17 -51.93 -0.32 0.96 16
35 H 0.15 1.16 8.10 -51.93 -0.42 0.74 16
LS Contribution 297.65 15.07 4.49 4.49
Total: -1.00 -34.54 297.65 -7.64 -42.17
By element:
Atomic # 1 Polarization: 6.35 SS G_CDS: -4.92 Total: 1.43 kcal
Atomic # 6 Polarization: -17.49 SS G_CDS: 0.91 Total: -16.58 kcal
Atomic # 7 Polarization: -39.26 SS G_CDS: 0.01 Total: -39.25 kcal
Atomic # 8 Polarization: -31.14 SS G_CDS: -2.45 Total: -33.59 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal
Atomic # 16 Polarization: 25.85 SS G_CDS: -0.65 Total: 25.20 kcal
Total LS contribution 4.49 Total: 4.49 kcal
Total: -34.54 -7.64 -42.17 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000720907865.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.196 kcal
(2) G-P(sol) polarization free energy of solvation -34.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.731 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.368 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds